Wall clock time and date at job start Tue Mar 31 2020 17:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48498 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47122 * 299.99231 * 3 2 1 6 6 H 1.48501 * 109.47409 * 59.99481 * 3 2 1 7 7 C 1.38752 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00336 * 180.02562 * 7 2 1 9 9 O 1.34926 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.34313 * 116.99672 * 179.97438 * 9 7 2 11 11 O 1.21215 * 120.00459 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99762 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47277 * 180.02562 * 12 10 9 14 14 C 1.39667 * 120.00169 * 179.97438 * 13 12 10 15 15 C 1.38931 * 120.07695 * 354.22807 * 14 13 12 16 16 C 1.38074 * 119.92923 * 180.30020 * 15 14 13 17 17 C 1.38310 * 120.07386 * 359.44141 * 16 15 14 18 18 C 1.50701 * 119.93046 * 180.28214 * 17 16 15 19 19 F 1.39903 * 109.46933 * 270.27919 * 18 17 16 20 20 F 1.39904 * 109.46766 * 30.27263 * 18 17 16 21 21 F 1.39897 * 109.47594 * 150.27381 * 18 17 16 22 22 C 1.38264 * 120.14748 * 0.55638 * 17 16 15 23 23 C 1.38130 * 120.07556 * 359.72297 * 22 17 16 24 24 N 1.47998 * 120.03777 * 180.02562 * 23 22 17 25 25 O 1.21806 * 119.99993 * 6.10774 * 24 23 22 26 26 O 1.21800 * 120.00251 * 186.09955 * 24 23 22 27 27 H 0.96997 * 120.00359 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46916 * 60.00114 * 12 10 9 29 29 H 1.08998 * 109.46677 * 300.00060 * 12 10 9 30 30 H 0.97002 * 120.00098 * 359.97438 * 13 12 10 31 31 H 1.08007 * 120.03724 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.96914 * 179.71670 * 16 15 14 33 33 H 1.08005 * 119.96122 * 179.74393 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7083 1.3463 0.0006 5 1 1.8897 2.3963 -1.2126 6 1 1.8896 2.3965 1.2124 7 6 2.0081 -1.2016 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2756 -3.4331 0.0010 12 6 1.3809 -4.8393 0.0000 13 7 2.3898 -5.9015 0.0007 14 6 1.9938 -7.2408 0.0009 15 6 0.6493 -7.5694 0.1213 16 6 0.2618 -8.8946 0.1273 17 6 1.2094 -9.8943 0.0021 18 6 0.7822 -11.3395 0.0027 19 9 0.7765 -11.8235 1.3154 20 9 -0.5033 -11.4460 -0.5391 21 9 1.6766 -12.0906 -0.7674 22 6 2.5483 -9.5710 -0.1180 23 6 2.9434 -8.2474 -0.1190 24 7 4.3767 -7.9022 -0.2481 25 8 5.1966 -8.7765 -0.4650 26 8 4.7365 -6.7438 -0.1377 27 1 -0.4850 0.8400 -0.0004 28 1 0.7585 -4.9295 -0.8903 29 1 0.7578 -4.9299 0.8897 30 1 3.3329 -5.6746 0.0011 31 1 -0.0916 -6.7891 0.2145 32 1 -0.7828 -9.1508 0.2255 33 1 3.2861 -10.3542 -0.2114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004245781.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:05 Heat of formation + Delta-G solvation = -211.973570 kcal Electronic energy + Delta-G solvation = -27937.111529 eV Core-core repulsion = 22937.535819 eV Total energy + Delta-G solvation = -4999.575711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.17114 -48.68784 -48.62645 -43.44840 -41.37331 -40.75880 -38.25270 -37.61509 -36.60218 -34.37598 -33.39466 -32.28440 -29.51105 -27.81314 -27.33306 -26.05201 -24.18514 -23.16972 -21.99072 -20.74823 -20.04276 -19.96084 -19.51831 -19.46110 -19.12212 -18.72483 -18.36208 -17.90170 -17.54622 -17.20846 -16.42157 -16.20262 -15.74508 -15.57063 -15.42669 -15.30475 -15.18295 -15.05903 -14.81659 -14.77709 -14.64361 -14.20432 -14.13560 -13.63612 -13.51391 -13.15688 -12.79028 -12.76920 -12.47716 -12.45720 -12.25164 -12.18799 -12.04759 -11.85559 -11.27063 -10.85204 -10.74580 -9.27435 -8.60172 -6.39700 -1.29478 -0.31972 0.13583 0.25739 1.20254 1.31546 1.46267 1.53559 1.55145 1.65189 1.97548 2.14120 2.60291 2.65634 2.91936 2.92148 3.09350 3.37973 3.51379 3.62032 3.73441 4.06713 4.16007 4.17630 4.37045 4.47368 4.63552 4.75147 4.98651 5.09594 5.16674 5.56116 5.75855 6.09342 6.40190 6.53618 6.85573 7.60264 8.59553 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002564 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.645480 B =10918.462770 C =12052.233035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.003 3.997 3 Si 1.013 2.987 4 H -0.268 1.268 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.422 4.422 8 H 0.081 0.919 9 O -0.230 6.230 10 C 0.384 3.616 11 O -0.576 6.576 12 C 0.135 3.865 13 N -0.706 5.706 14 C 0.303 3.697 15 C -0.192 4.192 16 C 0.045 3.955 17 C -0.246 4.246 18 C 0.527 3.473 19 F -0.177 7.177 20 F -0.170 7.170 21 F -0.180 7.180 22 C 0.046 3.954 23 C -0.147 4.147 24 N 0.050 4.950 25 O -0.147 6.147 26 O -0.245 6.245 27 H 0.281 0.719 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.421 0.579 31 H 0.188 0.812 32 H 0.192 0.808 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 -21.686 0.450 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.198 4.198 3 Si 0.833 3.167 4 H -0.193 1.193 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.099 0.901 9 O -0.137 6.137 10 C 0.231 3.769 11 O -0.474 6.474 12 C 0.011 3.989 13 N -0.343 5.343 14 C 0.186 3.814 15 C -0.214 4.214 16 C 0.025 3.975 17 C -0.251 4.251 18 C 0.473 3.527 19 F -0.159 7.159 20 F -0.151 7.151 21 F -0.161 7.161 22 C 0.026 3.974 23 C -0.239 4.239 24 N 0.555 4.445 25 O -0.370 6.370 26 O -0.432 6.432 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.272 0.728 31 H 0.205 0.795 32 H 0.209 0.791 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.040 -21.268 0.528 22.115 hybrid contribution 1.577 0.789 -0.073 1.765 sum -4.463 -20.479 0.456 20.965 Atomic orbital electron populations 1.70034 1.07368 1.29541 1.46110 1.26428 0.96886 1.02025 0.94499 0.84618 0.77735 0.75025 0.79348 1.19258 1.18373 1.18334 1.21424 0.92165 0.80862 1.55287 0.90148 1.83841 1.39766 1.13828 1.76250 1.24038 0.86770 0.88583 0.77489 1.90613 1.17195 1.88093 1.51510 1.20896 0.90067 0.79882 1.08021 1.46227 1.12945 1.01978 1.73199 1.18065 0.93800 0.82507 0.87041 1.21183 0.91652 0.98949 1.09633 1.21465 1.01478 0.89924 0.84632 1.19617 0.93901 0.92933 1.18619 1.17790 0.74913 0.86260 0.73736 1.93251 1.96219 1.89670 1.36735 1.93218 1.39315 1.96638 1.85938 1.93211 1.68256 1.78880 1.75745 1.20534 0.96829 0.93276 0.86747 1.20450 0.78352 0.95831 1.29243 1.43728 1.03965 1.00036 0.96784 1.94465 1.49472 1.42675 1.50398 1.94340 1.84391 1.04971 1.59469 0.90957 0.84496 0.84175 0.72832 0.79476 0.79125 0.81146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.58 13.67 21.62 0.30 -49.28 16 2 C 0.00 0.17 5.49 84.87 0.47 0.64 16 3 Si 1.01 41.75 29.55 68.60 2.03 43.77 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.42 -24.35 9.65 67.94 0.66 -23.69 16 8 H 0.08 4.81 6.86 -2.91 -0.02 4.79 16 9 O -0.23 -12.35 9.75 14.79 0.14 -12.21 16 10 C 0.38 17.43 7.97 71.24 0.57 18.00 16 11 O -0.58 -30.28 14.90 20.76 0.31 -29.97 16 12 C 0.14 3.89 5.55 85.63 0.48 4.36 16 13 N -0.71 -20.97 5.58 -343.14 -1.92 -22.89 16 14 C 0.30 6.85 6.63 38.22 0.25 7.11 16 15 C -0.19 -2.59 9.32 22.40 0.21 -2.38 16 16 C 0.04 0.45 9.39 22.25 0.21 0.65 16 17 C -0.25 -3.36 5.45 -19.84 -0.11 -3.47 16 18 C 0.53 7.07 3.36 71.24 0.24 7.31 16 19 F -0.18 -2.63 17.30 44.97 0.78 -1.86 16 20 F -0.17 -2.12 16.46 44.97 0.74 -1.38 16 21 F -0.18 -2.76 16.46 44.97 0.74 -2.02 16 22 C 0.05 0.82 8.90 22.25 0.20 1.01 16 23 C -0.15 -3.58 6.86 36.51 0.25 -3.33 16 24 N 0.05 1.59 4.45 -46.16 -0.21 1.39 16 25 O -0.15 -4.51 18.46 18.88 0.35 -4.16 16 26 O -0.24 -9.24 15.71 18.89 0.30 -8.94 16 27 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.14 3.07 8.13 -2.39 -0.02 3.05 16 29 H 0.14 3.04 7.73 -2.39 -0.02 3.02 16 30 H 0.42 15.55 3.88 -98.47 -0.38 15.16 16 31 H 0.19 1.54 6.74 -2.91 -0.02 1.52 16 32 H 0.19 0.57 7.61 -2.91 -0.02 0.55 16 33 H 0.17 2.70 7.16 -2.91 -0.02 2.67 16 Total: -1.00 -74.01 318.61 7.82 -66.19 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.85 Total: 15.16 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 3.42 Total: 6.21 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -1.83 Total: -70.78 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: 1.10 Total: -55.28 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 2.26 Total: -5.26 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -74.01 7.82 -66.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004245781.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.785 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds