Wall clock time and date at job start Tue Mar 31 2020 18:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37045 * 126.40513 * 2 1 4 4 C 1.34613 * 106.83069 * 179.97438 * 3 2 1 5 5 S 1.76202 * 125.97167 * 180.02562 * 4 3 2 6 6 O 1.42096 * 106.39960 * 203.53927 * 5 4 3 7 7 O 1.42104 * 106.40071 * 336.45847 * 5 4 3 8 8 N 1.65594 * 107.21939 * 89.99846 * 5 4 3 9 9 C 1.46964 * 120.59388 * 269.71652 * 8 5 4 10 10 C 1.53821 * 108.39678 * 124.76086 * 9 8 5 11 11 N 1.46962 * 108.57774 * 49.63604 * 10 9 8 12 12 C 1.36942 * 120.59264 * 124.63034 * 11 10 9 13 13 H 1.08003 * 119.99638 * 208.22452 * 12 11 10 14 14 C 1.38810 * 119.99992 * 28.21521 * 12 11 10 15 15 N 1.31624 * 119.99976 * 17.60451 * 14 12 11 16 16 Si 1.86797 * 120.00170 * 197.59672 * 14 12 11 17 17 H 1.48503 * 109.46979 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47405 * 120.00418 * 16 14 12 19 19 H 1.48503 * 109.47422 * 240.00671 * 16 14 12 20 20 C 1.46965 * 118.81578 * 304.64544 * 11 10 9 21 21 C 1.46967 * 120.59454 * 89.99962 * 8 5 4 22 22 N 1.34201 * 108.04879 * 359.74795 * 4 3 2 23 23 C 1.30614 * 109.25919 * 0.42627 * 22 4 3 24 24 Cl 1.73603 * 125.66264 * 179.83431 * 23 22 4 25 25 H 1.08994 * 109.47318 * 269.99450 * 1 2 3 26 26 H 1.08995 * 109.46795 * 30.00123 * 1 2 3 27 27 H 1.09003 * 109.46841 * 149.99786 * 1 2 3 28 28 H 1.07995 * 126.58740 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.61090 * 244.53893 * 9 8 5 30 30 H 1.08990 * 109.61021 * 5.05844 * 9 8 5 31 31 H 1.09002 * 109.73966 * 289.85151 * 10 9 8 32 32 H 1.08994 * 109.67559 * 169.38961 * 10 9 8 33 33 H 0.96998 * 119.99818 * 179.97438 * 15 14 12 34 34 H 1.09002 * 109.61182 * 295.48877 * 20 11 10 35 35 H 1.08997 * 109.75471 * 175.05260 * 20 11 10 36 36 H 1.09006 * 109.61037 * 354.94695 * 21 8 5 37 37 H 1.08998 * 109.61122 * 115.28339 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2784 1.1030 0.0000 4 6 3.5467 0.6520 0.0006 5 16 4.9996 1.6489 0.0015 6 8 6.0377 0.8454 -0.5425 7 8 4.6237 2.9065 -0.5430 8 7 5.4030 1.9260 1.5834 9 6 4.8745 3.0977 2.2959 10 6 4.1644 2.6111 3.5707 11 7 5.0623 1.6931 4.2854 12 6 5.3966 1.9227 5.5934 13 1 6.3429 1.5724 5.9784 14 6 4.5193 2.6058 6.4244 15 7 3.2534 2.7296 6.0855 16 14 5.1350 3.3493 8.0235 17 1 6.5866 3.0730 8.1712 18 1 4.9103 4.8171 8.0059 19 1 4.3979 2.7494 9.1646 20 6 5.5953 0.5244 3.5713 21 6 6.3009 1.0080 2.2983 22 7 3.5110 -0.6895 0.0065 23 6 2.2669 -1.0874 0.0005 24 17 1.7325 -2.7391 0.0007 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.9625 2.1357 0.0004 29 1 5.6945 3.7643 2.5626 30 1 4.1645 3.6240 1.6582 31 1 3.2451 2.0897 3.3038 32 1 3.9296 3.4635 4.2081 33 1 2.6403 3.2066 6.6664 34 1 4.7778 -0.1454 3.3044 35 1 6.3074 -0.0023 4.2066 36 1 6.5332 0.1540 1.6619 37 1 7.2215 1.5284 2.5624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123873421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:17 Heat of formation + Delta-G solvation = -0.405378 kcal Electronic energy + Delta-G solvation = -25430.464663 eV Core-core repulsion = 21590.365845 eV Total energy + Delta-G solvation = -3840.098818 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.40682 -39.18349 -38.36825 -38.18396 -36.97341 -35.57484 -35.43620 -32.91491 -31.79059 -30.98792 -28.30101 -28.19237 -25.03025 -24.47153 -23.75687 -22.66510 -21.60266 -20.05450 -19.45902 -18.86667 -17.91970 -17.29182 -17.14364 -17.04468 -16.68137 -16.16756 -15.62384 -15.45484 -15.38237 -15.29419 -15.03236 -14.60567 -14.28993 -13.72889 -13.65803 -13.49132 -13.25713 -13.13681 -13.00341 -12.89693 -12.85655 -12.69786 -12.62042 -12.44752 -12.07447 -11.98473 -11.78789 -11.54420 -11.40735 -11.12168 -10.58193 -10.22883 -10.01439 -8.60754 -7.84728 -5.30502 -0.66167 0.02559 0.36019 1.13828 1.49228 1.52785 1.62114 1.68576 2.03430 2.54036 2.71104 3.00742 3.29900 3.64324 3.66614 3.74570 3.87044 4.01284 4.25666 4.33568 4.49403 4.56594 4.59069 4.66307 4.71195 4.76051 4.81177 4.89646 5.14342 5.24824 5.32949 5.50808 5.61980 5.67107 5.79649 6.27421 6.41104 7.16921 7.85697 8.39190 9.20649 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.004350 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.231496 B = 6434.602059 C = 7342.875679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.437 5.437 3 C 0.100 3.900 4 C -0.578 4.578 5 S 2.741 3.259 6 O -0.975 6.975 7 O -0.964 6.964 8 N -0.984 5.984 9 C 0.105 3.895 10 C 0.165 3.835 11 N -0.605 5.605 12 C -0.259 4.259 13 H 0.067 0.933 14 C -0.045 4.045 15 N -0.932 5.932 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.288 1.288 19 H -0.296 1.296 20 C 0.133 3.867 21 C 0.114 3.886 22 N -0.425 5.425 23 C 0.229 3.771 24 Cl 0.060 6.940 25 H 0.099 0.901 26 H 0.129 0.871 27 H 0.109 0.891 28 H 0.237 0.763 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.004 0.996 32 H 0.073 0.927 33 H 0.250 0.750 34 H 0.009 0.991 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.780 -4.045 -13.710 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.119 5.119 3 C -0.043 4.043 4 C -0.789 4.789 5 S 2.828 3.172 6 O -0.965 6.965 7 O -0.954 6.954 8 N -0.824 5.824 9 C -0.022 4.022 10 C 0.038 3.962 11 N -0.329 5.329 12 C -0.389 4.389 13 H 0.085 0.915 14 C -0.241 4.241 15 N -0.579 5.579 16 Si 0.793 3.207 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.224 1.224 20 C 0.006 3.994 21 C -0.013 4.013 22 N -0.146 5.146 23 C -0.062 4.062 24 Cl 0.088 6.912 25 H 0.117 0.883 26 H 0.147 0.853 27 H 0.128 0.872 28 H 0.253 0.747 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.022 0.978 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.000 -4.399 -14.344 16.556 hybrid contribution -1.350 -0.016 1.427 1.964 sum -8.349 -4.415 -12.918 16.002 Atomic orbital electron populations 1.22797 0.71904 1.08032 1.06379 1.45789 1.10314 1.04446 1.51395 1.23313 0.88393 0.94604 0.97976 1.33491 1.18065 1.01948 1.25382 1.00564 0.72419 0.72211 0.71994 1.93503 1.54878 1.71243 1.76864 1.93547 1.84737 1.40282 1.76863 1.57409 1.59695 1.34725 1.30544 1.22274 0.99243 0.85926 0.94726 1.21088 0.90062 0.94195 0.90890 1.44162 1.55506 1.24352 1.08838 1.19549 0.99265 1.33170 0.86931 0.91512 1.25697 0.94759 1.03008 1.00612 1.70155 1.02777 1.45564 1.39373 0.85258 0.78042 0.77787 0.79603 1.19372 1.21507 1.22351 1.21334 0.96094 0.89125 0.92891 1.21937 0.92372 0.92822 0.94175 1.70142 1.18518 1.09563 1.16361 1.23711 0.86708 0.86016 1.09726 1.98421 1.88335 1.07306 1.97178 0.88293 0.85259 0.87216 0.74651 0.90712 0.87840 0.97828 0.90879 0.94041 0.97256 0.91160 0.88748 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.49 11.01 127.77 1.41 1.90 16 2 N -0.44 -9.41 3.16 -541.09 -1.71 -11.12 16 3 C 0.10 2.41 11.31 83.05 0.94 3.35 16 4 C -0.58 -18.22 7.13 83.50 0.60 -17.63 16 5 S 2.74 91.35 5.85 -56.49 -0.33 91.02 16 6 O -0.97 -37.48 16.71 -128.00 -2.14 -39.62 16 7 O -0.96 -32.08 16.52 -128.00 -2.11 -34.19 16 8 N -0.98 -34.12 3.26 -511.42 -1.67 -35.78 16 9 C 0.10 3.70 6.58 86.57 0.57 4.27 16 10 C 0.16 7.36 5.54 86.57 0.48 7.84 16 11 N -0.61 -29.20 2.97 -697.33 -2.07 -31.27 16 12 C -0.26 -13.68 9.58 84.03 0.80 -12.87 16 13 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 14 C -0.05 -2.41 4.90 84.86 0.42 -2.00 16 15 N -0.93 -52.27 11.20 21.65 0.24 -52.03 16 16 Si 0.96 43.28 29.59 68.60 2.03 45.31 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 20 C 0.13 5.49 6.67 86.42 0.58 6.06 16 21 C 0.11 4.01 6.55 86.42 0.57 4.57 16 22 N -0.43 -14.46 11.26 -188.52 -2.12 -16.59 16 23 C 0.23 6.29 8.51 180.21 1.53 7.82 16 24 Cl 0.06 1.29 28.77 -2.72 -0.08 1.21 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.11 0.79 7.81 -2.39 -0.02 0.77 16 28 H 0.24 3.79 8.06 -2.91 -0.02 3.76 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.10 3.08 7.08 -2.39 -0.02 3.06 16 31 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.07 3.66 5.98 -2.39 -0.01 3.64 16 33 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.07 2.78 7.94 -2.39 -0.02 2.76 16 36 H 0.09 3.12 7.09 -2.38 -0.02 3.11 16 37 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -73.92 337.39 -0.97 -74.89 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.10 Total: 4.84 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 7.89 Total: 3.32 kcal Atomic # 7 Polarization: -139.47 SS G_CDS: -7.32 Total: -146.79 kcal Atomic # 8 Polarization: -69.56 SS G_CDS: -4.25 Total: -73.81 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 91.35 SS G_CDS: -0.33 Total: 91.02 kcal Atomic # 17 Polarization: 1.29 SS G_CDS: -0.08 Total: 1.21 kcal Total: -73.92 -0.97 -74.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123873421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.487 kcal (2) G-P(sol) polarization free energy of solvation -73.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds