Wall clock time and date at job start Tue Mar 31 2020 17:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75888 * 125.20090 * 2 1 4 4 C 1.75891 * 90.96650 * 179.97438 * 3 2 1 5 5 S 1.76199 * 125.20051 * 179.97438 * 4 3 2 6 6 O 1.42095 * 106.40227 * 156.48269 * 5 4 3 7 7 O 1.42107 * 106.40094 * 23.56686 * 5 4 3 8 8 N 1.65593 * 107.21807 * 270.02524 * 5 4 3 9 9 C 1.46506 * 120.00245 * 65.00204 * 8 5 4 10 10 C 1.52997 * 109.47289 * 165.00019 * 9 8 5 11 11 C 1.52996 * 109.47131 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47130 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00100 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99653 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00192 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47123 * 89.99910 * 16 14 12 18 18 H 1.48506 * 109.46940 * 210.00033 * 16 14 12 19 19 H 1.48501 * 109.47006 * 329.99902 * 16 14 12 20 20 C 1.33388 * 109.59112 * 0.26478 * 4 3 2 21 21 C 1.33385 * 125.20163 * 179.97438 * 2 1 3 22 22 N 1.48027 * 122.54263 * 0.04078 * 21 2 1 23 23 O 1.21794 * 120.00393 * 179.97438 * 22 21 2 24 24 O 1.21808 * 119.99766 * 359.97438 * 22 21 2 25 25 H 1.09001 * 109.47342 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47156 * 120.02533 * 1 2 3 27 27 H 1.09005 * 109.47268 * 240.02574 * 1 2 3 28 28 H 0.97000 * 120.00411 * 244.99876 * 8 5 4 29 29 H 1.09001 * 109.47060 * 285.00288 * 9 8 5 30 30 H 1.09004 * 109.47073 * 44.99777 * 9 8 5 31 31 H 1.09001 * 109.46832 * 299.99854 * 10 9 8 32 32 H 1.08996 * 109.46952 * 59.99873 * 10 9 8 33 33 H 1.09001 * 109.46997 * 299.99574 * 11 10 9 34 34 H 1.09004 * 109.47298 * 59.99717 * 11 10 9 35 35 H 0.96997 * 120.00125 * 180.02562 * 15 14 12 36 36 H 1.08000 * 122.53110 * 179.71409 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5209 1.4372 0.0000 4 6 3.9751 0.4477 0.0008 5 16 5.6248 1.0667 0.0006 6 8 6.4395 0.0377 0.5452 7 8 5.5615 2.3779 0.5448 8 7 6.0837 1.2385 -1.5812 9 6 5.4033 2.2112 -2.4398 10 6 6.2330 2.4439 -3.7040 11 6 5.5228 3.4602 -4.6004 12 6 6.3404 3.6899 -5.8453 13 1 7.2731 3.1634 -5.9835 14 6 5.8971 4.5715 -6.8083 15 7 6.6109 4.7724 -7.8944 16 14 4.2835 5.4818 -6.5695 17 1 4.5382 6.7648 -5.8665 18 1 3.6693 5.7562 -7.8935 19 1 3.3601 4.6479 -5.7587 20 6 3.6379 -0.8428 -0.0048 21 6 2.2759 -1.0899 0.0005 22 7 1.7153 -2.4599 0.0002 23 8 2.4608 -3.4231 0.0002 24 8 0.5083 -2.6240 0.0000 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3633 -0.5142 -0.8897 27 1 -0.3634 -0.5135 0.8902 28 1 6.8030 0.6952 -1.9393 29 1 4.4208 1.8279 -2.7155 30 1 5.2882 3.1525 -1.9023 31 1 7.2154 2.8273 -3.4283 32 1 6.3480 1.5027 -4.2415 33 1 4.5402 3.0772 -4.8761 34 1 5.4081 4.4014 -4.0626 35 1 6.2993 5.3928 -8.5717 36 1 4.3721 -1.6349 -0.0100 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343460992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:35 Heat of formation + Delta-G solvation = -54.718689 kcal Electronic energy + Delta-G solvation = -23739.879378 eV Core-core repulsion = 19867.176314 eV Total energy + Delta-G solvation = -3872.703065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.57005 -38.88712 -37.56449 -36.95700 -36.34363 -36.22076 -33.36516 -33.09561 -31.32336 -29.40833 -26.98796 -26.07560 -24.24599 -23.00763 -21.67393 -20.62096 -19.52853 -19.30732 -18.52653 -18.00956 -17.96260 -17.59982 -17.03762 -16.61736 -16.07820 -15.03499 -14.98929 -14.80621 -14.52401 -14.17182 -13.87089 -13.28794 -13.14197 -13.06734 -12.62212 -12.53347 -12.45015 -12.36705 -12.28518 -11.98607 -11.88738 -11.79647 -11.47204 -11.32910 -11.28015 -11.04704 -10.25766 -10.24424 -9.97304 -9.84524 -9.66691 -9.54279 -9.32324 -8.63973 -6.13877 -4.13236 -0.76391 -0.12335 0.07211 0.16645 0.56329 1.37990 1.53077 2.66460 3.22555 3.30110 3.30276 3.31196 3.58806 3.87955 4.07920 4.35331 4.44630 4.71808 4.73580 4.80199 4.97115 4.99031 5.19112 5.26306 5.31391 5.53712 5.72116 5.93304 6.25641 6.40225 6.62376 6.80311 7.10057 7.23276 7.28175 7.66577 8.42147 8.90345 9.47494 10.99445 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.003235 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.301310 B = 8652.756704 C = 9583.871117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.082 4.082 3 S 0.346 5.654 4 C -0.798 4.798 5 S 2.718 3.282 6 O -0.946 6.946 7 O -0.941 6.941 8 N -1.105 6.105 9 C 0.105 3.895 10 C -0.108 4.108 11 C -0.013 4.013 12 C -0.524 4.524 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.901 5.901 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.045 3.955 21 C -0.091 4.091 22 N 0.048 4.952 23 O -0.154 6.154 24 O -0.156 6.156 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.424 0.576 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.018 0.982 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 -9.247 18.658 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.205 4.205 3 S 0.611 5.389 4 C -0.996 4.996 5 S 2.799 3.201 6 O -0.936 6.936 7 O -0.931 6.931 8 N -0.868 5.868 9 C -0.020 4.020 10 C -0.147 4.147 11 C -0.052 4.052 12 C -0.562 4.562 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.540 5.540 16 Si 0.707 3.293 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.191 1.191 20 C 0.013 3.987 21 C -0.188 4.188 22 N 0.567 4.433 23 O -0.370 6.370 24 O -0.371 6.371 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.260 0.740 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.563 -6.620 19.302 23.454 hybrid contribution -0.964 -1.833 -0.567 2.147 sum -12.526 -8.452 18.734 24.069 Atomic orbital electron populations 1.20860 0.84305 1.04751 1.06067 1.25622 1.03363 0.96920 0.94643 1.84721 0.89507 1.00855 1.63806 1.36319 1.29445 1.06229 1.27618 1.01575 0.71796 0.73834 0.72868 1.93621 1.64432 1.58967 1.76577 1.93638 1.85864 1.37086 1.76540 1.55463 1.48393 1.52067 1.30900 1.21733 0.96049 0.90805 0.93439 1.21680 0.99090 1.01218 0.92720 1.19556 0.96405 0.93924 0.95278 1.21080 1.08040 1.25479 1.01611 0.90912 1.25040 0.97060 0.96407 0.94972 1.69905 1.38545 1.36406 1.09105 0.86781 0.84395 0.80532 0.77567 1.20146 1.21337 1.19068 1.19392 0.94031 0.96270 0.89003 1.20166 0.93933 0.83109 1.21603 1.42995 1.00770 1.01979 0.97580 1.94586 1.57867 1.31039 1.53539 1.94525 0.97188 1.91951 1.53451 0.89554 0.87524 0.87683 0.74005 0.92149 0.90185 0.91464 0.91737 0.96396 0.96589 0.92615 0.80186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 8.76 36.01 0.32 -0.23 16 2 C -0.08 -0.66 6.51 -36.00 -0.23 -0.90 16 3 S 0.35 2.82 23.20 -107.50 -2.49 0.33 16 4 C -0.80 -7.92 6.55 29.04 0.19 -7.73 16 5 S 2.72 30.99 5.88 -107.50 -0.63 30.36 16 6 O -0.95 -12.54 17.80 -57.17 -1.02 -13.56 16 7 O -0.94 -12.92 17.38 -57.17 -0.99 -13.92 16 8 N -1.10 -12.19 6.00 -10.61 -0.06 -12.25 16 9 C 0.10 1.37 6.22 -4.04 -0.03 1.34 16 10 C -0.11 -1.81 5.29 -26.73 -0.14 -1.95 16 11 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 12 C -0.52 -14.13 9.66 -34.44 -0.33 -14.46 16 13 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 14 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 15 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 16 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 20 C 0.05 0.45 9.38 -41.21 -0.39 0.06 16 21 C -0.09 -0.92 6.79 -81.57 -0.55 -1.48 16 22 N 0.05 0.56 4.45 33.16 0.15 0.70 16 23 O -0.15 -1.97 18.78 -29.46 -0.55 -2.53 16 24 O -0.16 -1.76 16.59 -29.46 -0.49 -2.25 16 25 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.11 0.57 7.72 -51.93 -0.40 0.17 16 27 H 0.10 0.51 7.73 -51.93 -0.40 0.11 16 28 H 0.42 3.99 8.65 -34.47 -0.30 3.69 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.02 7.75 -51.93 -0.40 0.62 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 34 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.18 1.60 7.93 -52.49 -0.42 1.18 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -33.80 344.37 -10.14 -43.94 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.96 Total: -1.80 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -1.38 Total: -23.97 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.86 Total: -37.72 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -3.05 Total: -32.26 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Atomic # 16 Polarization: 33.81 SS G_CDS: -3.13 Total: 30.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.80 -10.14 -43.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343460992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.778 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds