Wall clock time and date at job start Tue Mar 31 2020 18:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37045 * 126.40513 * 2 1 4 4 C 1.34613 * 106.83069 * 179.97438 * 3 2 1 5 5 S 1.76202 * 125.97167 * 180.02562 * 4 3 2 6 6 O 1.42096 * 106.39960 * 203.53927 * 5 4 3 7 7 O 1.42104 * 106.40071 * 336.45847 * 5 4 3 8 8 N 1.65594 * 107.21939 * 89.99846 * 5 4 3 9 9 C 1.46964 * 120.59388 * 269.71652 * 8 5 4 10 10 C 1.53821 * 108.39678 * 124.76086 * 9 8 5 11 11 N 1.46962 * 108.57774 * 49.63604 * 10 9 8 12 12 C 1.36942 * 120.59264 * 124.63034 * 11 10 9 13 13 H 1.08003 * 119.99638 * 208.22452 * 12 11 10 14 14 C 1.38810 * 119.99992 * 28.21521 * 12 11 10 15 15 N 1.31624 * 119.99976 * 17.60451 * 14 12 11 16 16 Si 1.86797 * 120.00170 * 197.59672 * 14 12 11 17 17 H 1.48503 * 109.46979 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47405 * 120.00418 * 16 14 12 19 19 H 1.48503 * 109.47422 * 240.00671 * 16 14 12 20 20 C 1.46965 * 118.81578 * 304.64544 * 11 10 9 21 21 C 1.46967 * 120.59454 * 89.99962 * 8 5 4 22 22 N 1.34201 * 108.04879 * 359.74795 * 4 3 2 23 23 C 1.30614 * 109.25919 * 0.42627 * 22 4 3 24 24 Cl 1.73603 * 125.66264 * 179.83431 * 23 22 4 25 25 H 1.08994 * 109.47318 * 269.99450 * 1 2 3 26 26 H 1.08995 * 109.46795 * 30.00123 * 1 2 3 27 27 H 1.09003 * 109.46841 * 149.99786 * 1 2 3 28 28 H 1.07995 * 126.58740 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.61090 * 244.53893 * 9 8 5 30 30 H 1.08990 * 109.61021 * 5.05844 * 9 8 5 31 31 H 1.09002 * 109.73966 * 289.85151 * 10 9 8 32 32 H 1.08994 * 109.67559 * 169.38961 * 10 9 8 33 33 H 0.96998 * 119.99818 * 179.97438 * 15 14 12 34 34 H 1.09002 * 109.61182 * 295.48877 * 20 11 10 35 35 H 1.08997 * 109.75471 * 175.05260 * 20 11 10 36 36 H 1.09006 * 109.61037 * 354.94695 * 21 8 5 37 37 H 1.08998 * 109.61122 * 115.28339 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2784 1.1030 0.0000 4 6 3.5467 0.6520 0.0006 5 16 4.9996 1.6489 0.0015 6 8 6.0377 0.8454 -0.5425 7 8 4.6237 2.9065 -0.5430 8 7 5.4030 1.9260 1.5834 9 6 4.8745 3.0977 2.2959 10 6 4.1644 2.6111 3.5707 11 7 5.0623 1.6931 4.2854 12 6 5.3966 1.9227 5.5934 13 1 6.3429 1.5724 5.9784 14 6 4.5193 2.6058 6.4244 15 7 3.2534 2.7296 6.0855 16 14 5.1350 3.3493 8.0235 17 1 6.5866 3.0730 8.1712 18 1 4.9103 4.8171 8.0059 19 1 4.3979 2.7494 9.1646 20 6 5.5953 0.5244 3.5713 21 6 6.3009 1.0080 2.2983 22 7 3.5110 -0.6895 0.0065 23 6 2.2669 -1.0874 0.0005 24 17 1.7325 -2.7391 0.0007 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.9625 2.1357 0.0004 29 1 5.6945 3.7643 2.5626 30 1 4.1645 3.6240 1.6582 31 1 3.2451 2.0897 3.3038 32 1 3.9296 3.4635 4.2081 33 1 2.6403 3.2066 6.6664 34 1 4.7778 -0.1454 3.3044 35 1 6.3074 -0.0023 4.2066 36 1 6.5332 0.1540 1.6619 37 1 7.2215 1.5284 2.5624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123873421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:17 Heat of formation + Delta-G solvation = 24.038670 kcal Electronic energy + Delta-G solvation = -25429.404690 eV Core-core repulsion = 21590.365845 eV Total energy + Delta-G solvation = -3839.038845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39199 -37.55790 -37.23306 -36.97246 -35.56709 -34.52821 -33.80162 -31.08438 -30.13594 -29.92109 -27.57225 -26.38831 -23.27169 -22.85796 -22.62356 -21.67068 -19.98656 -18.74286 -18.16258 -17.44016 -16.40105 -16.20215 -15.92362 -15.73665 -15.13626 -14.78675 -14.55882 -13.93425 -13.71941 -13.61458 -13.59495 -13.38443 -13.23291 -12.92308 -12.20562 -12.11691 -11.92033 -11.88294 -11.80403 -11.50800 -11.37690 -11.11900 -10.82284 -10.72083 -10.43016 -10.35993 -10.23439 -10.19850 -9.94796 -9.71175 -9.01731 -8.74565 -8.47708 -6.69296 -5.85018 -3.27735 0.65893 1.00966 1.37428 2.27884 2.52380 3.33777 3.35091 3.42594 3.45019 4.01773 4.09218 4.36930 4.45463 4.66948 4.70161 4.99688 5.11933 5.20407 5.31582 5.53928 5.58099 5.80108 5.84502 5.99648 6.14011 6.26801 6.35486 6.39031 6.48894 6.68410 6.87159 6.97110 7.25306 7.33921 7.52972 7.74916 8.37781 9.14273 9.77381 10.34786 11.22906 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.004350 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.231496 B = 6434.602059 C = 7342.875679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.444 5.444 3 C 0.087 3.913 4 C -0.545 4.545 5 S 2.721 3.279 6 O -0.948 6.948 7 O -0.960 6.960 8 N -0.981 5.981 9 C 0.093 3.907 10 C 0.158 3.842 11 N -0.588 5.588 12 C -0.249 4.249 13 H 0.068 0.932 14 C 0.001 3.999 15 N -0.905 5.905 16 Si 0.903 3.097 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.291 1.291 20 C 0.132 3.868 21 C 0.106 3.894 22 N -0.382 5.382 23 C 0.240 3.760 24 Cl 0.041 6.959 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.204 0.796 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.019 0.981 32 H 0.099 0.901 33 H 0.253 0.747 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 -4.452 -13.085 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.128 5.128 3 C -0.053 4.053 4 C -0.754 4.754 5 S 2.806 3.194 6 O -0.938 6.938 7 O -0.950 6.950 8 N -0.821 5.821 9 C -0.033 4.033 10 C 0.031 3.969 11 N -0.311 5.311 12 C -0.379 4.379 13 H 0.086 0.914 14 C -0.197 4.197 15 N -0.550 5.550 16 Si 0.733 3.267 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.218 1.218 20 C 0.004 3.996 21 C -0.021 4.021 22 N -0.102 5.102 23 C -0.050 4.050 24 Cl 0.068 6.932 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.221 0.779 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.037 0.963 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.243 -4.806 -13.702 15.806 hybrid contribution -1.476 0.226 1.268 1.959 sum -7.720 -4.580 -12.434 15.336 Atomic orbital electron populations 1.22337 0.75047 1.05604 1.05157 1.45496 1.08563 1.05603 1.53131 1.22746 0.89157 0.93003 1.00423 1.33868 1.17366 1.01924 1.22260 1.01365 0.72666 0.72634 0.72763 1.93543 1.53112 1.70680 1.76475 1.93565 1.84614 1.39893 1.76907 1.57407 1.59476 1.34825 1.30399 1.22463 0.98935 0.85816 0.96085 1.21242 0.90295 0.95599 0.89782 1.43911 1.55210 1.22982 1.09013 1.19270 0.99334 1.33512 0.85765 0.91429 1.25034 0.94618 1.02291 0.97734 1.70028 1.01907 1.44698 1.38324 0.86217 0.78366 0.78897 0.83254 1.20186 1.21533 1.21831 1.21272 0.96362 0.90097 0.91833 1.22058 0.92437 0.92218 0.95338 1.70278 1.16402 1.08845 1.14655 1.23469 0.86732 0.84587 1.10229 1.98420 1.88710 1.08761 1.97276 0.88999 0.88301 0.88827 0.77929 0.91074 0.90526 0.96302 0.88285 0.93702 0.95966 0.91593 0.89881 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 11.01 59.85 0.66 1.06 16 2 N -0.44 -5.26 3.16 -122.38 -0.39 -5.65 16 3 C 0.09 1.15 11.31 -16.50 -0.19 0.96 16 4 C -0.54 -8.86 7.13 -17.80 -0.13 -8.98 16 5 S 2.72 46.69 5.85 -107.50 -0.63 46.06 16 6 O -0.95 -18.42 16.71 -57.17 -0.96 -19.37 16 7 O -0.96 -16.81 16.52 -57.17 -0.94 -17.75 16 8 N -0.98 -17.46 3.26 -113.00 -0.37 -17.83 16 9 C 0.09 1.70 6.58 -3.36 -0.02 1.68 16 10 C 0.16 3.53 5.54 -3.36 -0.02 3.51 16 11 N -0.59 -14.15 2.97 -171.76 -0.51 -14.66 16 12 C -0.25 -6.57 9.58 -15.06 -0.14 -6.71 16 13 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 14 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 15 N -0.90 -25.11 11.20 55.49 0.62 -24.49 16 16 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.13 2.73 6.67 -3.59 -0.02 2.71 16 21 C 0.11 1.91 6.55 -3.59 -0.02 1.88 16 22 N -0.38 -6.58 11.26 -10.94 -0.12 -6.71 16 23 C 0.24 3.42 8.51 -90.22 -0.77 2.66 16 24 Cl 0.04 0.46 28.77 -51.86 -1.49 -1.03 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.48 7.81 -51.93 -0.41 0.07 16 28 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.08 1.21 7.08 -51.93 -0.37 0.85 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 2.45 5.98 -51.93 -0.31 2.13 16 33 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 36 H 0.08 1.39 7.09 -51.93 -0.37 1.03 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -34.37 337.39 -9.84 -44.21 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.37 Total: -2.57 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.74 Total: -1.28 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -0.77 Total: -69.33 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.90 Total: -37.12 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: 46.69 SS G_CDS: -0.63 Total: 46.06 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -1.49 Total: -1.03 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.37 -9.84 -44.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123873421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.249 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds