Wall clock time and date at job start Tue Mar 31 2020 18:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86792 * 120.00276 * 2 1 4 4 H 1.48501 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47148 * 300.00199 * 3 2 1 6 6 H 1.48501 * 109.47155 * 59.99838 * 3 2 1 7 7 C 1.38806 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99635 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99923 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47097 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99819 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00328 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00361 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47100 * 179.97438 * 14 13 11 16 16 N 1.46497 * 109.47100 * 180.02562 * 15 14 13 17 17 C 1.34527 * 124.46173 * 269.97804 * 16 15 14 18 18 O 1.21445 * 125.70798 * 0.03494 * 17 16 15 19 19 C 1.47815 * 108.57968 * 180.02562 * 17 16 15 20 20 C 1.38565 * 134.29113 * 180.02562 * 19 17 16 21 21 C 1.38612 * 119.71975 * 179.97438 * 20 19 17 22 22 C 1.38234 * 120.45518 * 0.02900 * 21 20 19 23 23 C 1.38604 * 120.46148 * 359.95875 * 22 21 20 24 24 C 1.38570 * 119.72412 * 0.02562 * 23 22 21 25 25 C 1.34527 * 124.46351 * 89.99811 * 16 15 14 26 26 O 1.21449 * 125.70270 * 0.02562 * 25 16 15 27 27 H 0.97003 * 119.99890 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47053 * 59.99787 * 10 9 7 29 29 H 1.09001 * 109.46604 * 300.00219 * 10 9 7 30 30 H 0.97002 * 119.99542 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46932 * 59.99983 * 14 13 11 32 32 H 1.08999 * 109.46994 * 300.00150 * 14 13 11 33 33 H 1.09004 * 109.47148 * 60.00231 * 15 14 13 34 34 H 1.08999 * 109.47414 * 300.00008 * 15 14 13 35 35 H 1.08008 * 120.14186 * 359.68328 * 20 19 17 36 36 H 1.08000 * 119.77048 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.76600 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.14014 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1291 -2.7281 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0011 13 7 2.8438 -6.3433 -0.0008 14 6 2.3300 -7.7152 -0.0008 15 6 3.5020 -8.6987 -0.0009 16 7 2.9882 -10.0706 -0.0016 17 6 2.7214 -10.7841 1.1072 18 8 2.8655 -10.3986 2.2498 19 6 2.2233 -12.1155 0.7021 20 6 1.8017 -13.2415 1.3907 21 6 1.3827 -14.3602 0.6876 22 6 1.3835 -14.3599 -0.6947 23 6 1.8023 -13.2407 -1.3969 24 6 2.2236 -12.1149 -0.7074 25 6 2.7215 -10.7830 -1.1111 26 8 2.8666 -10.3968 -2.2534 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7315 0.8895 29 1 3.1242 -3.7314 -0.8905 30 1 3.8006 -6.1837 -0.0004 31 1 1.7217 -7.8753 -0.8910 32 1 1.7210 -7.8751 0.8890 33 1 4.1107 -8.5387 0.8891 34 1 4.1106 -8.5386 -0.8909 35 1 1.8039 -13.2492 2.4708 36 1 1.0543 -15.2385 1.2236 37 1 1.0552 -15.2378 -1.2313 38 1 1.8004 -13.2459 -2.4768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056170125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:41 Heat of formation + Delta-G solvation = -49.504507 kcal Electronic energy + Delta-G solvation = -24268.411165 eV Core-core repulsion = 20396.323347 eV Total energy + Delta-G solvation = -3872.087818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.77920 -39.32375 -39.03720 -38.90847 -36.44251 -35.02556 -32.65700 -32.42206 -31.71819 -30.20884 -28.30275 -25.59184 -25.51734 -24.70067 -22.70381 -22.65308 -20.67014 -20.17126 -18.29608 -17.96048 -17.67817 -17.20165 -16.74921 -16.08035 -15.84898 -15.75897 -15.47981 -15.10713 -14.88078 -14.79787 -14.58886 -14.39465 -14.16632 -13.90276 -13.46613 -13.17790 -12.91070 -12.64288 -12.55388 -12.29693 -12.26745 -11.59818 -11.06363 -11.02316 -11.01495 -10.75883 -10.75302 -10.33029 -9.81736 -9.80763 -9.78442 -9.46636 -9.07982 -8.99104 -8.23037 -6.49731 -6.21239 -3.91835 -0.46314 0.38907 1.51425 1.75550 2.47298 3.03296 3.04214 3.05975 3.10905 3.22335 3.28973 3.33709 3.69539 3.82260 4.02803 4.20656 4.29253 4.44286 4.44476 4.50200 4.62587 4.82692 4.91987 4.96632 5.13810 5.14045 5.18830 5.32860 5.47239 5.51394 5.58017 5.60618 5.79312 5.88478 5.99045 6.13184 6.20122 6.47430 6.75041 7.19906 7.59969 7.61895 8.36037 8.55609 9.24173 10.86282 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.033364 B = 0.001851 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.037019 B =15123.861436 C =15230.944496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.736 5.736 14 C 0.107 3.893 15 C 0.102 3.898 16 N -0.573 5.573 17 C 0.574 3.426 18 O -0.455 6.455 19 C -0.138 4.138 20 C -0.044 4.044 21 C -0.096 4.096 22 C -0.096 4.096 23 C -0.044 4.044 24 C -0.138 4.138 25 C 0.574 3.426 26 O -0.455 6.455 27 H 0.268 0.732 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.400 0.600 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.019 -32.677 -0.004 33.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.392 5.392 14 C -0.019 4.019 15 C -0.019 4.019 16 N -0.316 5.316 17 C 0.363 3.637 18 O -0.325 6.325 19 C -0.142 4.142 20 C -0.063 4.063 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.063 4.063 24 C -0.142 4.142 25 C 0.363 3.637 26 O -0.325 6.325 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.234 0.766 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.037 -32.386 -0.004 32.944 hybrid contribution 2.409 1.407 0.000 2.790 sum 8.445 -30.980 -0.004 32.110 Atomic orbital electron populations 1.70030 1.05962 1.27356 1.46923 1.25005 0.95041 0.99071 0.94544 0.86100 0.79570 0.81832 0.77890 1.19610 1.20571 1.20567 1.22910 0.94961 0.91588 1.58856 0.90817 1.85429 1.04866 0.96364 1.96721 1.23524 1.06669 0.94991 1.05108 1.20340 0.86451 0.86189 0.74995 1.90716 1.15366 1.85509 1.47170 1.45775 1.10161 1.04749 1.78500 1.21488 0.95680 0.81238 1.03455 1.21892 0.96838 0.77301 1.05886 1.46389 1.61053 1.15618 1.08514 1.18394 0.76191 0.85006 0.84139 1.90847 1.47541 1.74941 1.19175 1.20547 1.03873 0.95289 0.94475 1.20840 0.94135 0.90273 1.01064 1.21500 0.97391 0.98083 0.94429 1.21498 0.97383 0.98088 0.94437 1.20836 0.94137 0.90270 1.01062 1.20545 1.03889 0.95272 0.94475 1.18393 0.76196 0.85008 0.84131 1.90848 1.47536 1.74906 1.19217 0.92229 0.89018 0.89026 0.76576 0.90890 0.90880 0.87645 0.87651 0.83887 0.83951 0.83951 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 11 C 0.53 10.20 7.85 -10.99 -0.09 10.11 16 12 O -0.51 -12.05 15.86 5.55 0.09 -11.96 16 13 N -0.74 -9.99 5.56 -60.30 -0.33 -10.32 16 14 C 0.11 1.35 6.00 -4.04 -0.02 1.33 16 15 C 0.10 0.95 5.86 -4.04 -0.02 0.92 16 16 N -0.57 -5.77 2.62 -117.62 -0.31 -6.07 16 17 C 0.57 5.94 8.02 -12.46 -0.10 5.84 16 18 O -0.45 -5.80 17.68 5.41 0.10 -5.70 16 19 C -0.14 -1.11 6.40 -104.83 -0.67 -1.78 16 20 C -0.04 -0.24 10.09 -39.32 -0.40 -0.64 16 21 C -0.10 -0.31 10.04 -39.45 -0.40 -0.71 16 22 C -0.10 -0.31 10.04 -39.45 -0.40 -0.71 16 23 C -0.04 -0.24 10.09 -39.32 -0.40 -0.64 16 24 C -0.14 -1.11 6.41 -104.84 -0.67 -1.78 16 25 C 0.57 5.94 8.02 -12.46 -0.10 5.84 16 26 O -0.45 -5.80 17.68 5.41 0.10 -5.70 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.40 3.96 8.47 -40.82 -0.35 3.61 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.11 0.84 7.97 -51.93 -0.41 0.43 16 34 H 0.11 0.84 7.96 -51.93 -0.41 0.43 16 35 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 36 H 0.14 0.07 8.06 -52.49 -0.42 -0.35 16 37 H 0.14 0.07 8.06 -52.49 -0.42 -0.35 16 38 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -38.31 359.34 -8.39 -46.70 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.10 Total: -1.22 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.84 Total: 1.84 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.09 Total: -42.05 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.28 Total: -23.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.31 -8.39 -46.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056170125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.803 kcal (2) G-P(sol) polarization free energy of solvation -38.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds