Wall clock time and date at job start Tue Mar 31 2020 17:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47005 * 2 1 4 4 C 1.36936 * 119.99739 * 275.96923 * 3 2 1 5 5 H 1.08002 * 120.00259 * 146.60134 * 4 3 2 6 6 C 1.38814 * 120.00172 * 326.59396 * 4 3 2 7 7 N 1.31616 * 120.00383 * 336.11766 * 6 4 3 8 8 Si 1.86803 * 119.99838 * 156.11093 * 6 4 3 9 9 H 1.48498 * 109.47084 * 90.00622 * 8 6 4 10 10 H 1.48502 * 109.47091 * 210.00588 * 8 6 4 11 11 H 1.48498 * 109.47341 * 329.99998 * 8 6 4 12 12 S 1.65598 * 120.00369 * 95.97465 * 3 2 1 13 13 O 1.42097 * 106.40483 * 156.45814 * 12 3 2 14 14 O 1.42104 * 106.40225 * 23.53572 * 12 3 2 15 15 C 1.76204 * 107.21838 * 269.99713 * 12 3 2 16 16 C 1.38250 * 119.99943 * 269.97917 * 15 12 3 17 17 C 1.38215 * 120.00115 * 179.97438 * 16 15 12 18 18 C 1.38256 * 120.00004 * 359.97438 * 17 16 15 19 19 C 1.38212 * 119.99763 * 0.08856 * 18 17 16 20 20 S 1.76199 * 120.00074 * 179.97438 * 19 18 17 21 21 N 1.65595 * 107.21976 * 269.91229 * 20 19 18 22 22 O 1.42110 * 106.40198 * 23.44846 * 20 19 18 23 23 O 1.42098 * 106.40571 * 156.36918 * 20 19 18 24 24 C 1.38211 * 119.99840 * 89.99224 * 15 12 3 25 25 H 1.09000 * 109.47712 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47384 * 300.00812 * 1 2 3 27 27 H 1.09005 * 109.46990 * 60.00382 * 1 2 3 28 28 H 1.08993 * 109.47269 * 239.99555 * 2 1 3 29 29 H 1.09001 * 109.46586 * 119.99891 * 2 1 3 30 30 H 0.96993 * 120.00701 * 180.02562 * 7 6 4 31 31 H 1.08002 * 120.00283 * 359.97438 * 16 15 12 32 32 H 1.07998 * 119.99990 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.00086 * 180.02562 * 18 17 16 34 34 H 0.96998 * 119.99934 * 359.97438 * 21 20 19 35 35 H 0.96997 * 120.00543 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.00270 * 359.70980 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1302 2.0678 -1.1795 5 1 1.9552 3.1333 -1.2029 6 6 2.4687 1.3944 -2.3452 7 7 3.1245 0.2551 -2.2804 8 14 1.9931 2.1050 -4.0060 9 1 3.0809 2.9893 -4.4959 10 1 1.7797 0.9998 -4.9746 11 1 0.7406 2.8908 -3.8680 12 16 2.4350 2.1122 1.4263 13 8 3.3459 3.1508 1.0937 14 8 2.7470 1.0667 2.3368 15 6 0.9881 2.9004 2.0507 16 6 0.7076 4.2081 1.7005 17 6 -0.4276 4.8263 2.1898 18 6 -1.2830 4.1367 3.0291 19 6 -1.0019 2.8298 3.3802 20 16 -2.0916 1.9512 4.4503 21 7 -1.5758 2.2174 6.0012 22 8 -3.3605 2.5808 4.3358 23 8 -1.8830 0.5700 4.1895 24 6 0.1338 2.2115 2.8907 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.3614 -0.2153 -3.0949 31 1 1.3755 4.7467 1.0446 32 1 -0.6470 5.8476 1.9159 33 1 -2.1703 4.6196 3.4111 34 1 -0.7996 2.7754 6.1651 35 1 -2.0499 1.8153 6.7458 36 1 0.3505 1.1885 3.1607 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067717312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:23 Heat of formation + Delta-G solvation = -138.388329 kcal Electronic energy + Delta-G solvation = -25469.448728 eV Core-core repulsion = 21593.117475 eV Total energy + Delta-G solvation = -3876.331253 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.36010 -38.31969 -38.11633 -37.73867 -37.00458 -36.67140 -34.11548 -33.59154 -32.69190 -32.45611 -30.98889 -26.52794 -24.74539 -24.46013 -23.38146 -21.06007 -20.33121 -19.86699 -18.84757 -18.42773 -18.16215 -17.98428 -17.30591 -17.18080 -16.61168 -16.42886 -16.31729 -15.83199 -15.25162 -15.11986 -14.59171 -14.41961 -14.16520 -13.72090 -13.57052 -13.48373 -13.28181 -13.25930 -13.15414 -13.09504 -12.99503 -12.88178 -12.64546 -12.63726 -12.17812 -12.16388 -11.98267 -11.78430 -11.58120 -11.40620 -11.00196 -10.84429 -10.44089 -9.63943 -8.18870 -5.93884 -0.76740 -0.55971 -0.37663 -0.19154 1.49147 1.51816 1.62533 1.89212 2.13326 2.34695 2.58854 2.65583 2.87160 3.14130 3.26617 3.56957 3.65212 3.81067 3.87799 4.26397 4.32014 4.37644 4.57759 4.66851 4.69131 4.70361 4.88035 4.92655 4.98275 5.23522 5.25914 5.46719 5.54102 5.57608 5.91738 6.30328 6.47761 7.07573 7.42559 8.83142 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.004336 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.486585 B = 6455.658727 C = 6512.541678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.103 3.897 3 N -0.852 5.852 4 C -0.309 4.309 5 H 0.095 0.905 6 C -0.003 4.003 7 N -0.890 5.890 8 Si 0.977 3.023 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.258 1.258 12 S 2.634 3.366 13 O -1.000 7.000 14 O -1.016 7.016 15 C -0.684 4.684 16 C 0.024 3.976 17 C -0.146 4.146 18 C 0.030 3.970 19 C -0.698 4.698 20 S 2.729 3.271 21 N -1.233 6.233 22 O -0.980 6.980 23 O -0.994 6.994 24 C 0.059 3.941 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.270 0.730 31 H 0.150 0.850 32 H 0.184 0.816 33 H 0.185 0.815 34 H 0.430 0.570 35 H 0.432 0.568 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 7.953 12.177 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.684 5.684 4 C -0.444 4.444 5 H 0.113 0.887 6 C -0.207 4.207 7 N -0.530 5.530 8 Si 0.800 3.200 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.182 1.182 12 S 2.735 3.265 13 O -0.990 6.990 14 O -1.006 7.006 15 C -0.773 4.773 16 C 0.004 3.996 17 C -0.165 4.165 18 C 0.011 3.989 19 C -0.785 4.785 20 S 2.817 3.183 21 N -0.914 5.914 22 O -0.969 6.969 23 O -0.983 6.983 24 C 0.038 3.962 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.167 0.833 32 H 0.202 0.798 33 H 0.202 0.798 34 H 0.260 0.740 35 H 0.266 0.734 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.478 7.278 12.142 18.224 hybrid contribution 0.523 0.525 -0.706 1.023 sum -10.954 7.803 11.436 17.654 Atomic orbital electron populations 1.22132 0.96136 1.02010 1.01358 1.21435 0.93811 0.83354 1.03801 1.52688 1.77001 1.21149 1.17584 1.19327 1.46024 0.94344 0.84661 0.88705 1.26127 0.94685 0.97139 1.02744 1.70065 1.34859 1.18179 1.29903 0.85204 0.79174 0.78013 0.77597 1.20286 1.20554 1.18202 1.04129 0.74675 0.73490 0.74178 1.93401 1.61525 1.59961 1.84073 1.93395 1.83814 1.56725 1.66621 1.31048 1.23847 1.07960 1.14449 1.21577 0.95638 0.91095 0.91261 1.21876 0.93595 1.02776 0.98290 1.21710 0.97206 0.90294 0.89671 1.30767 1.14600 1.09823 1.23303 1.00614 0.72294 0.72517 0.72887 1.52628 1.45970 1.68205 1.24588 1.93578 1.39630 1.77193 1.86475 1.93597 1.85746 1.33982 1.85022 1.20731 0.89124 0.98534 0.87803 0.90756 0.93726 0.92565 0.88374 0.92482 0.92061 0.83260 0.79828 0.79800 0.74015 0.73427 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.10 10.20 71.98 0.73 -5.37 16 2 C 0.10 4.77 6.01 86.38 0.52 5.29 16 3 N -0.85 -41.73 2.85 -343.47 -0.98 -42.71 16 4 C -0.31 -15.75 8.87 84.03 0.75 -15.00 16 5 H 0.10 4.60 7.94 -2.91 -0.02 4.57 16 6 C 0.00 -0.13 4.98 84.86 0.42 0.29 16 7 N -0.89 -47.94 11.27 21.65 0.24 -47.70 16 8 Si 0.98 39.94 29.62 68.60 2.03 41.98 16 9 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 12 S 2.63 120.90 5.65 -56.49 -0.32 120.58 16 13 O -1.00 -50.46 16.50 -128.00 -2.11 -52.57 16 14 O -1.02 -49.70 15.83 -128.00 -2.03 -51.72 16 15 C -0.68 -24.37 5.97 22.27 0.13 -24.24 16 16 C 0.02 0.69 9.52 22.27 0.21 0.90 16 17 C -0.15 -2.98 10.05 22.27 0.22 -2.75 16 18 C 0.03 0.58 9.52 22.27 0.21 0.79 16 19 C -0.70 -16.84 5.94 22.27 0.13 -16.71 16 20 S 2.73 57.96 6.28 -56.49 -0.35 57.60 16 21 N -1.23 -14.53 9.55 37.02 0.35 -14.17 16 22 O -0.98 -23.83 17.28 -128.00 -2.21 -26.04 16 23 O -0.99 -29.52 17.28 -128.00 -2.21 -31.73 16 24 C 0.06 1.86 8.00 22.27 0.18 2.04 16 25 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.04 1.62 7.12 -2.39 -0.02 1.61 16 27 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.10 4.98 5.31 -2.39 -0.01 4.97 16 29 H 0.06 2.62 6.90 -2.39 -0.02 2.60 16 30 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.15 4.28 7.62 -2.91 -0.02 4.26 16 32 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.18 2.18 7.62 -2.91 -0.02 2.16 16 34 H 0.43 3.20 8.92 -96.75 -0.86 2.34 16 35 H 0.43 3.27 8.96 -96.75 -0.87 2.40 16 36 H 0.15 4.82 7.18 -2.91 -0.02 4.80 16 Total: -1.00 -77.60 332.71 -4.65 -82.25 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -0.58 Total: 18.99 kcal Atomic # 6 Polarization: -58.27 SS G_CDS: 3.51 Total: -54.76 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -0.38 Total: -104.58 kcal Atomic # 8 Polarization: -153.50 SS G_CDS: -8.56 Total: -162.06 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 178.86 SS G_CDS: -0.67 Total: 178.19 kcal Total: -77.60 -4.65 -82.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067717312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.141 kcal (2) G-P(sol) polarization free energy of solvation -77.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds