Wall clock time and date at job start Tue Mar 31 2020 17:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47096 * 240.00038 * 3 2 1 5 5 H 1.48499 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46708 * 120.00352 * 3 2 1 7 7 C 1.40046 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.46380 * 120.00035 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99987 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00179 * 180.02562 * 9 7 2 12 12 N 1.40098 * 120.00119 * 180.02562 * 11 9 7 13 13 C 1.34773 * 120.00119 * 179.97438 * 12 11 9 14 14 O 1.21731 * 120.00002 * 0.02562 * 13 12 11 15 15 C 1.46456 * 120.00355 * 179.97438 * 13 12 11 16 16 C 1.36654 * 125.18057 * 179.97438 * 15 13 12 17 17 C 1.36811 * 114.72735 * 180.02562 * 16 15 13 18 18 C 1.36474 * 114.77682 * 0.02562 * 17 16 15 19 19 C 1.47756 * 125.15268 * 180.02562 * 18 17 16 20 20 C 1.39617 * 120.11844 * 179.97438 * 19 18 17 21 21 C 1.37905 * 119.87534 * 180.02562 * 20 19 18 22 22 C 1.38592 * 120.11930 * 359.97438 * 21 20 19 23 23 F 1.35103 * 119.87842 * 179.97438 * 22 21 20 24 24 C 1.38603 * 120.24957 * 0.02562 * 22 21 20 25 25 C 1.37896 * 120.11742 * 359.97438 * 24 22 21 26 26 S 1.75837 * 109.69518 * 0.25790 * 18 17 16 27 27 H 0.96995 * 120.00087 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00019 * 0.02562 * 11 9 7 29 29 H 0.97001 * 119.99861 * 0.02562 * 12 11 9 30 30 H 1.08004 * 122.63775 * 0.02744 * 16 15 13 31 31 H 1.08001 * 122.61326 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.06748 * 0.03787 * 20 19 18 33 33 H 1.07999 * 119.93739 * 179.72234 * 21 20 19 34 34 H 1.07995 * 119.94484 * 179.97438 * 24 22 21 35 35 H 1.08001 * 120.06070 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4806 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 7 1.2485 -4.8610 -0.0011 13 6 1.9224 -6.0282 -0.0016 14 8 3.1397 -6.0282 -0.0011 15 6 1.1902 -7.2966 -0.0016 16 6 1.7639 -8.5368 -0.0026 17 6 0.8763 -9.5779 -0.0029 18 6 -0.4377 -9.2093 -0.0028 19 6 -1.5832 -10.1426 -0.0025 20 6 -2.8892 -9.6489 -0.0018 21 6 -3.9545 -10.5246 -0.0011 22 6 -3.7306 -11.8923 -0.0015 23 9 -4.7779 -12.7457 -0.0002 24 6 -2.4362 -12.3879 -0.0022 25 6 -1.3635 -11.5214 -0.0030 26 16 -0.5611 -7.4552 -0.0096 27 1 -0.4850 0.8400 -0.0004 28 1 2.9190 -3.6477 -0.0002 29 1 0.2785 -4.8610 -0.0018 30 1 2.8339 -8.6837 -0.0031 31 1 1.1909 -10.6111 -0.0033 32 1 -3.0648 -8.5833 -0.0021 33 1 -4.9652 -10.1438 0.0040 34 1 -2.2674 -13.4546 -0.0021 35 1 -0.3553 -11.9086 -0.0039 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153488381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:17 Heat of formation + Delta-G solvation = -30.585979 kcal Electronic energy + Delta-G solvation = -23623.354005 eV Core-core repulsion = 19628.626251 eV Total energy + Delta-G solvation = -3994.727754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.27988 -39.69256 -39.41740 -37.61318 -36.86580 -34.22447 -32.61497 -32.32157 -31.67469 -30.53063 -28.24516 -26.29490 -25.05194 -23.63140 -22.39359 -21.56803 -20.63814 -19.18046 -18.84945 -18.01528 -17.09976 -16.83952 -16.38606 -15.97599 -15.92681 -15.71468 -15.32369 -14.92326 -14.84886 -14.17287 -14.07217 -13.85521 -13.71158 -13.61984 -13.26012 -12.81981 -12.61841 -12.48896 -12.37089 -12.32249 -11.56801 -11.44555 -11.14747 -10.99033 -10.69161 -10.44829 -10.23094 -9.93132 -9.82868 -9.61519 -8.99913 -8.80897 -8.23301 -8.02760 -7.24034 -6.41772 -4.87184 -0.17556 0.77586 1.01647 1.19529 1.62314 2.27789 2.73514 3.08022 3.13507 3.17395 3.23275 3.34768 3.80989 4.01922 4.13274 4.27080 4.36932 4.40399 4.66648 4.74396 4.82374 5.06605 5.22403 5.39375 5.43307 5.48639 5.55544 5.65655 5.68860 5.75431 5.92434 5.99072 6.17457 6.38671 7.18030 7.25295 7.68165 7.82901 8.10558 8.65660 8.80143 9.14340 10.31312 10.50661 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.002151 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.319334 B =13015.485307 C =14194.956809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.087 3.913 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.553 3.447 10 O -0.580 6.580 11 N -0.557 5.557 12 N -0.502 5.502 13 C 0.570 3.430 14 O -0.547 6.547 15 C -0.230 4.230 16 C -0.061 4.061 17 C -0.130 4.130 18 C -0.143 4.143 19 C -0.023 4.023 20 C -0.082 4.082 21 C -0.144 4.144 22 C 0.099 3.901 23 F -0.139 7.139 24 C -0.148 4.148 25 C -0.072 4.072 26 S 0.185 5.815 27 H 0.273 0.727 28 H 0.415 0.585 29 H 0.422 0.578 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 -22.476 -0.017 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.359 3.641 10 O -0.461 6.461 11 N -0.311 5.311 12 N -0.243 5.243 13 C 0.354 3.646 14 O -0.426 6.426 15 C -0.352 4.352 16 C -0.094 4.094 17 C -0.161 4.161 18 C -0.262 4.262 19 C -0.025 4.025 20 C -0.101 4.101 21 C -0.163 4.163 22 C 0.079 3.921 23 F -0.117 7.117 24 C -0.167 4.167 25 C -0.092 4.092 26 S 0.455 5.545 27 H 0.084 0.916 28 H 0.255 0.745 29 H 0.262 0.738 30 H 0.173 0.827 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.137 -21.216 -0.025 22.086 hybrid contribution 1.328 -0.411 0.007 1.390 sum -4.808 -21.627 -0.018 22.155 Atomic orbital electron populations 1.69992 1.07156 1.28031 1.33833 1.25728 0.94794 1.00484 0.92418 0.86238 0.79680 0.80048 0.79748 1.19002 1.20385 1.19007 1.20642 0.93970 0.87724 1.54422 0.90547 1.18691 0.87683 0.80695 0.77041 1.90617 1.13745 1.85740 1.55979 1.45970 1.07760 0.93986 1.83426 1.44507 1.08923 0.98917 1.71939 1.16781 0.87115 0.81285 0.79397 1.90812 1.12270 1.86590 1.52975 1.24442 0.96700 0.97634 1.16470 1.20441 1.01929 0.89268 0.97760 1.20389 0.90493 1.00752 1.04462 1.23569 0.96206 0.96502 1.09964 1.18086 0.90823 0.92059 1.01559 1.21151 0.90866 1.00194 0.97923 1.21070 1.00784 0.91264 1.03198 1.17840 0.84026 0.87545 1.02680 1.91515 1.56336 1.70091 1.93777 1.21080 0.90736 1.01247 1.03636 1.21061 0.99303 0.91272 0.97542 1.84308 1.02337 0.99298 1.68525 0.91597 0.74503 0.73788 0.82675 0.83309 0.84660 0.84119 0.84226 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.73 11.83 55.55 0.66 -21.07 16 2 C 0.09 2.32 5.50 -17.37 -0.10 2.22 16 3 Si 0.92 19.29 29.56 -169.99 -5.02 14.26 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.53 -14.36 9.54 -35.63 -0.34 -14.70 16 8 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 9 C 0.55 15.28 7.86 -12.99 -0.10 15.18 16 10 O -0.58 -17.73 14.86 5.20 0.08 -17.65 16 11 N -0.56 -13.06 6.26 30.19 0.19 -12.87 16 12 N -0.50 -10.34 6.25 30.21 0.19 -10.15 16 13 C 0.57 10.63 7.89 -12.95 -0.10 10.53 16 14 O -0.55 -11.44 16.65 5.16 0.09 -11.35 16 15 C -0.23 -3.36 6.43 -36.85 -0.24 -3.60 16 16 C -0.06 -0.74 9.88 -40.67 -0.40 -1.14 16 17 C -0.13 -1.25 9.66 -40.73 -0.39 -1.64 16 18 C -0.14 -1.47 6.41 -36.33 -0.23 -1.70 16 19 C -0.02 -0.21 5.87 -104.98 -0.62 -0.82 16 20 C -0.08 -0.71 9.59 -39.19 -0.38 -1.08 16 21 C -0.14 -1.15 10.01 -39.57 -0.40 -1.55 16 22 C 0.10 0.82 7.30 -39.32 -0.29 0.54 16 23 F -0.14 -1.26 17.26 2.25 0.04 -1.23 16 24 C -0.15 -1.05 10.01 -39.57 -0.40 -1.44 16 25 C -0.07 -0.52 9.54 -39.19 -0.37 -0.89 16 26 S 0.19 2.24 21.24 -107.50 -2.28 -0.05 16 27 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 28 H 0.42 9.14 7.98 -182.60 -1.46 7.69 16 29 H 0.42 8.42 7.08 -182.60 -1.29 7.12 16 30 H 0.16 1.75 8.03 -52.48 -0.42 1.32 16 31 H 0.15 0.95 6.91 -52.49 -0.36 0.59 16 32 H 0.14 1.07 7.27 -52.49 -0.38 0.69 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.14 0.69 6.76 -52.49 -0.35 0.33 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -33.83 337.02 -10.01 -43.83 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.66 Total: 11.30 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -4.35 Total: -0.10 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 1.03 Total: -44.10 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: 0.16 Total: -29.00 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.28 Total: -0.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.83 -10.01 -43.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153488381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.245 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds