Wall clock time and date at job start Tue Mar 31 2020 18:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39791 * 120.06814 * 283.02123 * 3 2 1 5 5 C 1.38081 * 120.19284 * 180.25922 * 4 3 2 6 6 C 1.38040 * 120.33213 * 359.76594 * 5 4 3 7 7 C 1.39910 * 120.13174 * 359.97438 * 6 5 4 8 8 C 1.47235 * 120.09308 * 179.97438 * 7 6 5 9 9 C 1.34797 * 120.00188 * 0.02562 * 8 7 6 10 10 C 1.46430 * 119.99748 * 179.97438 * 9 8 7 11 11 O 1.21702 * 119.99898 * 359.97438 * 10 9 8 12 12 N 1.34769 * 120.00034 * 180.02562 * 10 9 8 13 13 S 1.65602 * 120.00535 * 180.02562 * 12 10 9 14 14 O 1.42092 * 104.28200 * 181.06729 * 13 12 10 15 15 O 1.42105 * 104.27188 * 308.92710 * 13 12 10 16 16 C 1.81403 * 104.44955 * 64.99300 * 13 12 10 17 17 C 1.52996 * 109.47097 * 180.02562 * 16 13 12 18 18 C 1.50704 * 109.47229 * 180.02562 * 17 16 13 19 19 H 1.07997 * 119.99478 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99961 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47663 * 89.99430 * 22 20 18 24 24 H 1.48500 * 109.47272 * 210.00040 * 22 20 18 25 25 H 1.48508 * 109.47007 * 329.99671 * 22 20 18 26 26 C 1.39296 * 120.06769 * 102.76418 * 3 2 1 27 27 H 1.07994 * 119.90172 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.83757 * 179.74332 * 5 4 3 29 29 H 1.07998 * 119.93295 * 179.97438 * 6 5 4 30 30 H 1.08000 * 119.99341 * 180.02562 * 8 7 6 31 31 H 1.08000 * 119.99941 * 359.97438 * 9 8 7 32 32 H 0.97008 * 120.00278 * 359.97438 * 12 10 9 33 33 H 1.09002 * 109.46963 * 300.00391 * 16 13 12 34 34 H 1.08995 * 109.46833 * 60.00493 * 16 13 12 35 35 H 1.09002 * 109.46941 * 299.99679 * 17 16 13 36 36 H 1.09004 * 109.47743 * 59.99579 * 17 16 13 37 37 H 0.96999 * 120.00069 * 180.02562 * 21 20 18 38 38 H 1.08002 * 120.16731 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 -0.2716 1.1787 5 6 4.6493 -0.2664 1.1828 6 6 5.3489 0.0025 0.0236 7 6 4.6617 0.2715 -1.1650 8 6 5.4088 0.5589 -2.4008 9 6 6.7567 0.5625 -2.3882 10 6 7.4995 0.8477 -3.6174 11 8 6.9000 1.0810 -4.6505 12 7 8.8472 0.8509 -3.6049 13 16 9.6874 1.1741 -4.9949 14 8 11.0518 1.0660 -4.6129 15 8 9.1242 0.2935 -5.9575 16 6 9.2703 2.8956 -5.3861 17 6 9.9938 3.3173 -6.6665 18 6 9.6478 4.7477 -6.9912 19 1 8.9784 5.3005 -6.3487 20 6 10.1857 5.3506 -8.1083 21 7 11.0013 4.6776 -8.8904 22 14 9.7574 7.1238 -8.5104 23 1 10.7351 8.0299 -7.8560 24 1 9.8050 7.3233 -9.9812 25 1 8.3913 7.4279 -8.0136 26 6 3.2658 0.2673 -1.1757 27 1 2.7281 -0.4821 2.0897 28 1 5.1846 -0.4735 2.0976 29 1 6.4288 0.0053 0.0343 30 1 4.8767 0.7667 -3.3174 31 1 7.2887 0.3551 -1.4715 32 1 9.3251 0.6646 -2.7816 33 1 8.1937 2.9846 -5.5313 34 1 9.5805 3.5404 -4.5639 35 1 11.0705 3.2283 -6.5215 36 1 9.6834 2.6724 -7.4886 37 1 11.3800 5.1019 -9.6761 38 1 2.7295 0.4746 -2.0900 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181291993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:02 Heat of formation + Delta-G solvation = -72.136133 kcal Electronic energy + Delta-G solvation = -24110.777449 eV Core-core repulsion = 20237.708251 eV Total energy + Delta-G solvation = -3873.069199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20308 -40.36447 -38.25158 -37.65258 -37.18337 -35.93736 -35.53748 -35.15412 -33.15629 -32.31039 -30.90801 -27.63508 -25.97492 -24.91455 -23.63415 -22.99674 -21.50631 -20.68765 -19.40145 -18.95872 -18.86684 -18.23887 -17.28869 -17.22216 -16.78582 -16.54318 -16.45130 -16.07929 -15.71677 -15.29332 -15.16958 -15.13668 -14.58619 -14.48041 -14.20477 -13.89234 -13.79228 -13.68818 -13.57437 -13.32798 -13.25934 -13.20227 -12.93766 -12.82729 -12.39838 -12.28611 -12.23007 -12.07857 -11.99065 -11.72482 -11.43303 -11.39460 -11.04147 -10.64482 -9.96263 -9.35610 -8.26422 -6.40153 -0.95351 -0.60455 -0.09783 0.78000 1.40663 1.42926 1.47068 1.54057 1.58011 1.81553 2.13302 2.37760 2.63247 2.79417 2.95583 3.06798 3.09379 3.31641 3.77783 3.87998 3.98765 4.03462 4.08770 4.15745 4.18218 4.35879 4.41503 4.71889 4.73420 4.95645 5.00486 5.16532 5.24968 5.26837 5.32283 5.40067 5.57258 5.67608 5.82282 5.85887 6.05270 6.40901 6.52789 6.72523 7.29554 8.85833 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002209 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.060693 B =12673.815530 C =13916.921872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.277 3.723 3 C -0.048 4.048 4 C -0.050 4.050 5 C -0.115 4.115 6 C -0.060 4.060 7 C -0.088 4.088 8 C -0.002 4.002 9 C -0.211 4.211 10 C 0.561 3.439 11 O -0.542 6.542 12 N -1.031 6.031 13 S 2.604 3.396 14 O -0.971 6.971 15 O -0.980 6.980 16 C -0.579 4.579 17 C 0.021 3.979 18 C -0.539 4.539 19 H 0.074 0.926 20 C -0.004 4.004 21 N -0.932 5.932 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.261 1.261 26 C -0.048 4.048 27 H 0.153 0.847 28 H 0.171 0.829 29 H 0.167 0.833 30 H 0.129 0.871 31 H 0.186 0.814 32 H 0.452 0.548 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.016 0.984 36 H 0.004 0.996 37 H 0.268 0.732 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.668 -10.255 27.136 30.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.037 4.037 3 C -0.051 4.051 4 C -0.071 4.071 5 C -0.133 4.133 6 C -0.078 4.078 7 C -0.088 4.088 8 C -0.022 4.022 9 C -0.233 4.233 10 C 0.353 3.647 11 O -0.420 6.420 12 N -0.798 5.798 13 S 2.703 3.297 14 O -0.961 6.961 15 O -0.970 6.970 16 C -0.712 4.712 17 C -0.017 4.017 18 C -0.578 4.578 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.572 5.572 22 Si 0.799 3.201 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.185 1.185 26 C -0.068 4.068 27 H 0.170 0.830 28 H 0.188 0.812 29 H 0.184 0.816 30 H 0.147 0.853 31 H 0.203 0.797 32 H 0.293 0.707 33 H 0.151 0.849 34 H 0.170 0.830 35 H 0.034 0.966 36 H 0.022 0.978 37 H 0.077 0.923 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.196 -10.751 25.825 30.516 hybrid contribution 0.204 1.180 -0.541 1.314 sum -11.991 -9.571 25.283 29.574 Atomic orbital electron populations 1.81311 1.13700 1.10745 1.08802 1.26030 0.92956 0.92265 0.92455 1.15953 0.83089 1.09595 0.96490 1.21666 0.95285 0.93710 0.96414 1.21438 0.92945 0.99139 0.99755 1.22120 1.02387 0.92510 0.90807 1.18785 0.92304 1.04027 0.93691 1.22516 0.94104 0.88660 0.96908 1.22958 0.94901 1.08454 0.96961 1.19050 0.81087 0.73863 0.90699 1.91027 1.68559 1.47501 1.34880 1.54669 1.16257 1.77181 1.31720 1.05214 0.73051 0.78155 0.73322 1.93562 1.33205 1.87357 1.81956 1.93547 1.79002 1.63263 1.61202 1.30239 1.11511 1.20493 1.08976 1.18832 0.94879 0.98115 0.89921 1.21476 1.28941 0.97159 1.10228 0.90814 1.26119 0.94703 1.03573 0.95894 1.70094 1.32167 1.39190 1.15717 0.85296 0.79224 0.78276 0.77352 1.19194 1.20850 1.18508 1.21517 0.93558 0.94454 0.97306 0.82970 0.81176 0.81605 0.85348 0.79681 0.70672 0.84869 0.83001 0.96585 0.97756 0.92345 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.95 18.54 19.00 0.35 -9.60 16 2 C 0.28 4.12 15.32 88.33 1.35 5.48 16 3 C -0.05 -0.42 5.72 -21.40 -0.12 -0.54 16 4 C -0.05 -0.18 9.75 22.61 0.22 0.04 16 5 C -0.12 -0.05 10.01 22.19 0.22 0.17 16 6 C -0.06 -0.13 9.41 22.63 0.21 0.08 16 7 C -0.09 -0.66 5.86 -20.18 -0.12 -0.78 16 8 C 0.00 -0.02 9.46 23.85 0.23 0.20 16 9 C -0.21 -2.39 9.41 23.61 0.22 -2.17 16 10 C 0.56 12.61 7.48 86.38 0.65 13.26 16 11 O -0.54 -17.78 14.33 12.04 0.17 -17.60 16 12 N -1.03 -21.73 5.60 -176.58 -0.99 -22.72 16 13 S 2.60 90.38 5.11 -56.49 -0.29 90.09 16 14 O -0.97 -36.41 18.08 -127.65 -2.31 -38.72 16 15 O -0.98 -42.85 17.03 -120.71 -2.06 -44.90 16 16 C -0.58 -22.46 5.82 71.98 0.42 -22.04 16 17 C 0.02 1.14 4.98 29.85 0.15 1.29 16 18 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 19 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 22 Si 0.98 43.69 29.54 68.60 2.03 45.72 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 26 C -0.05 -0.42 9.50 22.85 0.22 -0.21 16 27 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 28 H 0.17 -0.90 8.06 -2.91 -0.02 -0.93 16 29 H 0.17 -0.57 6.15 -2.91 -0.02 -0.59 16 30 H 0.13 1.92 7.52 -2.91 -0.02 1.90 16 31 H 0.19 0.20 6.06 -2.91 -0.02 0.19 16 32 H 0.45 4.78 8.77 -96.74 -0.85 3.93 16 33 H 0.13 5.11 7.19 -2.39 -0.02 5.10 16 34 H 0.15 4.81 8.14 -2.39 -0.02 4.79 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -89.18 360.46 1.81 -87.37 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 0.28 Total: 2.07 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 4.34 Total: -35.07 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -0.35 Total: -88.96 kcal Atomic # 8 Polarization: -97.04 SS G_CDS: -4.19 Total: -101.23 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 90.38 SS G_CDS: -0.29 Total: 90.09 kcal Total: -89.18 1.81 -87.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181291993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.231 kcal (2) G-P(sol) polarization free energy of solvation -89.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds