Wall clock time and date at job start Tue Mar 31 2020 17:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46722 * 2 1 4 4 H 1.09002 * 109.46563 * 178.48448 * 3 2 1 5 5 C 1.50699 * 109.46919 * 298.47722 * 3 2 1 6 6 H 1.07998 * 119.99823 * 120.00887 * 5 3 2 7 7 C 1.37871 * 120.00196 * 300.00064 * 5 3 2 8 8 N 1.31512 * 120.00383 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00047 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47009 * 60.00473 * 9 7 5 11 11 H 1.48499 * 109.47468 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47268 * 300.00442 * 9 7 5 13 13 N 1.46500 * 109.47308 * 58.48173 * 3 2 1 14 14 S 1.65599 * 119.99674 * 96.29025 * 13 3 2 15 15 O 1.42106 * 106.39644 * 178.65289 * 14 13 3 16 16 O 1.42097 * 106.40595 * 311.56933 * 14 13 3 17 17 C 1.76196 * 107.22029 * 65.11660 * 14 13 3 18 18 C 1.33387 * 125.20726 * 89.71488 * 17 14 13 19 19 C 1.38427 * 114.92372 * 179.79423 * 18 17 14 20 20 N 1.48030 * 122.53949 * 180.23587 * 19 18 17 21 21 O 1.21801 * 120.00251 * 0.28224 * 20 19 18 22 22 O 1.21799 * 119.99587 * 180.28922 * 20 19 18 23 23 C 1.33382 * 114.91961 * 0.50260 * 19 18 17 24 24 C 1.50704 * 125.20332 * 179.77191 * 23 19 18 25 25 S 1.75882 * 125.20284 * 270.02229 * 17 14 13 26 26 H 1.09008 * 109.47244 * 295.76508 * 1 2 3 27 27 H 1.09003 * 109.47105 * 175.76765 * 1 2 3 28 28 H 1.09003 * 109.47510 * 55.76643 * 1 2 3 29 29 H 1.08997 * 109.47313 * 119.99404 * 2 1 3 30 30 H 1.08993 * 109.46972 * 239.99905 * 2 1 3 31 31 H 0.96997 * 120.00913 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99502 * 276.28805 * 13 3 2 33 33 H 1.08001 * 122.53659 * 359.97438 * 18 17 14 34 34 H 1.09006 * 109.46695 * 179.97438 * 24 23 19 35 35 H 1.08994 * 109.46900 * 299.97865 * 24 23 19 36 36 H 1.08999 * 109.47125 * 59.98533 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1296 1.4427 0.0272 5 6 1.5686 2.1419 -1.2489 6 1 0.9455 3.0208 -1.1732 7 6 1.9328 1.6599 -2.4882 8 7 2.6912 0.5894 -2.5805 9 14 1.3480 2.5264 -4.0363 10 1 1.8424 3.9267 -4.0366 11 1 1.8727 1.8155 -5.2298 12 1 -0.1366 2.5256 -4.0732 13 7 1.5219 2.1437 1.1774 14 16 2.4501 2.2654 2.5434 15 8 1.6899 3.0177 3.4792 16 8 2.9417 0.9596 2.8123 17 6 3.8524 3.2509 2.1350 18 6 3.9168 4.5788 2.2426 19 6 5.1266 5.1366 1.8663 20 7 5.3838 6.5933 1.9233 21 8 4.5149 7.3502 2.3177 22 8 6.4644 7.0349 1.5757 23 6 6.0410 4.2626 1.4432 24 6 7.4294 4.6158 0.9754 25 16 5.3790 2.6347 1.5158 26 1 -0.3634 0.4467 0.9256 27 1 -0.3633 -1.0249 -0.0758 28 1 -0.3634 0.5781 -0.8496 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 2.9473 0.2500 -3.4523 32 1 0.6353 2.5365 1.1568 33 1 3.0888 5.1736 2.5992 34 1 7.9585 3.7068 0.6891 35 1 7.3644 5.2842 0.1169 36 1 7.9694 5.1117 1.7820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127136345.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:04 Heat of formation + Delta-G solvation = -71.231562 kcal Electronic energy + Delta-G solvation = -25004.169001 eV Core-core repulsion = 21130.749885 eV Total energy + Delta-G solvation = -3873.419117 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.39908 -39.54959 -38.48461 -37.82508 -37.78977 -37.09285 -34.15655 -33.66302 -32.09415 -30.07767 -28.30302 -26.72648 -25.44593 -24.88243 -22.44512 -21.91876 -20.21012 -20.13689 -19.39120 -18.89528 -18.81026 -18.62026 -18.04231 -17.38648 -17.00391 -16.40510 -15.54844 -15.40309 -15.16619 -14.97747 -14.59019 -14.42479 -14.09702 -13.76693 -13.65410 -13.51264 -13.36259 -13.27990 -12.98001 -12.84280 -12.79482 -12.68421 -12.54987 -12.43619 -12.35812 -12.22456 -12.04564 -11.86673 -11.51887 -11.07799 -10.87302 -10.55824 -10.21410 -10.07953 -8.12359 -6.24273 -1.39550 -0.84188 -0.64329 -0.51662 -0.07322 0.68468 0.81863 1.43821 1.47374 1.51717 1.96991 2.43983 2.54104 3.04055 3.17761 3.26822 3.36301 3.82792 4.04808 4.18254 4.40999 4.45623 4.53260 4.67358 4.78683 4.85003 4.88275 5.14615 5.23778 5.46032 5.55547 5.70953 5.72351 6.04561 6.10132 6.38246 6.45011 6.83381 7.43923 8.91766 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.005216 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.078047 B = 5366.582520 C = 6482.334667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.137 4.137 3 C 0.280 3.720 4 H 0.031 0.969 5 C -0.530 4.530 6 H 0.065 0.935 7 C 0.031 3.969 8 N -0.906 5.906 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.273 1.273 13 N -1.090 6.090 14 S 2.729 3.271 15 O -0.975 6.975 16 O -0.969 6.969 17 C -0.808 4.808 18 C 0.041 3.959 19 C -0.112 4.112 20 N 0.052 4.948 21 O -0.201 6.201 22 O -0.135 6.135 23 C -0.070 4.070 24 C -0.105 4.105 25 S 0.373 5.627 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.265 0.735 32 H 0.421 0.579 33 H 0.181 0.819 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 3.968 5.993 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.177 4.177 3 C 0.175 3.825 4 H 0.048 0.952 5 C -0.569 4.569 6 H 0.083 0.917 7 C -0.170 4.170 8 N -0.545 5.545 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.853 5.853 14 S 2.813 3.187 15 O -0.966 6.966 16 O -0.959 6.959 17 C -1.008 5.008 18 C 0.009 3.991 19 C -0.209 4.209 20 N 0.568 4.432 21 O -0.406 6.406 22 O -0.358 6.358 23 C -0.194 4.194 24 C -0.163 4.163 25 S 0.638 5.362 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.258 0.742 33 H 0.198 0.802 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.198 1.272 6.331 10.436 hybrid contribution -0.931 2.677 -1.034 3.017 sum 7.267 3.948 5.297 9.822 Atomic orbital electron populations 1.21516 0.96018 0.99903 1.01015 1.21917 0.96628 0.98402 1.00723 1.18437 0.93170 0.89100 0.81790 0.95181 1.21418 1.32558 1.12382 0.90547 0.91666 1.25417 0.95092 0.95407 1.01097 1.69929 1.36343 1.22923 1.25258 0.85831 0.78879 0.78570 0.79645 1.20360 1.21204 1.19814 1.55383 1.28572 1.70119 1.31246 1.00865 0.72373 0.72938 0.72531 1.93545 1.69241 1.73282 1.60490 1.93578 1.81625 1.36749 1.83960 1.36016 1.25587 1.11917 1.27230 1.19415 0.96740 0.92415 0.90576 1.20167 0.98881 0.81394 1.20465 1.43074 1.00034 1.02542 0.97518 1.94576 1.40325 1.54984 1.50734 1.94458 1.11847 1.80296 1.49228 1.26041 1.02016 0.97991 0.93359 1.21098 0.85733 1.05296 1.04141 1.84671 0.98546 0.99249 1.53702 0.93359 0.93953 0.93102 0.94822 0.90308 0.92515 0.74221 0.80200 0.87028 0.87213 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.51 71.98 0.68 -4.16 16 2 C -0.14 -5.90 5.69 30.60 0.17 -5.72 16 3 C 0.28 11.96 2.47 44.25 0.11 12.07 16 4 H 0.03 1.34 7.63 -2.39 -0.02 1.32 16 5 C -0.53 -24.60 7.51 25.60 0.19 -24.41 16 6 H 0.07 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.03 1.50 5.30 84.65 0.45 1.94 16 8 N -0.91 -45.39 11.31 21.44 0.24 -45.15 16 9 Si 0.94 39.21 29.54 68.60 2.03 41.23 16 10 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 13 N -1.09 -39.27 4.75 -172.51 -0.82 -40.09 16 14 S 2.73 93.31 5.79 -56.49 -0.33 92.98 16 15 O -0.98 -35.18 17.80 -128.00 -2.28 -37.46 16 16 O -0.97 -36.85 17.33 -128.00 -2.22 -39.07 16 17 C -0.81 -24.81 6.43 66.72 0.43 -24.38 16 18 C 0.04 1.20 9.38 21.22 0.20 1.40 16 19 C -0.11 -3.12 6.79 35.32 0.24 -2.88 16 20 N 0.05 1.54 4.45 -48.99 -0.22 1.32 16 21 O -0.20 -6.50 18.78 18.89 0.35 -6.15 16 22 O -0.13 -3.64 16.59 18.89 0.31 -3.33 16 23 C -0.07 -1.63 6.51 24.59 0.16 -1.47 16 24 C -0.10 -1.57 8.76 71.24 0.62 -0.95 16 25 S 0.37 9.71 22.97 -56.49 -1.30 8.41 16 26 H 0.05 1.64 7.59 -2.38 -0.02 1.63 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 2.05 7.12 -2.39 -0.02 2.03 16 29 H 0.03 1.41 7.80 -2.39 -0.02 1.39 16 30 H 0.08 3.79 6.03 -2.39 -0.01 3.77 16 31 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 32 H 0.42 13.68 8.68 -96.75 -0.84 12.84 16 33 H 0.18 5.00 7.93 -2.91 -0.02 4.97 16 34 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.11 1.64 7.72 -2.39 -0.02 1.62 16 36 H 0.12 1.49 7.73 -2.39 -0.02 1.47 16 Total: -1.00 -59.06 339.62 -0.66 -59.72 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.30 Total: 16.14 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 3.26 Total: -48.56 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -0.80 Total: -83.91 kcal Atomic # 8 Polarization: -82.18 SS G_CDS: -3.83 Total: -86.01 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 103.02 SS G_CDS: -1.62 Total: 101.39 kcal Total: -59.06 -0.66 -59.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127136345.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.516 kcal (2) G-P(sol) polarization free energy of solvation -59.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds