Wall clock time and date at job start Tue Mar 31 2020 17:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47155 * 2 1 4 4 H 1.09007 * 109.47043 * 307.03925 * 3 2 1 5 5 C 1.50699 * 109.47274 * 187.04630 * 3 2 1 6 6 H 1.08009 * 119.99844 * 239.99691 * 5 3 2 7 7 C 1.37874 * 120.00240 * 59.71732 * 5 3 2 8 8 N 1.31512 * 120.00138 * 0.27991 * 7 5 3 9 9 Si 1.86804 * 120.00097 * 180.27938 * 7 5 3 10 10 H 1.48496 * 109.47263 * 90.00215 * 9 7 5 11 11 H 1.48496 * 109.47141 * 210.00359 * 9 7 5 12 12 H 1.48498 * 109.46922 * 329.99891 * 9 7 5 13 13 N 1.46498 * 109.47654 * 67.04172 * 3 2 1 14 14 S 1.65603 * 120.00218 * 214.48748 * 13 3 2 15 15 O 1.42095 * 106.40181 * 178.47194 * 14 13 3 16 16 O 1.42101 * 106.40223 * 311.39333 * 14 13 3 17 17 C 1.76202 * 107.22009 * 64.93064 * 14 13 3 18 18 S 1.70939 * 125.58943 * 258.32231 * 17 14 13 19 19 C 1.70774 * 91.13646 * 179.97438 * 18 17 14 20 20 N 1.28629 * 110.58112 * 0.34470 * 19 18 17 21 21 C 1.33603 * 115.76888 * 359.73665 * 20 19 18 22 22 C 1.47111 * 123.15562 * 180.02562 * 21 20 19 23 23 O 1.21556 * 120.00258 * 173.48845 * 22 21 20 24 24 O 1.34804 * 119.99793 * 353.48822 * 22 21 20 25 25 C 1.45203 * 116.99841 * 180.02562 * 24 22 21 26 26 H 1.09004 * 109.46654 * 62.40924 * 1 2 3 27 27 H 1.08999 * 109.47432 * 182.40481 * 1 2 3 28 28 H 1.08996 * 109.47636 * 302.40849 * 1 2 3 29 29 H 1.08997 * 109.47389 * 239.99032 * 2 1 3 30 30 H 1.09001 * 109.46508 * 119.99171 * 2 1 3 31 31 H 0.97000 * 120.00314 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00005 * 34.48366 * 13 3 2 33 33 H 1.07995 * 124.71069 * 180.02562 * 19 18 17 34 34 H 1.08990 * 109.46938 * 299.99716 * 25 24 22 35 35 H 1.09004 * 109.46803 * 60.00041 * 25 24 22 36 36 H 1.08998 * 109.46532 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5775 1.9914 -0.8204 5 6 3.5369 1.4460 -0.1743 6 1 4.1681 1.8816 0.5863 7 6 4.1010 0.8883 -1.3019 8 7 3.3325 0.3580 -2.2281 9 14 5.9569 0.8858 -1.5143 10 1 6.5213 -0.3533 -0.9217 11 1 6.2898 0.9390 -2.9605 12 1 6.5350 2.0699 -0.8295 13 7 1.6949 2.0825 1.2717 14 16 1.3113 3.6931 1.3109 15 8 0.9950 3.9974 2.6624 16 8 2.3277 4.3655 0.5802 17 6 -0.1789 3.8968 0.3931 18 16 -0.2888 4.4888 -1.2068 19 6 -1.9880 4.3195 -1.1889 20 7 -2.3849 3.8620 -0.0541 21 6 -1.4243 3.6169 0.8415 22 6 -1.6952 3.0915 2.1885 23 8 -0.7728 2.7778 2.9155 24 8 -2.9664 2.9578 2.6168 25 6 -3.1588 2.4335 3.9571 26 1 -0.3633 0.4760 -0.9109 27 1 -0.3634 -1.0267 0.0431 28 1 -0.3634 0.5507 0.8675 29 1 1.8934 -0.5140 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 3.7294 -0.0341 -3.0216 32 1 1.6910 1.5630 2.0908 33 1 -2.6394 4.5674 -2.0138 34 1 -2.7211 1.4376 4.0238 35 1 -2.6746 3.0923 4.6779 36 1 -4.2252 2.3775 4.1756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134705541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:27 Heat of formation + Delta-G solvation = -103.201561 kcal Electronic energy + Delta-G solvation = -25902.585631 eV Core-core repulsion = 22027.780191 eV Total energy + Delta-G solvation = -3874.805440 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.78992 -39.21646 -36.78833 -36.28162 -35.86618 -35.20070 -32.19035 -31.12816 -30.65895 -28.28530 -26.63338 -26.02253 -23.21109 -23.05671 -20.77635 -20.21546 -19.70409 -18.44860 -17.30080 -16.95000 -16.77158 -16.46776 -16.38225 -15.74926 -15.34009 -14.85407 -14.67312 -14.36576 -13.71429 -13.66921 -13.14684 -13.08257 -12.97344 -12.22854 -12.13600 -11.93759 -11.63408 -11.49330 -11.38273 -11.33072 -11.21714 -10.96784 -10.78634 -10.77005 -10.43049 -10.23456 -10.20956 -9.95923 -9.88900 -9.82732 -9.69810 -9.22856 -8.44897 -8.27148 -6.09169 -4.15708 -0.10697 0.89786 1.08039 1.48727 1.64236 2.60079 2.98411 3.29998 3.36606 3.43504 3.68833 3.93838 4.24861 4.42231 4.69037 4.81635 5.08014 5.17717 5.19876 5.38336 5.45625 5.57255 6.04396 6.11223 6.24155 6.26435 6.45478 6.74654 6.86458 7.05314 7.06867 7.53657 7.61509 7.69490 7.87811 8.08881 8.21320 8.88019 9.50561 10.95205 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.015651 B = 0.005105 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.538250 B = 5483.864749 C = 5760.883014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.279 3.721 4 H 0.037 0.963 5 C -0.518 4.518 6 H 0.066 0.934 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.271 1.271 13 N -1.084 6.084 14 S 2.707 3.293 15 O -0.942 6.942 16 O -0.940 6.940 17 C -0.801 4.801 18 S 0.374 5.626 19 C -0.002 4.002 20 N -0.436 5.436 21 C 0.146 3.854 22 C 0.519 3.481 23 O -0.443 6.443 24 O -0.338 6.338 25 C 0.034 3.966 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.412 0.588 33 H 0.213 0.787 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.782 5.067 2.855 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.054 0.946 5 C -0.558 4.558 6 H 0.084 0.916 7 C -0.138 4.138 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.847 5.847 14 S 2.785 3.215 15 O -0.932 6.932 16 O -0.930 6.930 17 C -1.003 5.003 18 S 0.634 5.366 19 C -0.300 4.300 20 N -0.151 5.151 21 C 0.003 3.997 22 C 0.357 3.643 23 O -0.326 6.326 24 O -0.254 6.254 25 C -0.060 4.060 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.126 0.874 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.246 0.754 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.000 5.957 2.387 13.608 hybrid contribution -0.067 -0.979 0.620 1.161 sum -12.068 4.977 3.007 13.396 Atomic orbital electron populations 1.21831 0.99206 0.99596 0.99847 1.21879 0.91788 0.99396 1.03494 1.18599 0.95384 0.90470 0.78100 0.94565 1.21521 0.91219 1.37779 1.05264 0.91595 1.24888 0.98480 0.94893 0.95518 1.69831 1.34861 1.39135 1.09436 0.86502 0.85188 0.78570 0.77294 1.20667 1.21139 1.19576 1.55453 1.82566 1.28845 1.17877 1.02021 0.72197 0.74151 0.73180 1.93612 1.84050 1.83628 1.31879 1.93636 1.51940 1.73235 1.74190 1.37446 1.25494 1.20584 1.16738 1.83049 1.02740 1.48849 1.01918 1.28961 1.00357 1.01181 0.99459 1.67109 1.34209 1.12891 1.00841 1.18812 0.86471 1.00804 0.93590 1.19906 0.82130 0.77022 0.85259 1.91113 1.44022 1.43032 1.54440 1.86629 1.27881 1.76626 1.34304 1.23360 1.02943 0.99557 0.80098 0.94043 0.94320 0.94629 0.87357 0.93857 0.92682 0.75383 0.77029 0.91499 0.91444 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.84 37.16 0.37 -2.42 16 2 C -0.13 -2.75 5.37 -26.73 -0.14 -2.90 16 3 C 0.28 6.51 2.13 -69.09 -0.15 6.36 16 4 H 0.04 0.88 7.84 -51.92 -0.41 0.48 16 5 C -0.52 -13.69 8.84 -34.44 -0.30 -13.99 16 6 H 0.07 1.78 7.81 -52.48 -0.41 1.37 16 7 C 0.06 1.69 5.28 -17.82 -0.09 1.59 16 8 N -0.89 -23.74 11.28 55.43 0.63 -23.12 16 9 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 13 N -1.08 -22.65 4.93 -5.88 -0.03 -22.68 16 14 S 2.71 55.71 5.06 -107.50 -0.54 55.17 16 15 O -0.94 -20.33 14.50 -67.33 -0.98 -21.30 16 16 O -0.94 -21.57 17.55 -57.17 -1.00 -22.57 16 17 C -0.80 -14.20 6.28 29.68 0.19 -14.01 16 18 S 0.37 5.21 22.70 -107.50 -2.44 2.76 16 19 C 0.00 -0.03 12.17 51.42 0.63 0.60 16 20 N -0.44 -6.56 10.60 -12.38 -0.13 -6.69 16 21 C 0.15 2.51 6.70 -84.55 -0.57 1.94 16 22 C 0.52 9.02 7.84 34.33 0.27 9.29 16 23 O -0.44 -8.40 12.31 -27.61 -0.34 -8.74 16 24 O -0.34 -5.04 10.51 -40.78 -0.43 -5.47 16 25 C 0.03 0.37 10.57 101.05 1.07 1.43 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.64 7.76 -51.93 -0.40 0.24 16 29 H 0.11 2.64 5.90 -51.93 -0.31 2.33 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.41 7.91 8.83 -34.47 -0.30 7.61 16 33 H 0.21 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -32.81 338.68 -7.85 -40.66 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.92 Total: 3.12 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 1.26 Total: -12.10 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.47 Total: -52.49 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -2.75 Total: -58.09 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 60.92 SS G_CDS: -2.98 Total: 57.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.81 -7.85 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134705541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.539 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds