Wall clock time and date at job start Tue Mar 31 2020 17:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99936 * 2 1 4 4 S 1.65599 * 120.00337 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40241 * 336.45887 * 4 2 1 6 6 O 1.42096 * 106.40379 * 203.53509 * 4 2 1 7 7 C 1.76199 * 107.21658 * 89.99803 * 4 2 1 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 2 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00032 * 0.48826 * 9 8 7 11 11 S 1.76209 * 120.00036 * 179.76965 * 10 9 8 12 12 O 1.42100 * 106.40042 * 23.56004 * 11 10 9 13 13 O 1.42097 * 106.39943 * 156.47856 * 11 10 9 14 14 N 1.65600 * 107.21338 * 270.02080 * 11 10 9 15 15 C 1.36936 * 120.00094 * 65.00296 * 14 11 10 16 16 H 1.07992 * 120.00175 * 359.97438 * 15 14 11 17 17 C 1.38815 * 119.99738 * 179.97438 * 15 14 11 18 18 N 1.31620 * 119.99907 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99806 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47225 * 59.99206 * 19 17 15 21 21 H 1.48501 * 109.46959 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46719 * 299.99524 * 19 17 15 23 23 C 1.38230 * 119.99845 * 359.78460 * 10 9 8 24 24 C 1.38234 * 120.00019 * 90.00010 * 7 4 2 25 25 H 1.09004 * 109.46766 * 269.99933 * 1 2 3 26 26 H 1.09001 * 109.47517 * 29.99808 * 1 2 3 27 27 H 1.08997 * 109.47269 * 150.00341 * 1 2 3 28 28 H 1.09001 * 109.47380 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46785 * 300.00327 * 3 2 1 30 30 H 1.09001 * 109.47297 * 60.00026 * 3 2 1 31 31 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 32 32 H 1.08004 * 120.00400 * 180.25458 * 9 8 7 33 33 H 0.97007 * 119.99670 * 244.99477 * 14 11 10 34 34 H 0.97001 * 119.99497 * 180.02562 * 18 17 15 35 35 H 1.08005 * 119.99901 * 179.97438 * 23 10 9 36 36 H 1.07999 * 120.00005 * 0.02562 * 24 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4115 -2.4063 0.5455 6 8 3.5760 -1.1564 0.5448 7 6 2.5538 -1.8865 -1.6822 8 6 1.6221 -2.6673 -2.3404 9 6 1.8243 -3.0182 -3.6620 10 6 2.9631 -2.5967 -4.3226 11 16 3.2238 -3.0491 -6.0055 12 8 1.9409 -3.3267 -6.5497 13 8 4.1054 -2.0769 -6.5503 14 7 4.0518 -4.4832 -6.0049 15 6 3.4634 -5.6134 -5.5032 16 1 2.4595 -5.5693 -5.1077 17 6 4.1573 -6.8156 -5.5032 18 7 5.3807 -6.8693 -5.9858 19 14 3.3543 -8.3575 -4.8196 20 1 2.1199 -8.6556 -5.5892 21 1 4.2974 -9.4989 -4.9337 22 1 3.0076 -8.1433 -3.3915 23 6 3.8975 -1.8206 -3.6628 24 6 3.6928 -1.4653 -2.3426 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 3.2692 1.0696 -0.0005 29 1 1.9341 1.8403 -0.8900 30 1 1.9342 1.8403 0.8900 31 1 0.7341 -2.9997 -1.8232 32 1 1.0944 -3.6248 -4.1775 33 1 4.9537 -4.5227 -6.3600 34 1 5.8654 -7.7096 -5.9861 35 1 4.7875 -1.4917 -4.1787 36 1 4.4231 -0.8593 -1.8270 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298398407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:46 Heat of formation + Delta-G solvation = -136.088939 kcal Electronic energy + Delta-G solvation = -24714.541164 eV Core-core repulsion = 20838.309620 eV Total energy + Delta-G solvation = -3876.231544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.25692 -38.55828 -38.13795 -37.20445 -37.02088 -36.77666 -36.53400 -32.91827 -32.68953 -32.27233 -28.99264 -26.48652 -25.68635 -24.88059 -24.10232 -20.47748 -20.27927 -20.08521 -19.31658 -18.80510 -18.45435 -17.97630 -17.45299 -16.76815 -16.33145 -15.99176 -15.95730 -15.61457 -15.41370 -15.30058 -14.71622 -14.69792 -14.41474 -14.04847 -13.84799 -13.56794 -13.40751 -13.27879 -13.15155 -13.07102 -13.04764 -12.90234 -12.69304 -12.64386 -12.52870 -12.50622 -12.38980 -12.12759 -11.89493 -11.59084 -10.93912 -10.23222 -10.22347 -10.10759 -8.37326 -5.93077 -0.97369 -0.68952 -0.34797 0.09832 1.47774 1.50666 1.56572 1.71755 2.08208 2.29511 2.54867 2.60354 2.87715 3.06493 3.16496 3.39563 3.74189 3.76821 3.80295 4.12376 4.25026 4.44093 4.48220 4.58907 4.66846 4.74426 4.76388 4.76591 4.93315 4.95614 4.98065 5.02457 5.05120 5.49515 5.56197 5.61102 6.69174 6.89098 7.26123 8.80337 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.003979 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.786767 B = 7034.947856 C = 7912.732480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.998 5.998 3 C 0.073 3.927 4 S 2.711 3.289 5 O -0.972 6.972 6 O -0.972 6.972 7 C -0.644 4.644 8 C -0.048 4.048 9 C -0.055 4.055 10 C -0.625 4.625 11 S 2.660 3.340 12 O -0.986 6.986 13 O -1.004 7.004 14 N -0.967 5.967 15 C -0.314 4.314 16 H 0.111 0.889 17 C -0.013 4.013 18 N -0.922 5.922 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.264 1.264 23 C -0.058 4.058 24 C -0.047 4.047 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.152 0.848 33 H 0.408 0.592 34 H 0.274 0.726 35 H 0.154 0.846 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 14.506 12.729 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.840 5.840 3 C -0.071 4.071 4 S 2.799 3.201 5 O -0.962 6.962 6 O -0.962 6.962 7 C -0.729 4.729 8 C -0.067 4.067 9 C -0.075 4.075 10 C -0.710 4.710 11 S 2.751 3.249 12 O -0.977 6.977 13 O -0.994 6.994 14 N -0.720 5.720 15 C -0.449 4.449 16 H 0.129 0.871 17 C -0.216 4.216 18 N -0.564 5.564 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.078 4.078 24 C -0.067 4.067 25 H 0.090 0.910 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.187 0.813 32 H 0.170 0.830 33 H 0.243 0.757 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.333 14.521 12.762 21.052 hybrid contribution 0.481 -0.997 -0.258 1.137 sum -7.852 13.524 12.504 20.023 Atomic orbital electron populations 1.21819 0.76316 1.04771 1.03648 1.57139 1.16396 1.21049 1.89367 1.21906 0.96795 0.84020 1.04427 1.01505 0.72700 0.72782 0.73065 1.93555 1.66331 1.59937 1.76378 1.93548 1.41418 1.84781 1.76459 1.31543 1.03511 1.10925 1.26928 1.21315 0.98400 0.93107 0.93903 1.21295 0.95265 0.95778 0.95154 1.31909 1.02719 1.07808 1.28541 1.03624 0.73232 0.72077 0.75966 1.93475 1.41844 1.85100 1.77262 1.93439 1.66074 1.60892 1.78994 1.51396 1.29328 1.19597 1.71686 1.19507 0.99469 0.86509 1.39420 0.87120 1.25996 0.96036 1.02020 0.97548 1.69775 1.11980 1.28581 1.46045 0.85195 0.78219 0.77220 0.79161 1.18856 1.20646 1.18927 1.21277 0.97714 0.93658 0.95165 1.21304 0.95200 0.96305 0.93851 0.91044 0.88234 0.90772 0.89896 0.90040 0.89509 0.81302 0.83019 0.75663 0.91654 0.82796 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.33 127.77 1.32 2.20 16 2 N -1.00 -15.44 3.58 -562.68 -2.02 -17.46 16 3 C 0.07 0.79 10.67 127.77 1.36 2.16 16 4 S 2.71 62.81 5.64 -56.49 -0.32 62.49 16 5 O -0.97 -26.84 16.35 -128.00 -2.09 -28.93 16 6 O -0.97 -26.41 15.85 -128.00 -2.03 -28.44 16 7 C -0.64 -17.14 5.97 22.27 0.13 -17.01 16 8 C -0.05 -1.33 9.52 22.27 0.21 -1.12 16 9 C -0.06 -1.82 9.52 22.27 0.21 -1.61 16 10 C -0.63 -22.82 5.89 22.27 0.13 -22.69 16 11 S 2.66 112.46 5.70 -56.49 -0.32 112.14 16 12 O -0.99 -45.41 16.99 -128.00 -2.17 -47.58 16 13 O -1.00 -44.39 17.28 -128.00 -2.21 -46.60 16 14 N -0.97 -46.08 5.75 -54.27 -0.31 -46.39 16 15 C -0.31 -15.72 9.63 84.03 0.81 -14.91 16 16 H 0.11 5.17 7.82 -2.91 -0.02 5.15 16 17 C -0.01 -0.68 5.50 84.86 0.47 -0.21 16 18 N -0.92 -49.63 13.06 21.65 0.28 -49.35 16 19 Si 0.98 40.23 29.55 68.60 2.03 42.25 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 C -0.06 -1.88 9.52 22.27 0.21 -1.67 16 24 C -0.05 -1.28 9.52 22.27 0.21 -1.07 16 25 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.10 0.64 8.07 -2.39 -0.02 0.62 16 27 H 0.07 0.85 7.79 -2.39 -0.02 0.83 16 28 H 0.08 1.00 6.91 -2.39 -0.02 0.98 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.17 3.69 7.61 -2.91 -0.02 3.67 16 32 H 0.15 4.76 7.62 -2.91 -0.02 4.74 16 33 H 0.41 20.02 8.02 -96.74 -0.78 19.25 16 34 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.15 4.55 7.62 -2.91 -0.02 4.53 16 36 H 0.17 3.56 7.62 -2.91 -0.02 3.54 16 Total: -1.00 -71.88 338.99 -3.74 -75.63 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.35 Total: 28.17 kcal Atomic # 6 Polarization: -60.99 SS G_CDS: 5.07 Total: -55.92 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -2.05 Total: -113.19 kcal Atomic # 8 Polarization: -143.05 SS G_CDS: -8.51 Total: -151.56 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 16 Polarization: 175.27 SS G_CDS: -0.64 Total: 174.62 kcal Total: -71.88 -3.74 -75.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298398407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.463 kcal (2) G-P(sol) polarization free energy of solvation -71.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds