Wall clock time and date at job start Tue Mar 31 2020 18:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 120.00411 * 2 1 4 4 H 1.48502 * 109.47251 * 269.99997 * 3 2 1 5 5 H 1.48498 * 109.47267 * 29.99971 * 3 2 1 6 6 H 1.48500 * 109.47343 * 150.00117 * 3 2 1 7 7 C 1.38956 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00288 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99977 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00044 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00146 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47255 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00068 * 179.97438 * 13 12 10 15 15 O 1.21557 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.47851 * 120.00217 * 180.02562 * 14 13 12 17 17 C 1.39575 * 120.12744 * 0.02562 * 16 14 13 18 18 C 1.38167 * 119.82090 * 179.97438 * 17 16 14 19 19 F 1.35101 * 119.95217 * 179.97438 * 18 17 16 20 20 C 1.38601 * 120.09524 * 359.97438 * 18 17 16 21 21 C 1.38292 * 120.26528 * 0.04602 * 20 18 17 22 22 C 1.50699 * 119.91268 * 179.97438 * 21 20 18 23 23 F 1.39899 * 109.47253 * 269.98043 * 22 21 20 24 24 F 1.39902 * 109.47288 * 29.97606 * 22 21 20 25 25 F 1.39897 * 109.47484 * 149.97969 * 22 21 20 26 26 C 1.37987 * 120.17739 * 359.95716 * 21 20 18 27 27 H 0.97005 * 119.99250 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00012 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47222 * 59.99864 * 12 10 9 30 30 H 1.08999 * 109.47371 * 299.99926 * 12 10 9 31 31 H 0.97004 * 119.99924 * 0.02562 * 13 12 10 32 32 H 1.07994 * 120.08779 * 359.70019 * 17 16 14 33 33 H 1.08000 * 119.86165 * 180.02562 * 20 18 17 34 34 H 1.08001 * 120.05139 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0011 13 7 2.1954 -5.9766 0.0004 14 6 1.7461 -7.2472 0.0013 15 8 0.5510 -7.4693 0.0022 16 6 2.7067 -8.3711 0.0011 17 6 4.0796 -8.1192 0.0006 18 6 4.9717 -9.1743 0.0009 19 9 6.3011 -8.9335 -0.0001 20 6 4.5048 -10.4793 0.0024 21 6 3.1454 -10.7331 0.0025 22 6 2.6464 -12.1551 0.0034 23 9 2.4917 -12.5960 -1.3152 24 9 3.5701 -12.9730 0.6631 25 9 1.4144 -12.2166 0.6633 26 6 2.2445 -9.6879 0.0020 27 1 -0.4849 0.8401 0.0004 28 1 0.3532 -2.3906 0.0005 29 1 0.6164 -4.9209 -0.8886 30 1 0.6171 -4.9205 0.8913 31 1 3.1491 -5.7993 0.0000 32 1 4.4435 -7.1025 -0.0046 33 1 5.2055 -11.3011 0.0031 34 1 1.1833 -9.8885 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343509710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:04 Heat of formation + Delta-G solvation = -260.930029 kcal Electronic energy + Delta-G solvation = -27238.648148 eV Core-core repulsion = 22249.322315 eV Total energy + Delta-G solvation = -4989.325833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.073 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.26197 -50.13129 -48.76820 -48.71783 -41.58654 -40.29640 -39.40248 -36.31782 -35.51119 -33.62303 -33.32165 -32.12343 -29.47038 -27.37866 -26.69517 -24.95362 -23.49780 -21.84789 -21.44578 -20.33164 -19.93096 -19.58360 -19.53933 -18.43066 -17.77427 -17.63064 -17.43036 -17.07979 -16.98000 -16.70747 -16.57266 -16.33858 -15.76262 -15.61826 -15.53845 -15.49745 -15.15138 -15.02745 -14.85937 -14.85435 -14.50841 -14.06948 -13.86813 -13.77853 -13.54913 -13.44051 -13.26507 -12.91148 -12.82547 -12.45828 -12.13031 -11.57321 -11.37627 -10.74732 -10.57995 -10.34363 -10.15139 -10.09096 -8.51680 -6.01613 -0.76283 -0.41304 1.34756 1.36977 1.39629 1.43681 1.55422 1.81643 1.89670 2.26411 2.29310 2.46857 2.73186 2.95150 3.09025 3.15990 3.27865 3.42744 3.58106 3.67275 3.70588 3.99665 4.20508 4.35896 4.41201 4.43060 4.53999 4.69159 4.78901 5.08745 5.29908 5.38331 5.90928 6.29858 6.47380 6.91751 7.03261 7.43448 7.93311 8.65071 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.002201 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.618358 B =12717.012122 C =13648.845649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.120 3.880 13 N -0.699 5.699 14 C 0.561 3.439 15 O -0.561 6.561 16 C -0.108 4.108 17 C -0.083 4.083 18 C 0.098 3.902 19 F -0.127 7.127 20 C -0.067 4.067 21 C -0.164 4.164 22 C 0.520 3.480 23 F -0.174 7.174 24 F -0.170 7.170 25 F -0.175 7.175 26 C -0.021 4.021 27 H 0.280 0.720 28 H 0.400 0.600 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.414 0.586 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 -22.861 0.007 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.219 3.781 11 O -0.512 6.512 12 C -0.008 4.008 13 N -0.353 5.353 14 C 0.349 3.651 15 O -0.441 6.441 16 C -0.112 4.112 17 C -0.102 4.102 18 C 0.079 3.921 19 F -0.105 7.105 20 C -0.086 4.086 21 C -0.166 4.166 22 C 0.466 3.534 23 F -0.155 7.155 24 F -0.151 7.151 25 F -0.156 7.156 26 C -0.040 4.040 27 H 0.089 0.911 28 H 0.234 0.766 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.254 0.746 32 H 0.177 0.823 33 H 0.197 0.803 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.039 -22.827 0.010 23.613 hybrid contribution 0.244 0.965 -0.010 0.996 sum 6.283 -21.862 0.000 22.747 Atomic orbital electron populations 1.69674 1.06986 1.29642 1.49231 1.26108 0.96512 1.02655 0.95796 0.84888 0.77951 0.76600 0.78695 1.19600 1.19754 1.19430 1.19729 0.92978 0.83508 1.50348 0.89499 1.41838 1.09652 1.04598 1.63253 1.20392 0.88129 0.85900 0.83692 1.90478 1.15121 1.87514 1.58131 1.20876 0.91498 0.83428 1.04977 1.45601 1.11775 1.04409 1.73471 1.18188 0.87919 0.82611 0.76395 1.90794 1.16905 1.85010 1.51431 1.19421 0.92470 0.93190 1.06092 1.21735 0.91796 1.00996 0.95698 1.17187 0.77968 0.93000 1.03994 1.91590 1.29992 1.95063 1.93847 1.21283 0.95000 0.97117 0.95173 1.19620 0.94661 0.91917 1.10385 1.17916 0.75376 0.86104 0.73986 1.93256 1.95496 1.90828 1.35924 1.93221 1.65909 1.74995 1.81012 1.93230 1.44504 1.96795 1.81078 1.21103 1.01523 0.89864 0.91541 0.91066 0.76617 0.88054 0.88050 0.74593 0.82301 0.80310 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.51 13.05 21.66 0.28 -47.23 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 1.00 40.79 29.55 68.60 2.03 42.81 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.34 -17.95 9.68 84.04 0.81 -17.13 16 8 H 0.09 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.56 -26.82 5.29 -306.98 -1.62 -28.45 16 10 C 0.43 18.75 7.85 87.66 0.69 19.44 16 11 O -0.62 -30.46 15.24 -3.08 -0.05 -30.50 16 12 C 0.12 3.97 6.15 85.63 0.53 4.50 16 13 N -0.70 -20.57 5.48 -469.69 -2.57 -23.15 16 14 C 0.56 15.61 7.77 86.79 0.67 16.28 16 15 O -0.56 -18.63 16.35 -3.90 -0.06 -18.70 16 16 C -0.11 -2.31 5.87 -20.09 -0.12 -2.43 16 17 C -0.08 -1.51 9.52 22.58 0.21 -1.30 16 18 C 0.10 1.57 7.29 22.34 0.16 1.73 16 19 F -0.13 -2.20 17.26 44.97 0.78 -1.42 16 20 C -0.07 -0.89 9.37 22.37 0.21 -0.68 16 21 C -0.16 -2.55 5.45 -19.91 -0.11 -2.66 16 22 C 0.52 7.96 3.36 71.24 0.24 8.20 16 23 F -0.17 -2.85 17.30 44.97 0.78 -2.07 16 24 F -0.17 -2.44 16.45 44.97 0.74 -1.70 16 25 F -0.17 -3.03 16.45 44.97 0.74 -2.29 16 26 C -0.02 -0.40 8.94 22.53 0.20 -0.20 16 27 H 0.28 13.61 8.31 -92.70 -0.77 12.84 16 28 H 0.40 18.41 7.90 -92.70 -0.73 17.68 16 29 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.41 11.80 5.47 -92.71 -0.51 11.30 16 32 H 0.16 2.76 6.40 -2.91 -0.02 2.74 16 33 H 0.18 1.48 7.59 -2.91 -0.02 1.46 16 34 H 0.16 3.01 7.19 -2.91 -0.02 2.99 16 Total: -1.00 -62.18 326.81 5.00 -57.19 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -0.01 Total: 29.78 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 3.97 Total: 25.72 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -3.91 Total: -98.82 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.11 Total: -49.20 kcal Atomic # 9 Polarization: -10.52 SS G_CDS: 3.03 Total: -7.48 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -62.18 5.00 -57.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343509710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.745 kcal (2) G-P(sol) polarization free energy of solvation -62.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds