Wall clock time and date at job start Tue Mar 31 2020 18:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 120.00411 * 2 1 4 4 H 1.48502 * 109.47251 * 269.99997 * 3 2 1 5 5 H 1.48498 * 109.47267 * 29.99971 * 3 2 1 6 6 H 1.48500 * 109.47343 * 150.00117 * 3 2 1 7 7 C 1.38956 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00288 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99977 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00044 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00146 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47255 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00068 * 179.97438 * 13 12 10 15 15 O 1.21557 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.47851 * 120.00217 * 180.02562 * 14 13 12 17 17 C 1.39575 * 120.12744 * 0.02562 * 16 14 13 18 18 C 1.38167 * 119.82090 * 179.97438 * 17 16 14 19 19 F 1.35101 * 119.95217 * 179.97438 * 18 17 16 20 20 C 1.38601 * 120.09524 * 359.97438 * 18 17 16 21 21 C 1.38292 * 120.26528 * 0.04602 * 20 18 17 22 22 C 1.50699 * 119.91268 * 179.97438 * 21 20 18 23 23 F 1.39899 * 109.47253 * 269.98043 * 22 21 20 24 24 F 1.39902 * 109.47288 * 29.97606 * 22 21 20 25 25 F 1.39897 * 109.47484 * 149.97969 * 22 21 20 26 26 C 1.37987 * 120.17739 * 359.95716 * 21 20 18 27 27 H 0.97005 * 119.99250 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00012 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47222 * 59.99864 * 12 10 9 30 30 H 1.08999 * 109.47371 * 299.99926 * 12 10 9 31 31 H 0.97004 * 119.99924 * 0.02562 * 13 12 10 32 32 H 1.07994 * 120.08779 * 359.70019 * 17 16 14 33 33 H 1.08000 * 119.86165 * 180.02562 * 20 18 17 34 34 H 1.08001 * 120.05139 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0011 13 7 2.1954 -5.9766 0.0004 14 6 1.7461 -7.2472 0.0013 15 8 0.5510 -7.4693 0.0022 16 6 2.7067 -8.3711 0.0011 17 6 4.0796 -8.1192 0.0006 18 6 4.9717 -9.1743 0.0009 19 9 6.3011 -8.9335 -0.0001 20 6 4.5048 -10.4793 0.0024 21 6 3.1454 -10.7331 0.0025 22 6 2.6464 -12.1551 0.0034 23 9 2.4917 -12.5960 -1.3152 24 9 3.5701 -12.9730 0.6631 25 9 1.4144 -12.2166 0.6633 26 6 2.2445 -9.6879 0.0020 27 1 -0.4849 0.8401 0.0004 28 1 0.3532 -2.3906 0.0005 29 1 0.6164 -4.9209 -0.8886 30 1 0.6171 -4.9205 0.8913 31 1 3.1491 -5.7993 0.0000 32 1 4.4435 -7.1025 -0.0046 33 1 5.2055 -11.3011 0.0031 34 1 1.1833 -9.8885 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343509710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:04 Heat of formation + Delta-G solvation = -241.990482 kcal Electronic energy + Delta-G solvation = -27237.826868 eV Core-core repulsion = 22249.322315 eV Total energy + Delta-G solvation = -4988.504552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.073 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.56395 -49.38388 -48.07516 -48.01307 -40.54044 -38.91942 -38.06478 -34.72644 -33.93165 -32.70825 -31.47218 -31.32166 -28.04133 -26.63630 -25.05223 -23.81561 -22.74446 -20.80721 -19.87138 -19.15890 -18.88911 -18.83330 -18.15927 -17.41771 -16.90450 -16.75191 -16.43407 -16.13727 -15.66100 -15.47081 -15.31959 -14.89314 -14.82823 -14.60532 -14.44541 -14.23165 -14.16047 -14.13265 -14.08012 -13.72838 -13.58719 -13.09491 -12.86183 -12.52123 -12.30733 -12.06969 -12.05439 -11.70001 -11.18194 -10.51398 -10.39488 -10.18784 -9.94072 -9.71323 -9.42863 -9.04358 -8.74844 -8.18529 -6.58851 -4.01177 0.02224 0.35591 2.12747 2.26814 2.93650 3.06437 3.17629 3.18581 3.21283 3.23647 3.46713 3.64213 3.75984 3.97427 4.04338 4.19261 4.34529 4.42520 4.49091 4.74714 4.84471 5.09537 5.15792 5.28436 5.42133 5.56666 5.76397 5.81369 5.93892 6.04047 6.39522 7.39204 7.48031 7.83003 8.09007 8.35955 8.96720 9.30150 9.77252 10.57784 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.002201 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.618358 B =12717.012122 C =13648.845649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.545 5.545 10 C 0.425 3.575 11 O -0.599 6.599 12 C 0.108 3.892 13 N -0.697 5.697 14 C 0.556 3.444 15 O -0.533 6.533 16 C -0.096 4.096 17 C -0.088 4.088 18 C 0.100 3.900 19 F -0.125 7.125 20 C -0.086 4.086 21 C -0.166 4.166 22 C 0.515 3.485 23 F -0.172 7.172 24 F -0.174 7.174 25 F -0.170 7.170 26 C -0.023 4.023 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.411 0.589 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.428 -21.878 0.007 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.486 6.486 12 C -0.020 4.020 13 N -0.350 5.350 14 C 0.341 3.659 15 O -0.411 6.411 16 C -0.099 4.099 17 C -0.107 4.107 18 C 0.080 3.920 19 F -0.103 7.103 20 C -0.105 4.105 21 C -0.167 4.167 22 C 0.460 3.540 23 F -0.153 7.153 24 F -0.156 7.156 25 F -0.151 7.151 26 C -0.043 4.043 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.251 0.749 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.263 -21.822 0.012 22.448 hybrid contribution 0.436 0.791 -0.011 0.903 sum 5.699 -21.031 0.001 21.790 Atomic orbital electron populations 1.69611 1.06047 1.28670 1.48931 1.25344 0.95678 1.00017 0.96603 0.85801 0.79244 0.80380 0.78552 1.20203 1.20742 1.19271 1.19736 0.93490 0.81920 1.48455 0.87597 1.41790 1.09533 1.04467 1.62185 1.19665 0.88279 0.84927 0.86068 1.90499 1.13655 1.86757 1.57682 1.21047 0.91685 0.85465 1.03755 1.45618 1.11972 1.04461 1.72991 1.17857 0.87813 0.82524 0.77663 1.90811 1.15546 1.84665 1.50088 1.19770 0.92643 0.93990 1.03535 1.21736 0.92256 1.00419 0.96331 1.17215 0.78210 0.92832 1.03703 1.91588 1.29892 1.95015 1.93791 1.21037 0.94984 0.96829 0.97652 1.19654 0.94533 0.92169 1.10389 1.18032 0.75533 0.86282 0.74128 1.93255 1.95489 1.90819 1.35744 1.93210 1.66118 1.75126 1.81107 1.93235 1.44124 1.96786 1.80983 1.21103 1.01265 0.89969 0.91917 0.91482 0.76966 0.89318 0.89311 0.74947 0.82603 0.82848 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.20 13.05 55.50 0.72 -22.47 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.00 29.55 -169.99 -5.02 14.98 16 4 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.31 -8.06 9.68 -14.93 -0.14 -8.20 16 8 H 0.11 2.90 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -12.94 5.29 -10.96 -0.06 -13.00 16 10 C 0.43 9.19 7.85 -10.99 -0.09 9.10 16 11 O -0.60 -14.49 15.24 5.54 0.08 -14.41 16 12 C 0.11 1.82 6.15 -5.19 -0.03 1.79 16 13 N -0.70 -10.46 5.48 -62.43 -0.34 -10.80 16 14 C 0.56 7.91 7.77 -12.33 -0.10 7.81 16 15 O -0.53 -8.97 16.35 5.32 0.09 -8.89 16 16 C -0.10 -1.07 5.87 -104.97 -0.62 -1.69 16 17 C -0.09 -0.86 9.52 -39.11 -0.37 -1.23 16 18 C 0.10 0.91 7.29 -39.47 -0.29 0.62 16 19 F -0.12 -1.21 17.26 2.25 0.04 -1.17 16 20 C -0.09 -0.69 9.37 -39.43 -0.37 -1.06 16 21 C -0.17 -1.46 5.45 -104.69 -0.57 -2.03 16 22 C 0.51 4.44 3.36 36.00 0.12 4.57 16 23 F -0.17 -1.57 17.30 2.25 0.04 -1.53 16 24 F -0.17 -1.46 16.45 2.25 0.04 -1.43 16 25 F -0.17 -1.59 16.45 2.25 0.04 -1.56 16 26 C -0.02 -0.24 8.94 -39.18 -0.35 -0.59 16 27 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.40 9.02 7.90 -40.82 -0.32 8.70 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.41 5.95 5.47 -40.82 -0.22 5.73 16 32 H 0.16 1.43 6.40 -52.49 -0.34 1.09 16 33 H 0.15 0.91 7.59 -52.49 -0.40 0.51 16 34 H 0.16 1.58 7.19 -52.49 -0.38 1.21 16 LS Contribution 326.81 15.07 4.92 4.92 Total: -1.00 -29.46 326.81 -4.36 -33.83 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -2.01 Total: 11.85 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -2.90 Total: 9.67 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.32 Total: -46.27 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.17 Total: -23.30 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.15 Total: -5.69 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.46 -4.36 -33.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343509710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.165 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds