Wall clock time and date at job start Tue Mar 31 2020 18:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39791 * 120.06814 * 283.02123 * 3 2 1 5 5 C 1.38081 * 120.19284 * 180.25922 * 4 3 2 6 6 C 1.38040 * 120.33213 * 359.76594 * 5 4 3 7 7 C 1.39910 * 120.13174 * 359.97438 * 6 5 4 8 8 C 1.47235 * 120.09308 * 179.97438 * 7 6 5 9 9 C 1.34797 * 120.00188 * 0.02562 * 8 7 6 10 10 C 1.46430 * 119.99748 * 179.97438 * 9 8 7 11 11 O 1.21702 * 119.99898 * 359.97438 * 10 9 8 12 12 N 1.34769 * 120.00034 * 180.02562 * 10 9 8 13 13 S 1.65602 * 120.00535 * 180.02562 * 12 10 9 14 14 O 1.42092 * 104.28200 * 181.06729 * 13 12 10 15 15 O 1.42105 * 104.27188 * 308.92710 * 13 12 10 16 16 C 1.81403 * 104.44955 * 64.99300 * 13 12 10 17 17 C 1.52996 * 109.47097 * 180.02562 * 16 13 12 18 18 C 1.50704 * 109.47229 * 180.02562 * 17 16 13 19 19 H 1.07997 * 119.99478 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99961 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47663 * 89.99430 * 22 20 18 24 24 H 1.48500 * 109.47272 * 210.00040 * 22 20 18 25 25 H 1.48508 * 109.47007 * 329.99671 * 22 20 18 26 26 C 1.39296 * 120.06769 * 102.76418 * 3 2 1 27 27 H 1.07994 * 119.90172 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.83757 * 179.74332 * 5 4 3 29 29 H 1.07998 * 119.93295 * 179.97438 * 6 5 4 30 30 H 1.08000 * 119.99341 * 180.02562 * 8 7 6 31 31 H 1.08000 * 119.99941 * 359.97438 * 9 8 7 32 32 H 0.97008 * 120.00278 * 359.97438 * 12 10 9 33 33 H 1.09002 * 109.46963 * 300.00391 * 16 13 12 34 34 H 1.08995 * 109.46833 * 60.00493 * 16 13 12 35 35 H 1.09002 * 109.46941 * 299.99679 * 17 16 13 36 36 H 1.09004 * 109.47743 * 59.99579 * 17 16 13 37 37 H 0.96999 * 120.00069 * 180.02562 * 21 20 18 38 38 H 1.08002 * 120.16731 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 -0.2716 1.1787 5 6 4.6493 -0.2664 1.1828 6 6 5.3489 0.0025 0.0236 7 6 4.6617 0.2715 -1.1650 8 6 5.4088 0.5589 -2.4008 9 6 6.7567 0.5625 -2.3882 10 6 7.4995 0.8477 -3.6174 11 8 6.9000 1.0810 -4.6505 12 7 8.8472 0.8509 -3.6049 13 16 9.6874 1.1741 -4.9949 14 8 11.0518 1.0660 -4.6129 15 8 9.1242 0.2935 -5.9575 16 6 9.2703 2.8956 -5.3861 17 6 9.9938 3.3173 -6.6665 18 6 9.6478 4.7477 -6.9912 19 1 8.9784 5.3005 -6.3487 20 6 10.1857 5.3506 -8.1083 21 7 11.0013 4.6776 -8.8904 22 14 9.7574 7.1238 -8.5104 23 1 10.7351 8.0299 -7.8560 24 1 9.8050 7.3233 -9.9812 25 1 8.3913 7.4279 -8.0136 26 6 3.2658 0.2673 -1.1757 27 1 2.7281 -0.4821 2.0897 28 1 5.1846 -0.4735 2.0976 29 1 6.4288 0.0053 0.0343 30 1 4.8767 0.7667 -3.3174 31 1 7.2887 0.3551 -1.4715 32 1 9.3251 0.6646 -2.7816 33 1 8.1937 2.9846 -5.5313 34 1 9.5805 3.5404 -4.5639 35 1 11.0705 3.2283 -6.5215 36 1 9.6834 2.6724 -7.4886 37 1 11.3800 5.1019 -9.6761 38 1 2.7295 0.4746 -2.0900 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181291993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:02 Heat of formation + Delta-G solvation = -43.975918 kcal Electronic energy + Delta-G solvation = -24109.556331 eV Core-core repulsion = 20237.708251 eV Total energy + Delta-G solvation = -3871.848080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.37785 -39.83909 -37.03774 -36.71638 -35.63209 -34.64485 -34.46984 -33.89856 -31.99451 -31.19028 -30.43602 -25.68021 -25.36203 -24.42254 -22.54751 -21.66857 -20.80676 -19.45305 -18.47589 -18.22238 -17.55406 -16.91041 -16.53290 -16.03306 -15.80058 -15.37106 -14.99246 -14.86480 -14.64123 -14.59555 -14.51471 -14.20113 -13.72676 -13.44740 -13.30400 -13.12218 -12.73727 -12.55583 -12.41007 -12.05462 -11.81516 -11.74089 -11.72412 -11.62632 -11.08817 -11.01282 -10.98477 -10.83768 -10.49468 -10.38636 -10.31957 -9.71990 -9.64748 -9.18925 -8.94044 -8.50125 -6.12417 -4.17820 -0.16558 0.28764 0.49282 1.29115 2.15347 2.38930 2.68323 2.84925 3.26758 3.27146 3.33094 3.33660 3.36289 3.85291 4.06879 4.14277 4.28581 4.37236 4.40563 4.49330 4.63464 4.67010 4.74726 4.91178 5.06975 5.21492 5.22923 5.39015 5.53745 5.58803 5.64879 5.70753 5.76203 5.99201 6.08839 6.45514 6.63979 6.96367 7.28120 7.34772 7.42282 7.80618 8.16456 8.85121 9.46709 10.98626 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002209 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.060693 B =12673.815530 C =13916.921872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.252 3.748 3 C -0.029 4.029 4 C -0.061 4.061 5 C -0.120 4.120 6 C -0.072 4.072 7 C -0.073 4.073 8 C -0.016 4.016 9 C -0.206 4.206 10 C 0.566 3.434 11 O -0.492 6.492 12 N -1.055 6.055 13 S 2.567 3.433 14 O -0.954 6.954 15 O -0.938 6.938 16 C -0.575 4.575 17 C 0.029 3.971 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.045 4.045 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.429 0.571 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.777 -10.564 23.607 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.063 4.063 3 C -0.033 4.033 4 C -0.081 4.081 5 C -0.138 4.138 6 C -0.090 4.090 7 C -0.073 4.073 8 C -0.036 4.036 9 C -0.228 4.228 10 C 0.355 3.645 11 O -0.366 6.366 12 N -0.815 5.815 13 S 2.667 3.333 14 O -0.945 6.945 15 O -0.928 6.928 16 C -0.710 4.710 17 C -0.010 4.010 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.065 4.065 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.264 0.736 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.329 -11.069 22.261 27.750 hybrid contribution 0.283 1.366 0.428 1.459 sum -12.046 -9.702 22.689 27.460 Atomic orbital electron populations 1.81296 1.12024 1.08367 1.06942 1.25648 0.92593 0.93973 0.94122 1.15886 0.84451 1.07458 0.95470 1.21357 0.94537 0.95565 0.96668 1.21075 0.93476 1.00371 0.98831 1.21745 1.00918 0.94747 0.91633 1.18892 0.92632 1.02172 0.93630 1.22462 0.93983 0.90494 0.96615 1.22972 0.95204 1.06856 0.97784 1.18203 0.81421 0.75222 0.89692 1.91037 1.67924 1.44972 1.32649 1.55309 1.16253 1.77654 1.32294 1.06665 0.73702 0.79884 0.73000 1.93590 1.31861 1.87617 1.81422 1.93600 1.78185 1.62554 1.58429 1.30334 1.12168 1.17528 1.10936 1.18994 0.95314 0.98979 0.87724 1.20973 1.28997 0.95989 1.09866 0.91973 1.25068 0.94915 0.98553 0.95992 1.69952 1.30817 1.36987 1.15053 0.86445 0.78863 0.84195 0.77636 1.20480 1.20998 1.19735 1.21463 0.93145 0.94694 0.97217 0.84691 0.84317 0.84370 0.83679 0.84357 0.73635 0.85055 0.86043 0.94752 0.94555 0.92514 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.26 18.54 41.83 0.78 -3.49 16 2 C 0.25 1.92 15.32 -22.47 -0.34 1.58 16 3 C -0.03 -0.15 5.72 -107.00 -0.61 -0.77 16 4 C -0.06 -0.21 9.75 -39.06 -0.38 -0.59 16 5 C -0.12 -0.32 10.01 -39.71 -0.40 -0.72 16 6 C -0.07 -0.25 9.41 -39.03 -0.37 -0.62 16 7 C -0.07 -0.38 5.86 -105.11 -0.62 -0.99 16 8 C -0.02 -0.11 9.46 -37.15 -0.35 -0.46 16 9 C -0.21 -1.50 9.41 -37.51 -0.35 -1.85 16 10 C 0.57 6.80 7.48 -12.97 -0.10 6.71 16 11 O -0.49 -8.01 14.33 -11.96 -0.17 -8.18 16 12 N -1.05 -12.15 5.60 30.20 0.17 -11.98 16 13 S 2.57 44.64 5.11 -107.50 -0.55 44.09 16 14 O -0.95 -18.16 18.08 -57.54 -1.04 -19.20 16 15 O -0.94 -19.97 17.03 -64.79 -1.10 -21.07 16 16 C -0.57 -11.06 5.82 37.16 0.22 -10.85 16 17 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 18 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 22 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.04 -0.23 9.50 -38.68 -0.37 -0.60 16 27 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 28 H 0.14 0.06 8.06 -52.49 -0.42 -0.36 16 29 H 0.14 0.21 6.15 -52.49 -0.32 -0.11 16 30 H 0.15 1.09 7.52 -52.49 -0.39 0.70 16 31 H 0.14 0.47 6.06 -52.49 -0.32 0.15 16 32 H 0.43 3.00 8.77 -34.47 -0.30 2.69 16 33 H 0.13 2.48 7.19 -51.92 -0.37 2.11 16 34 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -38.86 360.46 -8.78 -47.64 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -3.79 Total: -2.09 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -4.22 Total: -21.70 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 1.68 Total: -41.14 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -2.32 Total: -48.45 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 44.64 SS G_CDS: -0.55 Total: 44.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.86 -8.78 -47.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181291993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.665 kcal (2) G-P(sol) polarization free energy of solvation -38.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds