Wall clock time and date at job start Tue Mar 31 2020 19:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 S 1.81399 * 109.47414 * 4.76950 * 3 2 1 5 5 C 1.81398 * 103.00504 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47791 * 179.97438 * 5 4 3 7 7 O 1.20829 * 119.99507 * 0.02562 * 6 5 4 8 8 O 1.34221 * 120.00534 * 179.97438 * 6 5 4 9 9 C 1.45200 * 117.00344 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47426 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99951 * 354.93908 * 10 9 8 12 12 N 1.34770 * 120.00462 * 174.94275 * 10 9 8 13 13 C 1.37148 * 119.99684 * 5.67552 * 12 10 9 14 14 H 1.07991 * 119.99849 * 55.67002 * 13 12 10 15 15 C 1.38895 * 119.99574 * 235.66975 * 13 12 10 16 16 N 1.31415 * 120.00325 * 9.24657 * 15 13 12 17 17 Si 1.86803 * 119.99354 * 189.24263 * 15 13 12 18 18 H 1.48504 * 109.46985 * 60.00699 * 17 15 13 19 19 H 1.48500 * 109.46757 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47564 * 300.00388 * 17 15 13 21 21 C 1.39787 * 120.00306 * 185.67775 * 12 10 9 22 22 C 1.38961 * 120.07792 * 175.18913 * 21 12 10 23 23 C 1.38082 * 119.92435 * 179.97438 * 22 21 12 24 24 C 1.38311 * 120.07409 * 359.97438 * 23 22 21 25 25 C 1.38302 * 120.15721 * 0.02562 * 24 23 22 26 26 C 1.38085 * 120.08210 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47383 * 244.77161 * 3 2 1 28 28 H 1.09006 * 109.47420 * 124.77039 * 3 2 1 29 29 H 1.09007 * 109.47024 * 59.99699 * 5 4 3 30 30 H 1.08998 * 109.47193 * 300.00258 * 5 4 3 31 31 H 1.09000 * 109.46805 * 60.00461 * 9 8 6 32 32 H 1.08994 * 109.47175 * 300.00102 * 9 8 6 33 33 H 0.96994 * 119.99788 * 184.97940 * 16 15 13 34 34 H 1.08007 * 120.03887 * 359.70095 * 22 21 12 35 35 H 1.08001 * 119.96344 * 179.97438 * 23 22 21 36 36 H 1.07996 * 119.92050 * 179.97438 * 24 23 22 37 37 H 1.08006 * 119.96364 * 180.02562 * 25 24 23 38 38 H 1.07990 * 120.04576 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 16 3.2134 -1.7034 -0.1422 5 6 5.0158 -1.4990 -0.1244 6 6 5.6757 -2.8491 -0.2364 7 8 4.9995 -3.8469 -0.3201 8 8 7.0146 -2.9432 -0.2441 9 6 7.5813 -4.2755 -0.3540 10 6 9.0854 -4.1840 -0.3459 11 8 9.6269 -3.0987 -0.3489 12 7 9.8290 -5.3079 -0.3352 13 6 9.2222 -6.5326 -0.4493 14 1 8.5808 -6.7408 -1.2928 15 6 9.4328 -7.5048 0.5200 16 7 10.0606 -7.1981 1.6329 17 14 8.8233 -9.2485 0.2414 18 1 9.4656 -9.8091 -0.9745 19 1 9.1711 -10.0879 1.4160 20 1 7.3493 -9.2349 0.0611 21 6 11.2186 -5.2256 -0.2079 22 6 11.9776 -6.3842 -0.0962 23 6 13.3501 -6.2992 0.0289 24 6 13.9696 -5.0627 0.0426 25 6 13.2173 -3.9074 -0.0683 26 6 11.8443 -3.9849 -0.1937 27 1 2.9711 0.4388 0.9296 28 1 2.9711 0.5869 -0.8442 29 1 5.3183 -1.0233 0.8086 30 1 5.3190 -0.8751 -0.9652 31 1 7.2500 -4.7355 -1.2851 32 1 7.2500 -4.8819 0.4889 33 1 10.2716 -7.8914 2.2776 34 1 11.4941 -7.3500 -0.1029 35 1 13.9406 -7.1993 0.1161 36 1 15.0432 -4.9990 0.1410 37 1 13.7043 -2.9435 -0.0576 38 1 11.2575 -3.0825 -0.2799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058681173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:26 Heat of formation + Delta-G solvation = -45.506429 kcal Electronic energy + Delta-G solvation = -24929.775895 eV Core-core repulsion = 21057.861447 eV Total energy + Delta-G solvation = -3871.914448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.86234 -41.20180 -38.98687 -37.77123 -37.52664 -36.87768 -33.89291 -32.14833 -31.38544 -31.23412 -30.83729 -28.71900 -27.06785 -23.70550 -22.99773 -22.35601 -21.39764 -19.76578 -19.50348 -18.73938 -18.00456 -17.82934 -17.44228 -17.33670 -17.00828 -16.71585 -16.26571 -16.00669 -15.86681 -15.35189 -15.19327 -14.77648 -14.74570 -14.57471 -14.05650 -13.90659 -13.85356 -13.71139 -13.43609 -13.23923 -13.18468 -13.02746 -12.96648 -12.81958 -12.46908 -12.16385 -11.87227 -11.78805 -11.72900 -11.08418 -11.04786 -10.58257 -10.01681 -9.52489 -8.81942 -8.75902 -8.19170 -6.53014 -0.14658 0.64384 0.82460 1.06145 1.15356 1.38636 1.44054 1.48138 1.54639 1.68959 1.87410 2.11195 2.23604 2.74016 2.83202 2.87206 3.34162 3.59947 3.82686 4.07282 4.15559 4.25422 4.26081 4.34388 4.34777 4.39425 4.46305 4.61493 4.94480 5.00204 5.12982 5.29595 5.32535 5.42762 5.79502 5.87340 5.89130 6.00505 6.19731 6.42795 6.53357 6.60882 6.92046 7.30101 7.66233 8.58185 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.002640 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.843339 B =10603.826876 C =12160.271295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.246 3.754 3 C -0.001 4.001 4 S -0.210 6.210 5 C -0.083 4.083 6 C 0.471 3.529 7 O -0.523 6.523 8 O -0.338 6.338 9 C 0.087 3.913 10 C 0.484 3.516 11 O -0.565 6.565 12 N -0.389 5.389 13 C -0.393 4.393 14 H 0.102 0.898 15 C 0.028 3.972 16 N -0.870 5.870 17 Si 0.976 3.024 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.262 1.262 21 C 0.150 3.850 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.161 4.161 25 C -0.118 4.118 26 C -0.213 4.213 27 H 0.170 0.830 28 H 0.172 0.828 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.277 0.723 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 10.615 -2.374 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.071 4.071 3 C -0.151 4.151 4 S 0.014 5.986 5 C -0.231 4.231 6 C 0.313 3.687 7 O -0.412 6.412 8 O -0.254 6.254 9 C 0.010 3.990 10 C 0.275 3.725 11 O -0.450 6.450 12 N -0.098 5.098 13 C -0.520 4.520 14 H 0.119 0.881 15 C -0.180 4.180 16 N -0.502 5.502 17 Si 0.798 3.202 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.187 1.187 21 C 0.054 3.946 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.180 4.180 25 C -0.137 4.137 26 C -0.232 4.232 27 H 0.187 0.813 28 H 0.189 0.811 29 H 0.181 0.819 30 H 0.185 0.815 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.747 9.834 -2.257 11.612 hybrid contribution 0.766 -0.491 0.292 0.955 sum -4.981 9.343 -1.965 10.768 Atomic orbital electron populations 1.81308 1.14346 1.08984 1.10550 1.28388 0.94464 0.92462 0.91830 1.21078 0.83122 0.98032 1.12836 1.88411 1.02604 1.09629 1.97944 1.23142 0.93157 0.94014 1.12737 1.23457 0.80446 0.92457 0.72317 1.90739 1.64748 1.39863 1.45820 1.86448 1.22765 1.32895 1.83288 1.22300 0.90359 0.81246 1.05080 1.20706 0.89348 0.83890 0.78526 1.90196 1.72378 1.29101 1.53329 1.41002 1.02910 1.06101 1.59786 1.19655 1.32935 0.90154 1.09226 0.88060 1.26313 0.94892 1.03952 0.92816 1.70113 1.37033 1.35605 1.07482 0.85252 0.79548 0.77019 0.78368 1.18497 1.20461 1.18670 1.18605 0.83705 0.94498 0.97799 1.21071 0.93784 0.97856 1.01780 1.21163 0.93538 0.98631 1.01007 1.21254 1.00434 0.92078 1.04250 1.21261 0.93037 0.99209 1.00173 1.22826 0.96581 0.98846 1.04995 0.81259 0.81100 0.81866 0.81515 0.87636 0.88671 0.91284 0.86493 0.84892 0.83942 0.84397 0.81976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.73 18.54 20.00 0.37 -10.36 16 2 C 0.25 3.61 15.44 89.44 1.38 4.99 16 3 C 0.00 -0.01 6.42 70.17 0.45 0.45 16 4 S -0.21 -3.36 20.83 -56.49 -1.18 -4.54 16 5 C -0.08 -1.10 6.53 71.23 0.47 -0.64 16 6 C 0.47 12.78 7.98 71.23 0.57 13.35 16 7 O -0.52 -17.92 15.61 21.96 0.34 -17.58 16 8 O -0.34 -11.25 9.76 -44.99 -0.44 -11.69 16 9 C 0.09 3.39 4.77 71.24 0.34 3.73 16 10 C 0.48 22.46 7.65 87.66 0.67 23.13 16 11 O -0.57 -27.31 12.90 15.71 0.20 -27.10 16 12 N -0.39 -19.19 2.62 -458.90 -1.20 -20.40 16 13 C -0.39 -18.85 7.61 84.02 0.64 -18.21 16 14 H 0.10 4.57 7.85 -2.92 -0.02 4.55 16 15 C 0.03 1.32 3.49 84.91 0.30 1.62 16 16 N -0.87 -44.16 11.39 21.65 0.25 -43.92 16 17 Si 0.98 37.22 29.57 68.60 2.03 39.25 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 19 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 21 C 0.15 7.37 6.05 38.22 0.23 7.60 16 22 C -0.12 -5.76 7.87 22.41 0.18 -5.58 16 23 C -0.12 -4.82 10.04 22.25 0.22 -4.60 16 24 C -0.16 -5.64 10.04 22.30 0.22 -5.42 16 25 C -0.12 -4.47 10.04 22.25 0.22 -4.25 16 26 C -0.21 -9.74 9.06 22.41 0.20 -9.53 16 27 H 0.17 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.17 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.11 3.85 8.13 -2.39 -0.02 3.83 16 32 H 0.10 3.91 8.04 -2.39 -0.02 3.89 16 33 H 0.28 13.35 8.32 -92.71 -0.77 12.57 16 34 H 0.12 5.68 5.15 -2.91 -0.01 5.66 16 35 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 38 H 0.16 7.77 4.50 -64.45 -0.29 7.48 16 Total: -1.00 -73.18 354.27 7.30 -65.88 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.84 Total: 23.82 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.09 Total: 6.63 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -0.59 Total: -74.67 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: 0.11 Total: -56.37 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.18 Total: -4.54 kcal Total: -73.18 7.30 -65.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.377 kcal (2) G-P(sol) polarization free energy of solvation -73.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds