Wall clock time and date at job start Tue Mar 31 2020 18:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 S 1.65600 * 134.45533 * 204.64366 * 12 11 9 14 14 O 1.42098 * 106.40382 * 23.40527 * 13 12 11 15 15 O 1.42097 * 106.40269 * 156.32868 * 13 12 11 16 16 C 1.76205 * 107.21790 * 269.86823 * 13 12 11 17 17 C 1.36101 * 120.12594 * 114.72748 * 16 13 12 18 18 C 1.39318 * 121.06972 * 179.68276 * 17 16 13 19 19 C 1.36177 * 120.86462 * 0.63665 * 18 17 16 20 20 C 1.40390 * 119.61108 * 359.66702 * 19 18 17 21 21 C 1.40774 * 121.37556 * 180.02562 * 20 19 18 22 22 C 1.36571 * 118.14848 * 179.97438 * 21 20 19 23 23 C 1.39333 * 119.94384 * 359.97438 * 22 21 20 24 24 N 1.31091 * 121.74951 * 359.97438 * 23 22 21 25 25 C 1.33683 * 121.32195 * 0.02562 * 24 23 22 26 26 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 29 29 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 30 30 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 31 31 H 1.07999 * 119.46886 * 0.02562 * 17 16 13 32 32 H 1.08004 * 119.57021 * 180.30878 * 18 17 16 33 33 H 1.07995 * 120.18998 * 179.68904 * 19 18 17 34 34 H 1.07995 * 120.93088 * 359.97438 * 21 20 19 35 35 H 1.08007 * 120.03342 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.12728 * 179.97438 * 23 22 21 37 37 H 1.08999 * 113.76805 * 221.15228 * 26 12 11 38 38 H 1.09000 * 113.87378 * 89.76768 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 16 6.6305 -2.4294 -1.4866 14 8 7.2052 -1.2399 -2.0102 15 8 7.2046 -3.1628 -0.4135 16 6 6.4917 -3.5514 -2.8381 17 6 6.9290 -3.1886 -4.0749 18 6 6.8349 -4.0625 -5.1558 19 6 6.2898 -5.3015 -5.0070 20 6 5.8227 -5.7071 -3.7467 21 6 5.2532 -6.9795 -3.5508 22 6 4.8208 -7.3058 -2.2971 23 6 4.9505 -6.3888 -1.2561 24 7 5.4822 -5.2050 -1.4418 25 6 5.9253 -4.8230 -2.6439 26 6 4.1313 -2.6024 -0.0480 27 1 -0.4850 0.8401 0.0004 28 1 3.7023 0.5402 1.0280 29 1 3.4726 -1.2571 -2.2148 30 1 4.5870 0.0025 -1.5238 31 1 7.3611 -2.2094 -4.2195 32 1 7.1941 -3.7513 -6.1256 33 1 6.2176 -5.9683 -5.8535 34 1 5.1608 -7.6783 -4.3690 35 1 4.3787 -8.2738 -2.1126 36 1 4.6038 -6.6604 -0.2701 37 1 4.5862 -2.9145 0.8921 38 1 3.4712 -3.3587 -0.4728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192893570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:46 Heat of formation + Delta-G solvation = -34.185099 kcal Electronic energy + Delta-G solvation = -26960.323743 eV Core-core repulsion = 23088.900225 eV Total energy + Delta-G solvation = -3871.423518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.84564 -40.55226 -38.48878 -37.99213 -36.95948 -36.20698 -34.67295 -34.51699 -31.65304 -31.26378 -29.88697 -27.23740 -26.41504 -25.46487 -24.70128 -23.79068 -21.60352 -20.05640 -19.41354 -19.33443 -18.93388 -18.38278 -18.11816 -17.89131 -16.91894 -16.78870 -15.85937 -15.78503 -15.69505 -15.45572 -15.27456 -15.07011 -14.78427 -14.59314 -14.40728 -13.98968 -13.89313 -13.51116 -13.44544 -13.25891 -13.17648 -13.00434 -12.76648 -12.65284 -12.46115 -12.37266 -12.17882 -11.91639 -11.77484 -11.10395 -10.94482 -10.54173 -10.49301 -9.97964 -9.88089 -9.62991 -8.40852 -6.50868 -0.99385 -0.60129 -0.24670 0.71379 1.25955 1.32035 1.39415 1.74325 1.90934 2.19482 2.68060 2.81410 2.95963 3.15109 3.24166 3.29095 3.63647 3.69849 3.83934 3.95975 3.98550 4.04522 4.11532 4.28354 4.37792 4.51465 4.54371 4.64560 4.75103 4.79810 4.85364 4.96144 4.99188 5.04643 5.05360 5.23507 5.28590 5.46623 5.66966 5.77333 6.08096 6.55464 6.74916 6.85088 7.16666 8.74257 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.004533 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.517931 B = 6175.012077 C = 6752.345712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.033 3.967 3 Si 0.905 3.095 4 H -0.254 1.254 5 H -0.236 1.236 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.183 3.817 10 O -0.561 6.561 11 C 0.094 3.906 12 N -1.023 6.023 13 S 2.718 3.282 14 O -0.991 6.991 15 O -0.976 6.976 16 C -0.689 4.689 17 C 0.013 3.987 18 C -0.153 4.153 19 C -0.020 4.020 20 C -0.145 4.145 21 C -0.038 4.038 22 C -0.178 4.178 23 C 0.143 3.857 24 N -0.529 5.529 25 C 0.174 3.826 26 C 0.173 3.827 27 H 0.273 0.727 28 H 0.355 0.645 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.152 0.848 32 H 0.178 0.822 33 H 0.187 0.813 34 H 0.187 0.813 35 H 0.181 0.819 36 H 0.182 0.818 37 H 0.075 0.925 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.461 -14.440 -13.718 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.730 3.270 4 H -0.180 1.180 5 H -0.160 1.160 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.140 3.860 10 O -0.373 6.373 11 C -0.031 4.031 12 N -0.863 5.863 13 S 2.814 3.186 14 O -0.982 6.982 15 O -0.967 6.967 16 C -0.779 4.779 17 C -0.009 4.009 18 C -0.172 4.172 19 C -0.039 4.039 20 C -0.148 4.148 21 C -0.063 4.063 22 C -0.198 4.198 23 C -0.027 4.027 24 N -0.239 5.239 25 C 0.051 3.949 26 C 0.048 3.952 27 H 0.082 0.918 28 H 0.207 0.793 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.170 0.830 32 H 0.195 0.805 33 H 0.204 0.796 34 H 0.204 0.796 35 H 0.198 0.802 36 H 0.198 0.802 37 H 0.093 0.907 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.771 -13.948 -12.628 22.194 hybrid contribution -0.703 0.565 -0.816 1.216 sum 11.068 -13.383 -13.444 21.963 Atomic orbital electron populations 1.69982 1.07722 1.28606 1.49698 1.25706 0.95528 1.02429 0.93168 0.86539 0.80245 0.80057 0.80181 1.17992 1.16006 1.20585 1.21375 0.89366 0.94606 1.52098 0.92122 1.20772 0.90788 0.89857 0.84535 1.86457 1.67576 1.25939 1.57288 1.24045 0.88328 0.89886 1.00885 1.59938 1.30527 1.42049 1.53740 1.00743 0.71744 0.72590 0.73525 1.93479 1.76052 1.47149 1.81530 1.93493 1.75453 1.73766 1.53974 1.30517 1.18110 1.11673 1.17640 1.21258 0.88735 1.00295 0.90562 1.21488 1.01597 0.94186 0.99920 1.21885 0.89826 0.96255 0.95892 1.19294 1.03649 0.96667 0.95222 1.22033 0.91503 0.93584 0.99187 1.22340 1.01686 1.02582 0.93144 1.23664 0.89950 0.87538 1.01596 1.68073 1.12617 1.20549 1.22648 1.18257 0.94049 0.92481 0.90123 1.22589 0.86930 0.95028 0.90619 0.91791 0.79323 0.88339 0.90637 0.83010 0.80496 0.79622 0.79551 0.80197 0.80156 0.90686 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.27 13.96 21.45 0.30 -52.97 16 2 C 0.03 1.78 5.47 84.66 0.46 2.24 16 3 Si 0.90 39.86 24.31 68.60 1.67 41.53 16 4 H -0.25 -10.69 7.05 99.48 0.70 -9.99 16 5 H -0.24 -9.74 5.16 99.48 0.51 -9.22 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -28.78 9.19 25.60 0.24 -28.54 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 C 0.18 8.76 1.06 -10.88 -0.01 8.75 16 10 O -0.56 -27.51 13.35 -148.98 -1.99 -29.50 16 11 C 0.09 4.06 7.45 86.44 0.64 4.71 16 12 N -1.02 -43.23 4.12 -532.71 -2.19 -45.43 16 13 S 2.72 110.37 5.83 -56.49 -0.33 110.05 16 14 O -0.99 -42.20 16.90 -128.00 -2.16 -44.36 16 15 O -0.98 -44.64 17.29 -128.00 -2.21 -46.85 16 16 C -0.69 -22.87 5.91 22.34 0.13 -22.74 16 17 C 0.01 0.32 9.47 22.03 0.21 0.53 16 18 C -0.15 -2.59 9.96 22.05 0.22 -2.37 16 19 C -0.02 -0.30 9.78 22.31 0.22 -0.08 16 20 C -0.15 -3.15 5.74 -21.28 -0.12 -3.27 16 21 C -0.04 -0.54 9.90 22.50 0.22 -0.32 16 22 C -0.18 -2.70 10.03 22.14 0.22 -2.48 16 23 C 0.14 3.33 11.15 85.07 0.95 4.28 16 24 N -0.53 -17.31 9.15 -188.63 -1.73 -19.03 16 25 C 0.17 5.43 6.56 40.29 0.26 5.70 16 26 C 0.17 7.50 8.35 86.49 0.72 8.22 16 27 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.35 16.25 3.57 -74.06 -0.26 15.99 16 29 H 0.10 3.96 8.09 -2.38 -0.02 3.94 16 30 H 0.08 3.17 6.83 -2.39 -0.02 3.16 16 31 H 0.15 3.62 7.26 -2.91 -0.02 3.60 16 32 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.19 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.10 3.89 8.09 -2.39 -0.02 3.87 16 Total: -1.00 -80.09 332.88 -3.63 -83.72 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.65 Total: 28.22 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 4.37 Total: -25.37 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -3.62 Total: -117.43 kcal Atomic # 8 Polarization: -114.34 SS G_CDS: -6.37 Total: -120.71 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.67 Total: 41.53 kcal Atomic # 16 Polarization: 110.37 SS G_CDS: -0.33 Total: 110.05 kcal Total: -80.09 -3.63 -83.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192893570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.534 kcal (2) G-P(sol) polarization free energy of solvation -80.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds