Wall clock time and date at job start Tue Mar 31 2020 17:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99936 * 2 1 4 4 S 1.65599 * 120.00337 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40241 * 336.45887 * 4 2 1 6 6 O 1.42096 * 106.40379 * 203.53509 * 4 2 1 7 7 C 1.76199 * 107.21658 * 89.99803 * 4 2 1 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 2 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00032 * 0.48826 * 9 8 7 11 11 S 1.76209 * 120.00036 * 179.76965 * 10 9 8 12 12 O 1.42100 * 106.40042 * 23.56004 * 11 10 9 13 13 O 1.42097 * 106.39943 * 156.47856 * 11 10 9 14 14 N 1.65600 * 107.21338 * 270.02080 * 11 10 9 15 15 C 1.36936 * 120.00094 * 65.00296 * 14 11 10 16 16 H 1.07992 * 120.00175 * 359.97438 * 15 14 11 17 17 C 1.38815 * 119.99738 * 179.97438 * 15 14 11 18 18 N 1.31620 * 119.99907 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99806 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47225 * 59.99206 * 19 17 15 21 21 H 1.48501 * 109.46959 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46719 * 299.99524 * 19 17 15 23 23 C 1.38230 * 119.99845 * 359.78460 * 10 9 8 24 24 C 1.38234 * 120.00019 * 90.00010 * 7 4 2 25 25 H 1.09004 * 109.46766 * 269.99933 * 1 2 3 26 26 H 1.09001 * 109.47517 * 29.99808 * 1 2 3 27 27 H 1.08997 * 109.47269 * 150.00341 * 1 2 3 28 28 H 1.09001 * 109.47380 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46785 * 300.00327 * 3 2 1 30 30 H 1.09001 * 109.47297 * 60.00026 * 3 2 1 31 31 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 32 32 H 1.08004 * 120.00400 * 180.25458 * 9 8 7 33 33 H 0.97007 * 119.99670 * 244.99477 * 14 11 10 34 34 H 0.97001 * 119.99497 * 180.02562 * 18 17 15 35 35 H 1.08005 * 119.99901 * 179.97438 * 23 10 9 36 36 H 1.07999 * 120.00005 * 0.02562 * 24 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4115 -2.4063 0.5455 6 8 3.5760 -1.1564 0.5448 7 6 2.5538 -1.8865 -1.6822 8 6 1.6221 -2.6673 -2.3404 9 6 1.8243 -3.0182 -3.6620 10 6 2.9631 -2.5967 -4.3226 11 16 3.2238 -3.0491 -6.0055 12 8 1.9409 -3.3267 -6.5497 13 8 4.1054 -2.0769 -6.5503 14 7 4.0518 -4.4832 -6.0049 15 6 3.4634 -5.6134 -5.5032 16 1 2.4595 -5.5693 -5.1077 17 6 4.1573 -6.8156 -5.5032 18 7 5.3807 -6.8693 -5.9858 19 14 3.3543 -8.3575 -4.8196 20 1 2.1199 -8.6556 -5.5892 21 1 4.2974 -9.4989 -4.9337 22 1 3.0076 -8.1433 -3.3915 23 6 3.8975 -1.8206 -3.6628 24 6 3.6928 -1.4653 -2.3426 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 3.2692 1.0696 -0.0005 29 1 1.9341 1.8403 -0.8900 30 1 1.9342 1.8403 0.8900 31 1 0.7341 -2.9997 -1.8232 32 1 1.0944 -3.6248 -4.1775 33 1 4.9537 -4.5227 -6.3600 34 1 5.8654 -7.7096 -5.9861 35 1 4.7875 -1.4917 -4.1787 36 1 4.4231 -0.8593 -1.8270 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298398407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:47 Heat of formation + Delta-G solvation = -109.508186 kcal Electronic energy + Delta-G solvation = -24713.388536 eV Core-core repulsion = 20838.309620 eV Total energy + Delta-G solvation = -3875.078916 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -38.91146 -37.44147 -36.43181 -36.19448 -35.97276 -34.82509 -34.81804 -31.34534 -31.13697 -30.94952 -28.42241 -24.96857 -24.71646 -23.50357 -22.76868 -19.26125 -18.72172 -18.36286 -18.09323 -17.65412 -17.01238 -16.41698 -16.27665 -15.37888 -14.97157 -14.72201 -14.58819 -14.52033 -14.25062 -13.66692 -13.45244 -13.38826 -13.25047 -12.92203 -12.84560 -12.66556 -12.20024 -12.10799 -11.90318 -11.79115 -11.43360 -11.32840 -11.19736 -11.19233 -11.11225 -10.98024 -10.71528 -10.48639 -10.17510 -10.01343 -9.55563 -9.36840 -8.91497 -8.46182 -6.68645 -4.06444 0.14811 0.61323 1.40308 1.42046 2.70958 3.11760 3.14050 3.16178 3.39580 3.62844 3.93280 4.12701 4.32143 4.46258 4.65102 4.75035 4.92959 4.95975 4.99208 5.07261 5.25814 5.27745 5.42778 5.46203 5.46740 5.60629 5.67704 5.77508 6.01095 6.05121 6.06391 6.20714 6.40394 6.83859 6.94170 7.27564 8.46185 8.57088 9.01616 10.45676 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.003979 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.786767 B = 7034.947856 C = 7912.732480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.006 6.006 3 C 0.085 3.915 4 S 2.693 3.307 5 O -0.952 6.952 6 O -0.954 6.954 7 C -0.650 4.650 8 C -0.047 4.047 9 C -0.045 4.045 10 C -0.603 4.603 11 S 2.583 3.417 12 O -0.967 6.967 13 O -0.999 6.999 14 N -0.935 5.935 15 C -0.265 4.265 16 H 0.107 0.893 17 C 0.033 3.967 18 N -0.863 5.863 19 Si 0.925 3.075 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.050 4.050 24 C -0.048 4.048 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.412 0.588 34 H 0.280 0.720 35 H 0.143 0.857 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 11.756 10.503 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.845 5.845 3 C -0.061 4.061 4 S 2.783 3.217 5 O -0.943 6.943 6 O -0.945 6.945 7 C -0.737 4.737 8 C -0.067 4.067 9 C -0.065 4.065 10 C -0.681 4.681 11 S 2.674 3.326 12 O -0.957 6.957 13 O -0.988 6.988 14 N -0.686 5.686 15 C -0.409 4.409 16 H 0.125 0.875 17 C -0.177 4.177 18 N -0.503 5.503 19 Si 0.751 3.249 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.070 4.070 24 C -0.068 4.068 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.161 0.839 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.644 11.928 10.595 17.283 hybrid contribution 0.182 -0.771 0.258 0.833 sum -6.462 11.157 10.854 16.854 Atomic orbital electron populations 1.21508 0.77866 1.03475 1.02447 1.57340 1.15494 1.21718 1.89968 1.21611 0.97124 0.84904 1.02434 1.02047 0.73175 0.72363 0.74091 1.93580 1.65997 1.58264 1.76421 1.93570 1.40026 1.84317 1.76548 1.30993 1.04262 1.12613 1.25876 1.20993 0.97223 0.93698 0.94801 1.21088 0.95682 0.95835 0.93904 1.32806 1.00011 1.03883 1.31392 1.08230 0.74403 0.73154 0.76840 1.93470 1.40881 1.84743 1.76597 1.93409 1.65405 1.61178 1.78826 1.52089 1.30416 1.18533 1.67538 1.19441 0.98234 0.85321 1.37877 0.87515 1.25370 0.95498 0.99958 0.96893 1.69683 1.10546 1.28543 1.41570 0.85991 0.79169 0.80049 0.79702 1.19191 1.20430 1.19407 1.21017 0.97921 0.94082 0.93941 1.20948 0.94537 0.96616 0.94710 0.92075 0.90732 0.90767 0.89495 0.91871 0.91530 0.84195 0.83641 0.75249 0.91031 0.83923 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.33 59.85 0.62 1.32 16 2 N -1.01 -9.79 3.58 -129.20 -0.46 -10.25 16 3 C 0.08 0.64 10.67 59.85 0.64 1.28 16 4 S 2.69 35.58 5.64 -107.50 -0.61 34.97 16 5 O -0.95 -14.55 16.35 -57.17 -0.93 -15.48 16 6 O -0.95 -14.41 15.85 -57.17 -0.91 -15.31 16 7 C -0.65 -9.70 5.97 -39.58 -0.24 -9.94 16 8 C -0.05 -0.73 9.52 -39.58 -0.38 -1.11 16 9 C -0.05 -0.79 9.52 -39.59 -0.38 -1.17 16 10 C -0.60 -11.48 5.89 -39.59 -0.23 -11.71 16 11 S 2.58 55.22 5.70 -107.50 -0.61 54.61 16 12 O -0.97 -22.54 16.99 -57.17 -0.97 -23.51 16 13 O -1.00 -22.65 17.28 -57.17 -0.99 -23.64 16 14 N -0.94 -21.59 5.75 31.50 0.18 -21.41 16 15 C -0.27 -6.39 9.63 -15.06 -0.15 -6.54 16 16 H 0.11 2.41 7.82 -52.49 -0.41 2.00 16 17 C 0.03 0.79 5.50 -17.43 -0.10 0.70 16 18 N -0.86 -21.81 13.06 55.49 0.72 -21.09 16 19 Si 0.93 18.83 29.55 -169.99 -5.02 13.80 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.05 -0.86 9.52 -39.59 -0.38 -1.24 16 24 C -0.05 -0.73 9.52 -39.58 -0.38 -1.11 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 27 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 28 H 0.09 0.68 6.91 -51.93 -0.36 0.33 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.14 1.77 7.61 -52.48 -0.40 1.37 16 32 H 0.15 2.39 7.62 -52.48 -0.40 1.99 16 33 H 0.41 9.60 8.02 -34.47 -0.28 9.33 16 34 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.14 2.26 7.62 -52.48 -0.40 1.87 16 36 H 0.14 1.73 7.62 -52.49 -0.40 1.33 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -32.98 338.99 -9.33 -42.30 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -3.87 Total: 9.40 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -0.96 Total: -29.51 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.44 Total: -52.74 kcal Atomic # 8 Polarization: -74.14 SS G_CDS: -3.80 Total: -77.94 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 16 Polarization: 90.80 SS G_CDS: -1.22 Total: 89.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.98 -9.33 -42.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298398407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.207 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds