Wall clock time and date at job start Tue Mar 31 2020 18:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48499 * 109.47101 * 239.99677 * 3 2 1 5 5 H 1.48490 * 109.47510 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46837 * 120.00316 * 3 2 1 7 7 C 1.38800 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99881 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99669 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99764 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46559 * 180.02562 * 10 9 7 12 12 O 1.20821 * 120.00705 * 359.97438 * 11 10 9 13 13 O 1.34237 * 119.99266 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99583 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.46753 * 179.97438 * 14 13 11 16 16 N 1.31134 * 126.55425 * 90.25122 * 15 14 13 17 17 C 1.34493 * 105.61626 * 180.11742 * 16 15 14 18 18 C 1.50701 * 126.28783 * 179.90266 * 17 16 15 19 19 C 1.50706 * 109.46813 * 269.71214 * 18 17 16 20 20 C 1.38238 * 119.99727 * 90.00361 * 19 18 17 21 21 C 1.38234 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00207 * 270.01852 * 19 18 17 25 25 N 1.29945 * 107.42413 * 359.64119 * 17 16 15 26 26 O 1.21303 * 110.25424 * 0.22418 * 25 17 16 27 27 H 0.97005 * 119.99772 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46869 * 60.00273 * 10 9 7 29 29 H 1.08995 * 109.47177 * 300.00153 * 10 9 7 30 30 H 1.08996 * 109.47645 * 59.99297 * 14 13 11 31 31 H 1.09006 * 109.46839 * 299.99622 * 14 13 11 32 32 H 1.09000 * 109.47134 * 149.71730 * 18 17 16 33 33 H 1.08993 * 109.47324 * 29.71124 * 18 17 16 34 34 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 38 38 H 1.07999 * 120.00008 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7955 -5.5015 -0.0011 13 8 2.8406 -6.3388 -0.0008 14 6 2.2609 -7.6701 -0.0020 15 6 3.3631 -8.6978 -0.0020 16 7 3.9305 -9.2345 1.0514 17 6 4.8528 -10.0874 0.5709 18 6 5.7787 -10.9523 1.3867 19 6 7.0568 -10.2019 1.6596 20 6 7.1686 -9.4161 2.7914 21 6 8.3408 -8.7273 3.0415 22 6 9.4012 -8.8247 2.1601 23 6 9.2876 -9.6066 1.0258 24 6 8.1171 -10.2990 0.7781 25 7 4.7949 -10.0327 -0.7261 26 8 3.9455 -9.2404 -1.0756 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7313 0.8895 29 1 3.1244 -3.7313 -0.8905 30 1 1.6456 -7.7978 -0.8926 31 1 1.6439 -7.7985 0.8874 32 1 6.0040 -11.8648 0.8347 33 1 5.2988 -11.2082 2.3313 34 1 6.3400 -9.3397 3.4798 35 1 8.4280 -8.1130 3.9255 36 1 10.3168 -8.2862 2.3553 37 1 10.1145 -9.6792 0.3349 38 1 8.0295 -10.9124 -0.1065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058681256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:02 Heat of formation + Delta-G solvation = 10.646105 kcal Electronic energy + Delta-G solvation = -24087.083682 eV Core-core repulsion = 20217.604191 eV Total energy + Delta-G solvation = -3869.479491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.92306 -40.29306 -39.63026 -36.67087 -36.37200 -34.10219 -32.52416 -32.36244 -31.22577 -30.16012 -28.16295 -27.87930 -25.58674 -24.06420 -22.95173 -22.53628 -21.46208 -21.09490 -18.52009 -18.11143 -17.84684 -17.29112 -17.04733 -16.62612 -16.28434 -15.55592 -15.43376 -14.97877 -14.87821 -14.46958 -14.19426 -13.89301 -13.74818 -13.70973 -13.04851 -12.78866 -12.76339 -12.59902 -12.55597 -12.16667 -12.07645 -11.45253 -11.39961 -11.32225 -11.15003 -11.08715 -10.87207 -10.86090 -10.46268 -10.14150 -9.95774 -9.24467 -9.14515 -9.14316 -8.43588 -6.65911 -6.31101 -4.04607 0.63037 0.92849 1.08008 1.76973 2.23157 2.44816 2.75009 3.14734 3.19951 3.23503 3.26099 3.42133 3.54297 3.73192 4.11202 4.33609 4.40568 4.57860 4.68235 4.74177 4.81420 4.85607 4.97037 5.04988 5.06137 5.12085 5.18910 5.31503 5.35577 5.42925 5.58246 5.66957 5.68772 5.71385 6.00008 6.11539 6.19347 6.21689 6.34275 6.65023 7.51710 7.80443 7.91183 8.26384 9.14490 10.76275 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.002232 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.064976 B =12540.183574 C =14099.407427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.076 0.924 9 S -0.054 6.054 10 C -0.128 4.128 11 C 0.487 3.513 12 O -0.480 6.480 13 O -0.355 6.355 14 C 0.161 3.839 15 C 0.186 3.814 16 N -0.454 5.454 17 C 0.176 3.824 18 C 0.013 3.987 19 C -0.093 4.093 20 C -0.100 4.100 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.106 4.106 25 N -0.373 5.373 26 O 0.092 5.908 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.696 -22.453 3.046 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.686 4.686 8 H 0.094 0.906 9 S 0.172 5.828 10 C -0.276 4.276 11 C 0.328 3.672 12 O -0.364 6.364 13 O -0.273 6.273 14 C 0.084 3.916 15 C -0.035 4.035 16 N -0.189 5.189 17 C -0.097 4.097 18 C -0.026 4.026 19 C -0.094 4.094 20 C -0.118 4.118 21 C -0.138 4.138 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.125 4.125 25 N -0.078 5.078 26 O 0.030 5.970 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.598 -23.180 2.951 27.036 hybrid contribution 1.757 1.356 -0.095 2.222 sum 15.355 -21.824 2.856 26.837 Atomic orbital electron populations 1.69993 1.05983 1.27833 1.46368 1.25000 0.95076 0.99120 0.94244 0.86170 0.79213 0.80894 0.78943 1.19813 1.20751 1.19818 1.22794 0.95020 0.91070 1.59708 0.90558 1.85419 1.03916 0.96532 1.96927 1.23345 1.07334 0.90081 1.06832 1.23408 0.85049 0.86520 0.72180 1.90702 1.16607 1.85211 1.43872 1.86573 1.41497 1.13794 1.85433 1.20931 0.87383 0.76440 1.06820 1.28104 0.97199 0.97366 0.80825 1.71900 1.08589 1.09813 1.28642 1.25646 0.97350 0.98465 0.88265 1.18891 0.89673 0.94647 0.99341 1.19537 0.94381 0.99465 0.95996 1.21131 0.97918 0.95846 0.96928 1.21201 0.93360 0.99391 0.99816 1.21237 0.98945 0.98580 0.94617 1.21153 0.97818 0.97374 0.97622 1.21079 0.93099 0.99593 0.98679 1.74647 1.07389 1.10143 1.15654 1.85330 1.36018 1.40087 1.35526 0.91951 0.87594 0.87587 0.86987 0.86129 0.87952 0.87414 0.85516 0.85697 0.85915 0.85875 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.25 13.22 55.49 0.73 -24.52 16 2 C 0.08 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.54 -14.73 9.50 30.94 0.29 -14.44 16 8 H 0.08 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.05 -1.39 20.58 -107.50 -2.21 -3.60 16 10 C -0.13 -2.47 6.27 36.01 0.23 -2.25 16 11 C 0.49 8.56 7.97 36.01 0.29 8.85 16 12 O -0.48 -9.49 15.61 -18.75 -0.29 -9.78 16 13 O -0.36 -5.22 10.20 -39.28 -0.40 -5.62 16 14 C 0.16 1.82 6.09 36.00 0.22 2.04 16 15 C 0.19 2.22 8.15 -13.06 -0.11 2.11 16 16 N -0.45 -5.67 11.55 -9.86 -0.11 -5.78 16 17 C 0.18 2.00 7.45 -156.37 -1.17 0.84 16 18 C 0.01 0.11 5.97 -29.03 -0.17 -0.07 16 19 C -0.09 -0.85 5.12 -104.62 -0.54 -1.39 16 20 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 22 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.11 -0.94 9.70 -39.58 -0.38 -1.33 16 25 N -0.37 -4.63 12.16 30.90 0.38 -4.25 16 26 O 0.09 1.12 11.31 18.09 0.20 1.33 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.11 1.91 8.14 -51.92 -0.42 1.48 16 29 H 0.11 1.89 8.14 -51.92 -0.42 1.47 16 30 H 0.11 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.12 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -33.00 362.19 -8.47 -41.47 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.19 Total: -1.34 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -3.01 Total: -9.15 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 1.00 Total: -34.55 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.49 Total: -14.07 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.21 Total: -3.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.00 -8.47 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.113 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds