Wall clock time and date at job start Tue Mar 31 2020 18:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48499 * 109.47101 * 239.99677 * 3 2 1 5 5 H 1.48490 * 109.47510 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46837 * 120.00316 * 3 2 1 7 7 C 1.38800 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99881 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99669 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99764 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46559 * 180.02562 * 10 9 7 12 12 O 1.20821 * 120.00705 * 359.97438 * 11 10 9 13 13 O 1.34237 * 119.99266 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99583 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.46753 * 179.97438 * 14 13 11 16 16 N 1.31134 * 126.55425 * 90.25122 * 15 14 13 17 17 C 1.34493 * 105.61626 * 180.11742 * 16 15 14 18 18 C 1.50701 * 126.28783 * 179.90266 * 17 16 15 19 19 C 1.50706 * 109.46813 * 269.71214 * 18 17 16 20 20 C 1.38238 * 119.99727 * 90.00361 * 19 18 17 21 21 C 1.38234 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00207 * 270.01852 * 19 18 17 25 25 N 1.29945 * 107.42413 * 359.64119 * 17 16 15 26 26 O 1.21303 * 110.25424 * 0.22418 * 25 17 16 27 27 H 0.97005 * 119.99772 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46869 * 60.00273 * 10 9 7 29 29 H 1.08995 * 109.47177 * 300.00153 * 10 9 7 30 30 H 1.08996 * 109.47645 * 59.99297 * 14 13 11 31 31 H 1.09006 * 109.46839 * 299.99622 * 14 13 11 32 32 H 1.09000 * 109.47134 * 149.71730 * 18 17 16 33 33 H 1.08993 * 109.47324 * 29.71124 * 18 17 16 34 34 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 38 38 H 1.07999 * 120.00008 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7955 -5.5015 -0.0011 13 8 2.8406 -6.3388 -0.0008 14 6 2.2609 -7.6701 -0.0020 15 6 3.3631 -8.6978 -0.0020 16 7 3.9305 -9.2345 1.0514 17 6 4.8528 -10.0874 0.5709 18 6 5.7787 -10.9523 1.3867 19 6 7.0568 -10.2019 1.6596 20 6 7.1686 -9.4161 2.7914 21 6 8.3408 -8.7273 3.0415 22 6 9.4012 -8.8247 2.1601 23 6 9.2876 -9.6066 1.0258 24 6 8.1171 -10.2990 0.7781 25 7 4.7949 -10.0327 -0.7261 26 8 3.9455 -9.2404 -1.0756 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7313 0.8895 29 1 3.1244 -3.7313 -0.8905 30 1 1.6456 -7.7978 -0.8926 31 1 1.6439 -7.7985 0.8874 32 1 6.0040 -11.8648 0.8347 33 1 5.2988 -11.2082 2.3313 34 1 6.3400 -9.3397 3.4798 35 1 8.4280 -8.1130 3.9255 36 1 10.3168 -8.2862 2.3553 37 1 10.1145 -9.6792 0.3349 38 1 8.0295 -10.9124 -0.1065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058681256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:01 Heat of formation + Delta-G solvation = -8.680493 kcal Electronic energy + Delta-G solvation = -24087.921746 eV Core-core repulsion = 20217.604191 eV Total energy + Delta-G solvation = -3870.317556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.84170 -41.63159 -40.25420 -37.91728 -37.30956 -34.95964 -34.59677 -33.15992 -31.84859 -31.58173 -29.16241 -28.66449 -27.66825 -24.95923 -23.63348 -23.35004 -22.67170 -21.91455 -19.97192 -19.43309 -18.89586 -18.61264 -17.87446 -17.69685 -17.50278 -16.87843 -16.21670 -16.15998 -16.03622 -15.80097 -15.56639 -15.01827 -14.57094 -14.38758 -14.34903 -14.10010 -13.82523 -13.58125 -13.39535 -13.19397 -13.17633 -12.92298 -12.86743 -12.67581 -12.33830 -12.14750 -12.01390 -11.92400 -11.80900 -11.74752 -11.19268 -11.13344 -10.37918 -9.88512 -9.78812 -8.71349 -8.36279 -6.15292 -0.33413 0.26378 0.43939 0.77957 1.04423 1.13667 1.37589 1.45617 1.48661 1.56793 1.98970 2.24851 2.39847 2.72340 2.98242 2.98992 3.27564 3.61429 3.71077 3.74566 3.86000 3.97777 4.09580 4.13667 4.18158 4.24540 4.30688 4.41124 4.45845 4.55054 4.62891 4.69147 4.75288 5.01961 5.04741 5.10145 5.42761 5.49655 5.57021 5.57372 6.03961 6.19240 6.54872 6.89216 7.05940 8.72407 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.002232 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.064976 B =12540.183574 C =14099.407427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.018 3.982 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.085 0.915 9 S -0.128 6.128 10 C -0.111 4.111 11 C 0.501 3.499 12 O -0.505 6.505 13 O -0.352 6.352 14 C 0.159 3.841 15 C 0.187 3.813 16 N -0.468 5.468 17 C 0.178 3.822 18 C 0.014 3.986 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.118 4.118 25 N -0.387 5.387 26 O 0.086 5.914 27 H 0.273 0.727 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.607 -22.784 3.163 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.698 4.698 8 H 0.104 0.896 9 S 0.099 5.901 10 C -0.259 4.259 11 C 0.343 3.657 12 O -0.392 6.392 13 O -0.268 6.268 14 C 0.083 3.917 15 C -0.034 4.034 16 N -0.204 5.204 17 C -0.095 4.095 18 C -0.025 4.025 19 C -0.104 4.104 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.136 4.136 25 N -0.093 5.093 26 O 0.026 5.974 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.523 -23.534 3.061 28.358 hybrid contribution 1.246 1.292 -0.116 1.798 sum 16.769 -22.242 2.945 28.010 Atomic orbital electron populations 1.70142 1.07826 1.28846 1.47619 1.26068 0.95959 1.03147 0.93588 0.85027 0.77841 0.75819 0.79489 1.18735 1.20398 1.18746 1.23163 0.95532 0.91697 1.59383 0.89648 1.85477 1.08674 0.98780 1.97177 1.23120 1.04583 0.89698 1.08492 1.22857 0.84576 0.86562 0.71684 1.90702 1.17657 1.85600 1.45203 1.86494 1.40855 1.14699 1.84794 1.21251 0.87353 0.74363 1.08710 1.28140 0.97137 0.97348 0.80799 1.71925 1.09105 1.10331 1.29021 1.26179 0.97058 0.98062 0.88183 1.19085 0.88878 0.94603 0.99906 1.19672 0.94801 0.99787 0.96168 1.21318 0.98426 0.96273 0.97313 1.21472 0.93407 0.99561 1.00515 1.21540 0.99597 0.98574 0.94462 1.21458 0.98258 0.97075 0.98031 1.21304 0.93357 0.99956 0.99025 1.74648 1.07766 1.10670 1.16259 1.85316 1.36154 1.40260 1.35645 0.91836 0.85979 0.85810 0.84728 0.84862 0.86153 0.85925 0.85154 0.84401 0.84081 0.84122 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.61 13.22 21.65 0.29 -53.32 16 2 C 0.02 0.97 5.49 84.86 0.47 1.44 16 3 Si 1.00 42.19 29.55 68.60 2.03 44.22 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.55 -30.03 9.50 67.95 0.65 -29.38 16 8 H 0.09 4.33 7.80 -2.92 -0.02 4.31 16 9 S -0.13 -6.63 20.58 -56.49 -1.16 -7.80 16 10 C -0.11 -4.14 6.27 71.24 0.45 -3.70 16 11 C 0.50 17.01 7.97 71.24 0.57 17.58 16 12 O -0.51 -19.70 15.61 21.98 0.34 -19.36 16 13 O -0.35 -9.70 10.20 -51.48 -0.53 -10.22 16 14 C 0.16 3.32 6.09 71.23 0.43 3.76 16 15 C 0.19 4.20 8.15 88.38 0.72 4.92 16 16 N -0.47 -11.06 11.55 -303.17 -3.50 -14.56 16 17 C 0.18 3.82 7.45 138.46 1.03 4.85 16 18 C 0.01 0.20 5.97 29.10 0.17 0.38 16 19 C -0.10 -1.77 5.12 -19.86 -0.10 -1.87 16 20 C -0.12 -2.01 9.70 22.27 0.22 -1.80 16 21 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 22 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 23 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 24 C -0.12 -1.95 9.70 22.27 0.22 -1.73 16 25 N -0.39 -9.14 12.16 -60.30 -0.73 -9.87 16 26 O 0.09 2.00 11.31 74.79 0.85 2.85 16 27 H 0.27 15.00 8.31 -92.70 -0.77 14.22 16 28 H 0.12 4.20 8.14 -2.40 -0.02 4.18 16 29 H 0.12 4.21 8.14 -2.40 -0.02 4.19 16 30 H 0.13 2.25 8.13 -2.39 -0.02 2.23 16 31 H 0.13 2.52 8.13 -2.38 -0.02 2.50 16 32 H 0.12 1.32 8.09 -2.39 -0.02 1.30 16 33 H 0.12 1.42 8.08 -2.39 -0.02 1.40 16 34 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -70.86 362.19 4.16 -66.70 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.09 Total: 12.24 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 5.49 Total: -10.87 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -3.95 Total: -77.76 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: 0.66 Total: -26.74 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -6.63 SS G_CDS: -1.16 Total: -7.80 kcal Total: -70.86 4.16 -66.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.021 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds