Wall clock time and date at job start Tue Mar 31 2020 17:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47005 * 2 1 4 4 C 1.36936 * 119.99739 * 275.96923 * 3 2 1 5 5 H 1.08002 * 120.00259 * 146.60134 * 4 3 2 6 6 C 1.38814 * 120.00172 * 326.59396 * 4 3 2 7 7 N 1.31616 * 120.00383 * 336.11766 * 6 4 3 8 8 Si 1.86803 * 119.99838 * 156.11093 * 6 4 3 9 9 H 1.48498 * 109.47084 * 90.00622 * 8 6 4 10 10 H 1.48502 * 109.47091 * 210.00588 * 8 6 4 11 11 H 1.48498 * 109.47341 * 329.99998 * 8 6 4 12 12 S 1.65598 * 120.00369 * 95.97465 * 3 2 1 13 13 O 1.42097 * 106.40483 * 156.45814 * 12 3 2 14 14 O 1.42104 * 106.40225 * 23.53572 * 12 3 2 15 15 C 1.76204 * 107.21838 * 269.99713 * 12 3 2 16 16 C 1.38250 * 119.99943 * 269.97917 * 15 12 3 17 17 C 1.38215 * 120.00115 * 179.97438 * 16 15 12 18 18 C 1.38256 * 120.00004 * 359.97438 * 17 16 15 19 19 C 1.38212 * 119.99763 * 0.08856 * 18 17 16 20 20 S 1.76199 * 120.00074 * 179.97438 * 19 18 17 21 21 N 1.65595 * 107.21976 * 269.91229 * 20 19 18 22 22 O 1.42110 * 106.40198 * 23.44846 * 20 19 18 23 23 O 1.42098 * 106.40571 * 156.36918 * 20 19 18 24 24 C 1.38211 * 119.99840 * 89.99224 * 15 12 3 25 25 H 1.09000 * 109.47712 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47384 * 300.00812 * 1 2 3 27 27 H 1.09005 * 109.46990 * 60.00382 * 1 2 3 28 28 H 1.08993 * 109.47269 * 239.99555 * 2 1 3 29 29 H 1.09001 * 109.46586 * 119.99891 * 2 1 3 30 30 H 0.96993 * 120.00701 * 180.02562 * 7 6 4 31 31 H 1.08002 * 120.00283 * 359.97438 * 16 15 12 32 32 H 1.07998 * 119.99990 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.00086 * 180.02562 * 18 17 16 34 34 H 0.96998 * 119.99934 * 359.97438 * 21 20 19 35 35 H 0.96997 * 120.00543 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.00270 * 359.70980 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1302 2.0678 -1.1795 5 1 1.9552 3.1333 -1.2029 6 6 2.4687 1.3944 -2.3452 7 7 3.1245 0.2551 -2.2804 8 14 1.9931 2.1050 -4.0060 9 1 3.0809 2.9893 -4.4959 10 1 1.7797 0.9998 -4.9746 11 1 0.7406 2.8908 -3.8680 12 16 2.4350 2.1122 1.4263 13 8 3.3459 3.1508 1.0937 14 8 2.7470 1.0667 2.3368 15 6 0.9881 2.9004 2.0507 16 6 0.7076 4.2081 1.7005 17 6 -0.4276 4.8263 2.1898 18 6 -1.2830 4.1367 3.0291 19 6 -1.0019 2.8298 3.3802 20 16 -2.0916 1.9512 4.4503 21 7 -1.5758 2.2174 6.0012 22 8 -3.3605 2.5808 4.3358 23 8 -1.8830 0.5700 4.1895 24 6 0.1338 2.2115 2.8907 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.3614 -0.2153 -3.0949 31 1 1.3755 4.7467 1.0446 32 1 -0.6470 5.8476 1.9159 33 1 -2.1703 4.6196 3.4111 34 1 -0.7996 2.7754 6.1651 35 1 -2.0499 1.8153 6.7458 36 1 0.3505 1.1885 3.1607 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067717312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:25 Heat of formation + Delta-G solvation = -108.982325 kcal Electronic energy + Delta-G solvation = -25468.173588 eV Core-core repulsion = 21593.117475 eV Total energy + Delta-G solvation = -3875.056113 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -39.22416 -37.26020 -36.28271 -35.94468 -35.93473 -34.81251 -33.40940 -31.76084 -31.53594 -31.30075 -29.25775 -24.67398 -23.59398 -23.27997 -21.65743 -19.93739 -19.10448 -18.32800 -17.57602 -17.19007 -16.92570 -16.35142 -16.12240 -15.86562 -15.41003 -15.14341 -14.70101 -14.29606 -14.04939 -13.51312 -13.31293 -12.81454 -12.51316 -12.44556 -12.29049 -12.24468 -12.18179 -12.02185 -11.91945 -11.34490 -11.13808 -11.09644 -10.99902 -10.95998 -10.89442 -10.71426 -10.48021 -10.32609 -10.21738 -9.90447 -9.67951 -9.32832 -9.11232 -7.79125 -6.32761 -4.01185 0.21163 0.57362 0.91583 1.36434 2.88505 3.16112 3.16806 3.24407 3.27790 3.54131 4.05303 4.30911 4.38235 4.64007 4.72121 4.74278 4.96515 5.02043 5.07132 5.34842 5.54577 5.71112 5.75181 5.79279 6.03528 6.05927 6.10722 6.28626 6.36569 6.59298 6.61169 6.77662 6.91905 7.25881 7.36546 7.73966 8.34944 8.93441 9.30443 10.68561 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.004336 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.486585 B = 6455.658727 C = 6512.541678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.838 5.838 4 C -0.286 4.286 5 H 0.091 0.909 6 C 0.041 3.959 7 N -0.852 5.852 8 Si 0.916 3.084 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.270 1.270 12 S 2.624 3.376 13 O -0.968 6.968 14 O -0.992 6.992 15 C -0.671 4.671 16 C 0.041 3.959 17 C -0.162 4.162 18 C 0.018 3.982 19 C -0.701 4.701 20 S 2.702 3.298 21 N -1.251 6.251 22 O -0.966 6.966 23 O -0.956 6.956 24 C 0.075 3.925 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.269 0.731 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.417 0.583 35 H 0.419 0.581 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.998 5.810 11.163 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.018 4.018 3 N -0.671 5.671 4 C -0.422 4.422 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.492 5.492 8 Si 0.742 3.258 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.194 1.194 12 S 2.719 3.281 13 O -0.958 6.958 14 O -0.982 6.982 15 C -0.754 4.754 16 C 0.021 3.979 17 C -0.181 4.181 18 C -0.002 4.002 19 C -0.790 4.790 20 S 2.791 3.209 21 N -0.926 5.926 22 O -0.955 6.955 23 O -0.945 6.945 24 C 0.055 3.945 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.244 0.756 35 H 0.250 0.750 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.929 5.165 11.171 15.205 hybrid contribution -0.194 1.109 -0.614 1.283 sum -9.123 6.274 10.557 15.298 Atomic orbital electron populations 1.22219 0.98546 1.00469 1.01218 1.21438 0.91747 0.83654 1.05006 1.52619 1.76370 1.20800 1.17261 1.19065 1.45372 0.94006 0.83757 0.89112 1.25329 0.94954 0.96806 0.99662 1.69958 1.33434 1.16659 1.29120 0.86129 0.79266 0.78721 0.81707 1.20222 1.20699 1.19444 1.05309 0.73709 0.74091 0.74955 1.93444 1.59090 1.59655 1.83594 1.93430 1.82462 1.55546 1.66714 1.31897 1.24898 1.06588 1.11979 1.21378 0.93974 0.91970 0.90533 1.21417 0.95646 1.01107 0.99958 1.21128 0.96567 0.91214 0.91281 1.30581 1.15948 1.09007 1.23454 1.01528 0.73109 0.73734 0.72506 1.53069 1.45418 1.68090 1.25997 1.93593 1.38832 1.77180 1.85880 1.93634 1.85345 1.31513 1.84043 1.20759 0.87981 0.98577 0.87191 0.92974 0.94552 0.92159 0.86477 0.91997 0.92080 0.83273 0.84207 0.83732 0.75569 0.75034 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 10.20 37.16 0.38 -2.82 16 2 C 0.11 2.43 6.01 -4.04 -0.02 2.40 16 3 N -0.84 -19.89 2.85 -59.91 -0.17 -20.06 16 4 C -0.29 -7.11 8.87 -15.06 -0.13 -7.25 16 5 H 0.09 2.15 7.94 -52.49 -0.42 1.74 16 6 C 0.04 1.01 4.98 -17.43 -0.09 0.92 16 7 N -0.85 -22.19 11.27 55.49 0.63 -21.56 16 8 Si 0.92 19.32 29.62 -169.99 -5.03 14.29 16 9 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 12 S 2.62 58.37 5.65 -107.50 -0.61 57.76 16 13 O -0.97 -23.64 16.50 -57.17 -0.94 -24.58 16 14 O -0.99 -23.34 15.83 -57.17 -0.91 -24.25 16 15 C -0.67 -12.08 5.97 -39.59 -0.24 -12.32 16 16 C 0.04 0.63 9.52 -39.59 -0.38 0.25 16 17 C -0.16 -1.99 10.05 -39.58 -0.40 -2.39 16 18 C 0.02 0.21 9.52 -39.58 -0.38 -0.17 16 19 C -0.70 -9.43 5.94 -39.58 -0.24 -9.66 16 20 S 2.70 32.16 6.28 -107.50 -0.68 31.48 16 21 N -1.25 -9.28 9.55 60.35 0.58 -8.70 16 22 O -0.97 -13.38 17.28 -57.17 -0.99 -14.37 16 23 O -0.96 -14.79 17.28 -57.17 -0.99 -15.78 16 24 C 0.08 1.23 8.00 -39.58 -0.32 0.91 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.66 7.12 -51.93 -0.37 0.29 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.12 2.84 5.31 -51.93 -0.28 2.56 16 29 H 0.06 1.35 6.90 -51.93 -0.36 0.99 16 30 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.15 2.20 7.62 -52.49 -0.40 1.80 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.14 1.31 7.62 -52.49 -0.40 0.91 16 34 H 0.42 2.24 8.92 -34.46 -0.31 1.93 16 35 H 0.42 2.23 8.96 -34.47 -0.31 1.92 16 36 H 0.16 2.52 7.18 -52.49 -0.38 2.15 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -34.88 332.71 -9.52 -44.40 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.62 Total: 6.46 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -1.81 Total: -30.11 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 1.03 Total: -50.33 kcal Atomic # 8 Polarization: -75.15 SS G_CDS: -3.82 Total: -78.98 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 16 Polarization: 90.53 SS G_CDS: -1.28 Total: 89.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.88 -9.52 -44.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067717312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.582 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds