Wall clock time and date at job start Tue Mar 31 2020 18:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86792 * 120.00276 * 2 1 4 4 H 1.48501 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47148 * 300.00199 * 3 2 1 6 6 H 1.48501 * 109.47155 * 59.99838 * 3 2 1 7 7 C 1.38806 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99635 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99923 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47097 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99819 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00328 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00361 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47100 * 179.97438 * 14 13 11 16 16 N 1.46497 * 109.47100 * 180.02562 * 15 14 13 17 17 C 1.34527 * 124.46173 * 269.97804 * 16 15 14 18 18 O 1.21445 * 125.70798 * 0.03494 * 17 16 15 19 19 C 1.47815 * 108.57968 * 180.02562 * 17 16 15 20 20 C 1.38565 * 134.29113 * 180.02562 * 19 17 16 21 21 C 1.38612 * 119.71975 * 179.97438 * 20 19 17 22 22 C 1.38234 * 120.45518 * 0.02900 * 21 20 19 23 23 C 1.38604 * 120.46148 * 359.95875 * 22 21 20 24 24 C 1.38570 * 119.72412 * 0.02562 * 23 22 21 25 25 C 1.34527 * 124.46351 * 89.99811 * 16 15 14 26 26 O 1.21449 * 125.70270 * 0.02562 * 25 16 15 27 27 H 0.97003 * 119.99890 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47053 * 59.99787 * 10 9 7 29 29 H 1.09001 * 109.46604 * 300.00219 * 10 9 7 30 30 H 0.97002 * 119.99542 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46932 * 59.99983 * 14 13 11 32 32 H 1.08999 * 109.46994 * 300.00150 * 14 13 11 33 33 H 1.09004 * 109.47148 * 60.00231 * 15 14 13 34 34 H 1.08999 * 109.47414 * 300.00008 * 15 14 13 35 35 H 1.08008 * 120.14186 * 359.68328 * 20 19 17 36 36 H 1.08000 * 119.77048 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.76600 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.14014 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1291 -2.7281 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0011 13 7 2.8438 -6.3433 -0.0008 14 6 2.3300 -7.7152 -0.0008 15 6 3.5020 -8.6987 -0.0009 16 7 2.9882 -10.0706 -0.0016 17 6 2.7214 -10.7841 1.1072 18 8 2.8655 -10.3986 2.2498 19 6 2.2233 -12.1155 0.7021 20 6 1.8017 -13.2415 1.3907 21 6 1.3827 -14.3602 0.6876 22 6 1.3835 -14.3599 -0.6947 23 6 1.8023 -13.2407 -1.3969 24 6 2.2236 -12.1149 -0.7074 25 6 2.7215 -10.7830 -1.1111 26 8 2.8666 -10.3968 -2.2534 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7315 0.8895 29 1 3.1242 -3.7314 -0.8905 30 1 3.8006 -6.1837 -0.0004 31 1 1.7217 -7.8753 -0.8910 32 1 1.7210 -7.8751 0.8890 33 1 4.1107 -8.5387 0.8891 34 1 4.1106 -8.5386 -0.8909 35 1 1.8039 -13.2492 2.4708 36 1 1.0543 -15.2385 1.2236 37 1 1.0552 -15.2378 -1.2313 38 1 1.8004 -13.2459 -2.4768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056170125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:41 Heat of formation + Delta-G solvation = -77.417938 kcal Electronic energy + Delta-G solvation = -24269.621582 eV Core-core repulsion = 20396.323347 eV Total energy + Delta-G solvation = -3873.298235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.48552 -40.72993 -39.88195 -39.50296 -37.36390 -36.19028 -34.59818 -33.49063 -32.12272 -31.47155 -29.43217 -27.68212 -26.26637 -25.54341 -23.37306 -23.27277 -22.01962 -20.96793 -19.89592 -18.88090 -18.54227 -18.14686 -17.85695 -17.06327 -17.00438 -16.89730 -16.88857 -16.47763 -15.87124 -15.54912 -15.44351 -15.43139 -15.25913 -15.03490 -14.85601 -14.45854 -13.93467 -13.69339 -13.51964 -13.24760 -13.17615 -12.93117 -12.79018 -12.73617 -12.60767 -11.74970 -11.68662 -11.52588 -11.25734 -11.17041 -11.04583 -10.33338 -10.29618 -10.22110 -10.21238 -8.69225 -8.36048 -6.14637 -1.05610 -0.01824 0.94460 0.95083 1.28133 1.41105 1.46917 1.50669 1.57871 1.71641 2.23324 2.26461 2.53577 2.61747 2.98325 3.15070 3.29267 3.50869 3.58417 3.65844 3.90704 4.05554 4.09420 4.15874 4.18423 4.26337 4.27455 4.39281 4.48153 4.50510 4.66594 4.84328 4.93104 5.19310 5.22273 5.27874 5.41337 5.43916 5.69812 5.99377 6.19091 6.35843 6.42924 7.05275 7.12156 8.73579 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.033364 B = 0.001851 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.037019 B =15123.861436 C =15230.944496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.155 6.155 10 C -0.127 4.127 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.707 5.707 14 C 0.113 3.887 15 C 0.107 3.893 16 N -0.577 5.577 17 C 0.572 3.428 18 O -0.488 6.488 19 C -0.160 4.160 20 C -0.045 4.045 21 C -0.083 4.083 22 C -0.083 4.083 23 C -0.045 4.045 24 C -0.160 4.160 25 C 0.572 3.428 26 O -0.489 6.489 27 H 0.271 0.729 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.422 0.578 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.858 -34.917 -0.004 36.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.072 5.928 10 C -0.278 4.278 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.363 5.363 14 C -0.013 4.013 15 C -0.014 4.014 16 N -0.319 5.319 17 C 0.364 3.636 18 O -0.361 6.361 19 C -0.164 4.164 20 C -0.064 4.064 21 C -0.100 4.100 22 C -0.100 4.100 23 C -0.064 4.064 24 C -0.164 4.164 25 C 0.364 3.636 26 O -0.361 6.361 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.261 0.739 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.172 0.828 36 H 0.197 0.803 37 H 0.197 0.803 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.937 -34.672 -0.003 35.569 hybrid contribution 1.827 1.859 0.000 2.606 sum 9.764 -32.813 -0.004 34.235 Atomic orbital electron populations 1.70196 1.08028 1.28574 1.48061 1.26168 0.95998 1.03435 0.93733 0.84868 0.78618 0.76169 0.78052 1.17917 1.19949 1.19938 1.23243 0.95419 0.91800 1.58786 0.89682 1.85638 1.10627 0.99433 1.97078 1.23354 1.03638 0.93554 1.07294 1.20171 0.86117 0.86771 0.74809 1.90704 1.17590 1.86101 1.49919 1.45421 1.10765 1.04068 1.76066 1.21453 0.96895 0.81158 1.01785 1.21879 0.95416 0.76511 1.07593 1.46474 1.60987 1.15671 1.08761 1.18831 0.75284 0.85950 0.83585 1.90816 1.49282 1.75856 1.20180 1.20496 1.06171 0.95087 0.94651 1.21184 0.93297 0.90003 1.01905 1.21972 0.95274 0.98151 0.94633 1.21970 0.95267 0.98154 0.94643 1.21180 0.93300 0.90002 1.01900 1.20495 1.06189 0.95067 0.94653 1.18830 0.75289 0.85951 0.83577 1.90817 1.49278 1.75822 1.20223 0.91988 0.86676 0.86685 0.73944 0.92605 0.92595 0.85924 0.85935 0.82782 0.80263 0.80263 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.74 13.22 21.65 0.29 -56.45 16 2 C 0.01 0.65 5.49 84.86 0.47 1.11 16 3 Si 1.00 44.05 29.55 68.60 2.03 46.07 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -31.40 9.50 67.96 0.65 -30.75 16 8 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 9 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 10 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 11 C 0.54 20.54 7.85 87.66 0.69 21.23 16 12 O -0.57 -27.54 15.86 -3.05 -0.05 -27.59 16 13 N -0.71 -18.69 5.56 -463.07 -2.57 -21.27 16 14 C 0.11 2.91 6.00 86.38 0.52 3.43 16 15 C 0.11 1.96 5.86 86.38 0.51 2.47 16 16 N -0.58 -11.92 2.62 -762.96 -2.00 -13.93 16 17 C 0.57 12.19 8.02 86.82 0.70 12.89 16 18 O -0.49 -12.85 17.68 -3.54 -0.06 -12.91 16 19 C -0.16 -2.52 6.40 -20.00 -0.13 -2.65 16 20 C -0.05 -0.40 10.09 22.44 0.23 -0.17 16 21 C -0.08 -0.22 10.04 22.36 0.22 0.01 16 22 C -0.08 -0.22 10.04 22.36 0.22 0.01 16 23 C -0.05 -0.40 10.09 22.44 0.23 -0.17 16 24 C -0.16 -2.52 6.41 -20.00 -0.13 -2.65 16 25 C 0.57 12.19 8.02 86.81 0.70 12.89 16 26 O -0.49 -12.85 17.68 -3.55 -0.06 -12.92 16 27 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 29 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 30 H 0.42 7.46 8.47 -92.71 -0.79 6.67 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.12 1.85 7.97 -2.38 -0.02 1.83 16 34 H 0.12 1.85 7.96 -2.39 -0.02 1.83 16 35 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 36 H 0.18 -0.80 8.06 -2.91 -0.02 -0.83 16 37 H 0.18 -0.80 8.06 -2.91 -0.02 -0.83 16 38 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -88.42 359.34 2.04 -86.39 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.33 Total: 9.54 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 5.30 Total: 12.98 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -4.29 Total: -91.65 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.17 Total: -53.42 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -88.42 2.04 -86.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056170125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.971 kcal (2) G-P(sol) polarization free energy of solvation -88.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds