Wall clock time and date at job start Tue Mar 31 2020 19:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 S 1.81399 * 109.47414 * 4.76950 * 3 2 1 5 5 C 1.81398 * 103.00504 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47791 * 179.97438 * 5 4 3 7 7 O 1.20829 * 119.99507 * 0.02562 * 6 5 4 8 8 O 1.34221 * 120.00534 * 179.97438 * 6 5 4 9 9 C 1.45200 * 117.00344 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47426 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99951 * 354.93908 * 10 9 8 12 12 N 1.34770 * 120.00462 * 174.94275 * 10 9 8 13 13 C 1.37148 * 119.99684 * 5.67552 * 12 10 9 14 14 H 1.07991 * 119.99849 * 55.67002 * 13 12 10 15 15 C 1.38895 * 119.99574 * 235.66975 * 13 12 10 16 16 N 1.31415 * 120.00325 * 9.24657 * 15 13 12 17 17 Si 1.86803 * 119.99354 * 189.24263 * 15 13 12 18 18 H 1.48504 * 109.46985 * 60.00699 * 17 15 13 19 19 H 1.48500 * 109.46757 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47564 * 300.00388 * 17 15 13 21 21 C 1.39787 * 120.00306 * 185.67775 * 12 10 9 22 22 C 1.38961 * 120.07792 * 175.18913 * 21 12 10 23 23 C 1.38082 * 119.92435 * 179.97438 * 22 21 12 24 24 C 1.38311 * 120.07409 * 359.97438 * 23 22 21 25 25 C 1.38302 * 120.15721 * 0.02562 * 24 23 22 26 26 C 1.38085 * 120.08210 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47383 * 244.77161 * 3 2 1 28 28 H 1.09006 * 109.47420 * 124.77039 * 3 2 1 29 29 H 1.09007 * 109.47024 * 59.99699 * 5 4 3 30 30 H 1.08998 * 109.47193 * 300.00258 * 5 4 3 31 31 H 1.09000 * 109.46805 * 60.00461 * 9 8 6 32 32 H 1.08994 * 109.47175 * 300.00102 * 9 8 6 33 33 H 0.96994 * 119.99788 * 184.97940 * 16 15 13 34 34 H 1.08007 * 120.03887 * 359.70095 * 22 21 12 35 35 H 1.08001 * 119.96344 * 179.97438 * 23 22 21 36 36 H 1.07996 * 119.92050 * 179.97438 * 24 23 22 37 37 H 1.08006 * 119.96364 * 180.02562 * 25 24 23 38 38 H 1.07990 * 120.04576 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 16 3.2134 -1.7034 -0.1422 5 6 5.0158 -1.4990 -0.1244 6 6 5.6757 -2.8491 -0.2364 7 8 4.9995 -3.8469 -0.3201 8 8 7.0146 -2.9432 -0.2441 9 6 7.5813 -4.2755 -0.3540 10 6 9.0854 -4.1840 -0.3459 11 8 9.6269 -3.0987 -0.3489 12 7 9.8290 -5.3079 -0.3352 13 6 9.2222 -6.5326 -0.4493 14 1 8.5808 -6.7408 -1.2928 15 6 9.4328 -7.5048 0.5200 16 7 10.0606 -7.1981 1.6329 17 14 8.8233 -9.2485 0.2414 18 1 9.4656 -9.8091 -0.9745 19 1 9.1711 -10.0879 1.4160 20 1 7.3493 -9.2349 0.0611 21 6 11.2186 -5.2256 -0.2079 22 6 11.9776 -6.3842 -0.0962 23 6 13.3501 -6.2992 0.0289 24 6 13.9696 -5.0627 0.0426 25 6 13.2173 -3.9074 -0.0683 26 6 11.8443 -3.9849 -0.1937 27 1 2.9711 0.4388 0.9296 28 1 2.9711 0.5869 -0.8442 29 1 5.3183 -1.0233 0.8086 30 1 5.3190 -0.8751 -0.9652 31 1 7.2500 -4.7355 -1.2851 32 1 7.2500 -4.8819 0.4889 33 1 10.2716 -7.8914 2.2776 34 1 11.4941 -7.3500 -0.1029 35 1 13.9406 -7.1993 0.1161 36 1 15.0432 -4.9990 0.1410 37 1 13.7043 -2.9435 -0.0576 38 1 11.2575 -3.0825 -0.2799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058681173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:27 Heat of formation + Delta-G solvation = -28.806581 kcal Electronic energy + Delta-G solvation = -24929.051735 eV Core-core repulsion = 21057.861447 eV Total energy + Delta-G solvation = -3871.190288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47814 -39.66791 -37.38650 -37.05798 -36.20501 -35.15456 -32.11284 -31.25822 -30.56730 -29.75179 -29.50057 -27.22383 -25.29586 -22.18411 -21.44557 -21.03399 -19.69576 -18.75746 -18.05585 -17.63656 -16.75714 -16.70746 -16.15214 -15.90695 -15.69681 -15.51076 -15.18814 -14.66355 -14.64799 -14.43878 -13.67736 -13.62511 -13.26734 -13.13558 -12.98667 -12.63099 -12.51195 -12.44071 -12.37801 -12.24011 -11.83540 -11.59796 -11.34765 -11.18426 -10.91203 -10.61377 -10.57595 -10.50428 -10.45923 -10.13559 -9.37035 -8.85785 -8.30281 -8.17585 -7.88187 -7.01214 -6.45123 -4.71109 0.48852 1.75818 2.14289 2.28756 2.29366 2.47869 2.53256 2.72590 3.00055 3.07931 3.08554 3.32036 3.53874 3.85838 4.20090 4.46099 4.60264 4.62171 4.66548 4.80326 4.92918 5.01853 5.45894 5.63857 5.79937 5.81926 5.95820 6.08934 6.49888 6.61052 6.64148 6.78958 7.02225 7.03911 7.12494 7.41430 7.51409 7.57076 7.64030 7.71267 7.93897 8.30374 8.69796 9.03745 9.41291 10.33998 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.002640 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.843339 B =10603.826876 C =12160.271295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.222 3.778 3 C -0.024 4.024 4 S -0.135 6.135 5 C -0.105 4.105 6 C 0.476 3.524 7 O -0.488 6.488 8 O -0.331 6.331 9 C 0.074 3.926 10 C 0.495 3.505 11 O -0.549 6.549 12 N -0.375 5.375 13 C -0.383 4.383 14 H 0.096 0.904 15 C 0.060 3.940 16 N -0.837 5.837 17 Si 0.915 3.085 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.265 1.265 21 C 0.183 3.817 22 C -0.103 4.103 23 C -0.123 4.123 24 C -0.170 4.170 25 C -0.120 4.120 26 C -0.191 4.191 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.278 0.722 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 9.402 -2.219 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.097 4.097 3 C -0.174 4.174 4 S 0.090 5.910 5 C -0.254 4.254 6 C 0.317 3.683 7 O -0.375 6.375 8 O -0.246 6.246 9 C -0.002 4.002 10 C 0.286 3.714 11 O -0.432 6.432 12 N -0.084 5.084 13 C -0.510 4.510 14 H 0.114 0.886 15 C -0.151 4.151 16 N -0.468 5.468 17 Si 0.740 3.260 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.190 1.190 21 C 0.087 3.913 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.189 4.189 25 C -0.139 4.139 26 C -0.210 4.210 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.049 8.608 -2.090 11.320 hybrid contribution 1.110 -0.200 0.250 1.155 sum -5.940 8.408 -1.840 10.457 Atomic orbital electron populations 1.81285 1.12110 1.07009 1.08048 1.27710 0.93699 0.94349 0.93904 1.20810 0.86152 1.01381 1.09052 1.88081 1.00899 1.04498 1.97569 1.23104 0.95062 0.97632 1.09563 1.22287 0.81764 0.90367 0.73924 1.90750 1.64500 1.37965 1.44296 1.86430 1.20805 1.34582 1.82768 1.22662 0.92424 0.79840 1.05288 1.20190 0.87959 0.84290 0.78975 1.90223 1.71666 1.28737 1.52554 1.40767 1.02458 1.05631 1.59570 1.19374 1.32846 0.89856 1.08907 0.88619 1.25633 0.95213 1.00890 0.93391 1.70010 1.35555 1.34659 1.06573 0.86175 0.80102 0.81256 0.78515 1.19151 1.20400 1.18958 1.18230 0.83294 0.93489 0.96330 1.21031 0.92377 0.98778 1.00136 1.20785 0.94440 0.96691 1.02325 1.20820 0.98435 0.93173 1.06500 1.20875 0.94116 0.97151 1.01753 1.22783 0.95054 0.99690 1.03467 0.85103 0.85114 0.85110 0.85121 0.88448 0.87437 0.91154 0.85006 0.87640 0.88058 0.87580 0.80834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.66 18.54 42.15 0.78 -3.88 16 2 C 0.22 1.82 15.44 -20.76 -0.32 1.50 16 3 C -0.02 -0.10 6.42 34.37 0.22 0.12 16 4 S -0.13 -1.20 20.83 -107.50 -2.24 -3.44 16 5 C -0.10 -0.85 6.53 36.00 0.24 -0.62 16 6 C 0.48 6.65 7.98 36.00 0.29 6.93 16 7 O -0.49 -8.27 15.61 -18.75 -0.29 -8.56 16 8 O -0.33 -5.51 9.76 -45.86 -0.45 -5.96 16 9 C 0.07 1.40 4.77 36.01 0.17 1.57 16 10 C 0.50 11.13 7.65 -10.99 -0.08 11.04 16 11 O -0.55 -12.89 12.90 -14.05 -0.18 -13.07 16 12 N -0.38 -8.97 2.62 -58.98 -0.15 -9.12 16 13 C -0.38 -8.93 7.61 -14.93 -0.11 -9.05 16 14 H 0.10 2.10 7.85 -52.49 -0.41 1.69 16 15 C 0.06 1.39 3.49 -17.49 -0.06 1.32 16 16 N -0.84 -20.74 11.39 55.49 0.63 -20.11 16 17 Si 0.92 17.97 29.57 -169.99 -5.03 12.95 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 C 0.18 4.40 6.05 -83.70 -0.51 3.89 16 22 C -0.10 -2.36 7.87 -39.37 -0.31 -2.67 16 23 C -0.12 -2.49 10.04 -39.61 -0.40 -2.89 16 24 C -0.17 -3.23 10.04 -39.53 -0.40 -3.62 16 25 C -0.12 -2.38 10.04 -39.61 -0.40 -2.78 16 26 C -0.19 -4.32 9.06 -39.37 -0.36 -4.68 16 27 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 29 H 0.13 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.10 1.71 8.13 -51.93 -0.42 1.29 16 32 H 0.11 2.10 8.04 -51.93 -0.42 1.68 16 33 H 0.28 6.54 8.32 -40.82 -0.34 6.20 16 34 H 0.13 3.13 5.15 -52.48 -0.27 2.86 16 35 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.18 4.07 4.50 -56.38 -0.25 3.81 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -31.28 354.27 -7.49 -38.77 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.87 Total: 7.01 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.03 Total: 0.08 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 1.26 Total: -33.12 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.92 Total: -27.59 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.24 Total: -3.44 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.28 -7.49 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.967 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds