Wall clock time and date at job start Tue Mar 31 2020 17:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47096 * 240.00038 * 3 2 1 5 5 H 1.48499 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46708 * 120.00352 * 3 2 1 7 7 C 1.40046 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.46380 * 120.00035 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99987 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00179 * 180.02562 * 9 7 2 12 12 N 1.40098 * 120.00119 * 180.02562 * 11 9 7 13 13 C 1.34773 * 120.00119 * 179.97438 * 12 11 9 14 14 O 1.21731 * 120.00002 * 0.02562 * 13 12 11 15 15 C 1.46456 * 120.00355 * 179.97438 * 13 12 11 16 16 C 1.36654 * 125.18057 * 179.97438 * 15 13 12 17 17 C 1.36811 * 114.72735 * 180.02562 * 16 15 13 18 18 C 1.36474 * 114.77682 * 0.02562 * 17 16 15 19 19 C 1.47756 * 125.15268 * 180.02562 * 18 17 16 20 20 C 1.39617 * 120.11844 * 179.97438 * 19 18 17 21 21 C 1.37905 * 119.87534 * 180.02562 * 20 19 18 22 22 C 1.38592 * 120.11930 * 359.97438 * 21 20 19 23 23 F 1.35103 * 119.87842 * 179.97438 * 22 21 20 24 24 C 1.38603 * 120.24957 * 0.02562 * 22 21 20 25 25 C 1.37896 * 120.11742 * 359.97438 * 24 22 21 26 26 S 1.75837 * 109.69518 * 0.25790 * 18 17 16 27 27 H 0.96995 * 120.00087 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00019 * 0.02562 * 11 9 7 29 29 H 0.97001 * 119.99861 * 0.02562 * 12 11 9 30 30 H 1.08004 * 122.63775 * 0.02744 * 16 15 13 31 31 H 1.08001 * 122.61326 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.06748 * 0.03787 * 20 19 18 33 33 H 1.07999 * 119.93739 * 179.72234 * 21 20 19 34 34 H 1.07995 * 119.94484 * 179.97438 * 24 22 21 35 35 H 1.08001 * 120.06070 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4806 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 7 1.2485 -4.8610 -0.0011 13 6 1.9224 -6.0282 -0.0016 14 8 3.1397 -6.0282 -0.0011 15 6 1.1902 -7.2966 -0.0016 16 6 1.7639 -8.5368 -0.0026 17 6 0.8763 -9.5779 -0.0029 18 6 -0.4377 -9.2093 -0.0028 19 6 -1.5832 -10.1426 -0.0025 20 6 -2.8892 -9.6489 -0.0018 21 6 -3.9545 -10.5246 -0.0011 22 6 -3.7306 -11.8923 -0.0015 23 9 -4.7779 -12.7457 -0.0002 24 6 -2.4362 -12.3879 -0.0022 25 6 -1.3635 -11.5214 -0.0030 26 16 -0.5611 -7.4552 -0.0096 27 1 -0.4850 0.8400 -0.0004 28 1 2.9190 -3.6477 -0.0002 29 1 0.2785 -4.8610 -0.0018 30 1 2.8339 -8.6837 -0.0031 31 1 1.1909 -10.6111 -0.0033 32 1 -3.0648 -8.5833 -0.0021 33 1 -4.9652 -10.1438 0.0040 34 1 -2.2674 -13.4546 -0.0021 35 1 -0.3553 -11.9086 -0.0039 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153488381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:16 Heat of formation + Delta-G solvation = -52.832928 kcal Electronic energy + Delta-G solvation = -23624.318705 eV Core-core repulsion = 19628.626251 eV Total energy + Delta-G solvation = -3995.692454 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.94670 -41.08693 -40.24223 -39.28163 -38.09194 -36.03374 -34.66954 -33.24641 -32.26196 -32.14460 -29.37900 -28.12753 -26.03505 -24.30798 -23.19535 -22.85806 -22.49639 -20.48686 -19.90225 -18.85368 -18.55704 -18.37951 -17.63114 -17.23681 -16.76058 -16.63668 -16.61466 -16.43907 -15.92585 -15.59173 -15.20764 -14.89798 -14.67260 -14.59862 -14.43357 -14.35088 -14.03576 -13.38140 -13.25519 -13.17167 -13.12450 -12.81381 -12.76849 -12.27313 -12.08464 -12.06413 -11.78574 -11.46557 -10.96886 -10.65972 -10.19417 -10.19059 -9.73626 -9.22056 -8.93313 -8.42347 -6.98911 -1.05075 0.20058 0.21913 0.24487 0.70123 1.11979 1.33613 1.44019 1.44669 1.58477 1.99778 2.25914 2.36420 2.61676 3.19156 3.27986 3.39537 3.46523 3.70661 3.84520 3.85179 4.13305 4.19080 4.25277 4.46354 4.72804 4.86731 4.92609 5.00808 5.07611 5.16465 5.23873 5.25743 5.38813 5.42479 5.78670 5.89274 5.99767 6.22184 6.73246 7.01361 7.18705 8.25403 8.52411 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.002151 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.319334 B =13015.485307 C =14194.956809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.032 3.968 3 Si 1.006 2.994 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.557 4.557 8 H 0.095 0.905 9 C 0.540 3.460 10 O -0.620 6.620 11 N -0.556 5.556 12 N -0.512 5.512 13 C 0.577 3.423 14 O -0.575 6.575 15 C -0.279 4.279 16 C -0.036 4.036 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.044 4.044 20 C -0.090 4.090 21 C -0.151 4.151 22 C 0.090 3.910 23 F -0.145 7.145 24 C -0.145 4.145 25 C -0.060 4.060 26 S 0.169 5.831 27 H 0.280 0.720 28 H 0.421 0.579 29 H 0.422 0.578 30 H 0.163 0.837 31 H 0.192 0.808 32 H 0.134 0.866 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -24.499 -0.018 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.184 4.184 3 Si 0.824 3.176 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.113 0.887 9 C 0.346 3.654 10 O -0.506 6.506 11 N -0.308 5.308 12 N -0.254 5.254 13 C 0.365 3.635 14 O -0.457 6.457 15 C -0.400 4.400 16 C -0.070 4.070 17 C -0.160 4.160 18 C -0.236 4.236 19 C -0.046 4.046 20 C -0.109 4.109 21 C -0.170 4.170 22 C 0.070 3.930 23 F -0.123 7.123 24 C -0.164 4.164 25 C -0.080 4.080 26 S 0.440 5.560 27 H 0.090 0.910 28 H 0.261 0.739 29 H 0.262 0.738 30 H 0.181 0.819 31 H 0.209 0.791 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.247 -23.285 -0.026 23.869 hybrid contribution 0.946 -0.083 0.007 0.949 sum -4.301 -23.368 -0.019 23.760 Atomic orbital electron populations 1.70132 1.09438 1.29702 1.34737 1.26992 0.95685 1.04784 0.90976 0.84939 0.78136 0.74051 0.80434 1.17750 1.19550 1.17761 1.21201 0.95125 0.88342 1.54812 0.88701 1.18988 0.87382 0.82097 0.76914 1.90568 1.15329 1.86710 1.57962 1.45500 1.07900 0.94843 1.82551 1.44675 1.08901 0.98300 1.73562 1.17348 0.86995 0.81751 0.77419 1.90773 1.13549 1.87205 1.54136 1.24044 0.97883 0.96305 1.21816 1.20748 1.02796 0.88799 0.94698 1.20705 0.89383 1.02019 1.03870 1.23836 0.97212 0.95166 1.07352 1.18187 0.90243 0.92784 1.03369 1.21244 0.91238 1.00399 0.98046 1.21207 1.01273 0.91359 1.03153 1.18109 0.84562 0.87591 1.02724 1.91503 1.56789 1.70226 1.93832 1.21378 0.89930 1.02614 1.02455 1.21380 1.00822 0.90141 0.95662 1.84384 1.00867 1.01653 1.69137 0.90950 0.73854 0.73767 0.81909 0.79075 0.84806 0.83079 0.81749 0.81315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.52 11.83 21.84 0.26 -47.26 16 2 C 0.03 1.74 5.50 85.30 0.47 2.21 16 3 Si 1.01 39.36 29.56 68.60 2.03 41.38 16 4 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 7 C -0.56 -30.86 9.54 24.83 0.24 -30.62 16 8 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 9 C 0.54 31.08 7.86 86.36 0.68 31.76 16 10 O -0.62 -39.85 14.86 -4.31 -0.06 -39.92 16 11 N -0.56 -27.19 6.26 -176.62 -1.10 -28.30 16 12 N -0.51 -22.14 6.25 -176.53 -1.10 -23.24 16 13 C 0.58 22.24 7.89 86.38 0.68 22.93 16 14 O -0.57 -24.63 16.65 -4.45 -0.07 -24.71 16 15 C -0.28 -8.17 6.43 24.04 0.15 -8.01 16 16 C -0.04 -0.81 9.88 21.56 0.21 -0.60 16 17 C -0.13 -2.06 9.66 21.52 0.21 -1.86 16 18 C -0.12 -2.12 6.41 24.38 0.16 -1.96 16 19 C -0.04 -0.67 5.87 -20.10 -0.12 -0.79 16 20 C -0.09 -1.44 9.59 22.52 0.22 -1.22 16 21 C -0.15 -2.20 10.01 22.28 0.22 -1.98 16 22 C 0.09 1.30 7.30 22.44 0.16 1.47 16 23 F -0.14 -2.39 17.26 44.97 0.78 -1.61 16 24 C -0.15 -1.54 10.01 22.28 0.22 -1.32 16 25 C -0.06 -0.62 9.54 22.52 0.21 -0.41 16 26 S 0.17 4.11 21.24 -56.49 -1.20 2.91 16 27 H 0.28 14.79 8.29 -92.71 -0.77 14.02 16 28 H 0.42 19.27 7.98 -213.32 -1.70 17.56 16 29 H 0.42 17.94 7.08 -213.32 -1.51 16.43 16 30 H 0.16 3.35 8.03 -2.91 -0.02 3.32 16 31 H 0.19 1.38 6.91 -2.91 -0.02 1.36 16 32 H 0.13 2.09 7.27 -2.91 -0.02 2.07 16 33 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.17 0.70 6.76 -2.91 -0.02 0.68 16 Total: -1.00 -76.39 337.02 1.22 -75.16 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -2.01 Total: 35.99 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 3.72 Total: 9.59 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -1.95 Total: -98.81 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: -0.14 Total: -64.62 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.20 Total: 2.91 kcal Total: -76.39 1.22 -75.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153488381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.330 kcal (2) G-P(sol) polarization free energy of solvation -76.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds