Wall clock time and date at job start Tue Mar 31 2020 17:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47155 * 2 1 4 4 H 1.09007 * 109.47043 * 307.03925 * 3 2 1 5 5 C 1.50699 * 109.47274 * 187.04630 * 3 2 1 6 6 H 1.08009 * 119.99844 * 239.99691 * 5 3 2 7 7 C 1.37874 * 120.00240 * 59.71732 * 5 3 2 8 8 N 1.31512 * 120.00138 * 0.27991 * 7 5 3 9 9 Si 1.86804 * 120.00097 * 180.27938 * 7 5 3 10 10 H 1.48496 * 109.47263 * 90.00215 * 9 7 5 11 11 H 1.48496 * 109.47141 * 210.00359 * 9 7 5 12 12 H 1.48498 * 109.46922 * 329.99891 * 9 7 5 13 13 N 1.46498 * 109.47654 * 67.04172 * 3 2 1 14 14 S 1.65603 * 120.00218 * 214.48748 * 13 3 2 15 15 O 1.42095 * 106.40181 * 178.47194 * 14 13 3 16 16 O 1.42101 * 106.40223 * 311.39333 * 14 13 3 17 17 C 1.76202 * 107.22009 * 64.93064 * 14 13 3 18 18 S 1.70939 * 125.58943 * 258.32231 * 17 14 13 19 19 C 1.70774 * 91.13646 * 179.97438 * 18 17 14 20 20 N 1.28629 * 110.58112 * 0.34470 * 19 18 17 21 21 C 1.33603 * 115.76888 * 359.73665 * 20 19 18 22 22 C 1.47111 * 123.15562 * 180.02562 * 21 20 19 23 23 O 1.21556 * 120.00258 * 173.48845 * 22 21 20 24 24 O 1.34804 * 119.99793 * 353.48822 * 22 21 20 25 25 C 1.45203 * 116.99841 * 180.02562 * 24 22 21 26 26 H 1.09004 * 109.46654 * 62.40924 * 1 2 3 27 27 H 1.08999 * 109.47432 * 182.40481 * 1 2 3 28 28 H 1.08996 * 109.47636 * 302.40849 * 1 2 3 29 29 H 1.08997 * 109.47389 * 239.99032 * 2 1 3 30 30 H 1.09001 * 109.46508 * 119.99171 * 2 1 3 31 31 H 0.97000 * 120.00314 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00005 * 34.48366 * 13 3 2 33 33 H 1.07995 * 124.71069 * 180.02562 * 19 18 17 34 34 H 1.08990 * 109.46938 * 299.99716 * 25 24 22 35 35 H 1.09004 * 109.46803 * 60.00041 * 25 24 22 36 36 H 1.08998 * 109.46532 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5775 1.9914 -0.8204 5 6 3.5369 1.4460 -0.1743 6 1 4.1681 1.8816 0.5863 7 6 4.1010 0.8883 -1.3019 8 7 3.3325 0.3580 -2.2281 9 14 5.9569 0.8858 -1.5143 10 1 6.5213 -0.3533 -0.9217 11 1 6.2898 0.9390 -2.9605 12 1 6.5350 2.0699 -0.8295 13 7 1.6949 2.0825 1.2717 14 16 1.3113 3.6931 1.3109 15 8 0.9950 3.9974 2.6624 16 8 2.3277 4.3655 0.5802 17 6 -0.1789 3.8968 0.3931 18 16 -0.2888 4.4888 -1.2068 19 6 -1.9880 4.3195 -1.1889 20 7 -2.3849 3.8620 -0.0541 21 6 -1.4243 3.6169 0.8415 22 6 -1.6952 3.0915 2.1885 23 8 -0.7728 2.7778 2.9155 24 8 -2.9664 2.9578 2.6168 25 6 -3.1588 2.4335 3.9571 26 1 -0.3633 0.4760 -0.9109 27 1 -0.3634 -1.0267 0.0431 28 1 -0.3634 0.5507 0.8675 29 1 1.8934 -0.5140 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 3.7294 -0.0341 -3.0216 32 1 1.6910 1.5630 2.0908 33 1 -2.6394 4.5674 -2.0138 34 1 -2.7211 1.4376 4.0238 35 1 -2.6746 3.0923 4.6779 36 1 -4.2252 2.3775 4.1756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134705541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:26 Heat of formation + Delta-G solvation = -127.834957 kcal Electronic energy + Delta-G solvation = -25903.653815 eV Core-core repulsion = 22027.780191 eV Total energy + Delta-G solvation = -3875.873624 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00820 -40.38375 -38.34889 -37.82291 -37.44362 -36.88508 -34.14344 -32.35547 -32.29740 -29.32129 -28.52753 -27.10158 -24.90018 -24.30988 -22.18417 -21.89601 -20.92224 -19.99083 -18.74406 -18.62929 -18.17076 -17.93667 -17.62708 -17.12626 -16.99254 -16.41317 -15.84782 -15.75798 -15.33565 -14.88353 -14.80221 -14.65082 -14.23416 -13.64795 -13.45608 -13.37041 -13.20735 -13.08895 -13.03817 -12.97763 -12.76260 -12.74765 -12.60536 -12.08103 -11.89925 -11.74643 -11.70749 -11.63469 -11.55528 -11.32775 -11.07298 -10.45412 -10.33819 -10.06716 -8.08934 -6.21311 -1.34057 -0.62039 -0.11148 0.37680 0.50545 1.44219 1.46623 1.46890 1.56897 1.73249 2.10869 2.47300 2.66877 2.88464 3.17366 3.41563 3.80371 3.91959 4.29499 4.34441 4.39485 4.49881 4.51696 4.62410 4.70069 4.79640 5.05507 5.08420 5.25438 5.33643 5.67995 5.76783 5.94351 5.97784 6.26353 6.38329 6.49234 6.83905 7.46826 8.93623 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.015651 B = 0.005105 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.538250 B = 5483.864749 C = 5760.883014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.284 3.716 4 H 0.026 0.974 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.027 3.973 8 N -0.907 5.907 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.279 1.279 13 N -1.086 6.086 14 S 2.721 3.279 15 O -0.958 6.958 16 O -0.975 6.975 17 C -0.837 4.837 18 S 0.385 5.615 19 C 0.035 3.965 20 N -0.452 5.452 21 C 0.149 3.851 22 C 0.512 3.488 23 O -0.468 6.468 24 O -0.340 6.340 25 C 0.025 3.975 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.266 0.734 32 H 0.417 0.583 33 H 0.270 0.730 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 5.047 1.970 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.044 0.956 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.173 4.173 8 N -0.546 5.546 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.204 1.204 13 N -0.849 5.849 14 S 2.804 3.196 15 O -0.949 6.949 16 O -0.965 6.965 17 C -1.043 5.043 18 S 0.647 5.353 19 C -0.261 4.261 20 N -0.167 5.167 21 C 0.004 3.996 22 C 0.352 3.648 23 O -0.354 6.354 24 O -0.255 6.255 25 C -0.068 4.068 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.252 0.748 33 H 0.285 0.715 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.920 5.927 1.519 15.205 hybrid contribution 0.385 -0.925 0.872 1.328 sum -13.535 5.002 2.391 14.627 Atomic orbital electron populations 1.21709 0.96730 1.00989 1.00022 1.21720 0.93968 0.97986 1.02350 1.18384 0.93717 0.91319 0.78661 0.95590 1.21776 0.92972 1.38087 1.05260 0.93216 1.25463 1.01748 0.94726 0.95394 1.69906 1.35934 1.39198 1.09573 0.85754 0.81349 0.78322 0.77443 1.19863 1.20281 1.20445 1.55277 1.83326 1.28879 1.17394 1.01067 0.72313 0.73474 0.72755 1.93586 1.84550 1.83670 1.33046 1.93589 1.54297 1.73858 1.74733 1.36878 1.24275 1.24163 1.19002 1.83011 1.04570 1.48201 0.99547 1.29881 0.99653 0.97207 0.99384 1.67186 1.33471 1.14406 1.01606 1.18962 0.86588 1.00129 0.93968 1.20140 0.82645 0.76641 0.85414 1.91090 1.44846 1.44294 1.55168 1.86622 1.26356 1.76351 1.36220 1.23746 1.05472 0.99388 0.78191 0.94094 0.92297 0.94150 0.89647 0.93749 0.92441 0.74804 0.71479 0.91298 0.91554 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.84 71.98 0.71 -4.31 16 2 C -0.12 -5.27 5.37 30.59 0.16 -5.11 16 3 C 0.28 13.47 2.13 44.24 0.09 13.56 16 4 H 0.03 1.29 7.84 -2.38 -0.02 1.27 16 5 C -0.54 -29.16 8.84 25.60 0.23 -28.94 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 7 C 0.03 1.43 5.28 84.65 0.45 1.88 16 8 N -0.91 -48.22 11.28 21.45 0.24 -47.98 16 9 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 13 N -1.09 -46.39 4.93 -172.53 -0.85 -47.25 16 14 S 2.72 114.56 5.06 -56.49 -0.29 114.28 16 15 O -0.96 -42.42 14.50 -118.29 -1.71 -44.14 16 16 O -0.97 -46.12 17.55 -128.00 -2.25 -48.37 16 17 C -0.84 -29.30 6.28 67.14 0.42 -28.88 16 18 S 0.38 10.09 22.70 -56.49 -1.28 8.81 16 19 C 0.04 0.69 12.17 130.71 1.59 2.28 16 20 N -0.45 -12.38 10.60 -193.10 -2.05 -14.43 16 21 C 0.15 4.92 6.70 40.52 0.27 5.19 16 22 C 0.51 17.49 7.84 70.15 0.55 18.04 16 23 O -0.47 -17.85 12.31 27.60 0.34 -17.51 16 24 O -0.34 -9.63 10.51 -57.16 -0.60 -10.23 16 25 C 0.02 0.49 10.57 113.37 1.20 1.68 16 26 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.42 7.76 -2.39 -0.02 1.40 16 29 H 0.09 4.17 5.90 -2.39 -0.01 4.16 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 32 H 0.42 16.48 8.83 -96.75 -0.85 15.63 16 33 H 0.27 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -71.74 338.68 -0.47 -72.21 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.28 Total: 14.24 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 5.67 Total: -24.59 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -2.66 Total: -109.66 kcal Atomic # 8 Polarization: -116.02 SS G_CDS: -4.22 Total: -120.25 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 124.66 SS G_CDS: -1.57 Total: 123.09 kcal Total: -71.74 -0.47 -72.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134705541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.628 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds