Wall clock time and date at job start Tue Mar 31 2020 19:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 120.00068 * 2 1 4 4 H 1.48506 * 109.46631 * 269.99665 * 3 2 1 5 5 H 1.48497 * 109.46931 * 29.99505 * 3 2 1 6 6 H 1.48497 * 109.46975 * 150.00109 * 3 2 1 7 7 C 1.38732 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99669 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.76202 * 100.00076 * 185.11747 * 9 7 2 11 11 C 1.39229 * 120.01645 * 85.47957 * 10 9 7 12 12 C 1.38139 * 120.19705 * 180.02562 * 11 10 9 13 13 C 1.38077 * 120.24715 * 0.02562 * 12 11 10 14 14 C 1.39632 * 120.03761 * 359.97438 * 13 12 11 15 15 C 1.47868 * 120.10187 * 179.97438 * 14 13 12 16 16 O 1.21551 * 119.99960 * 180.02562 * 15 14 13 17 17 N 1.34778 * 120.00103 * 0.02562 * 15 14 13 18 18 C 1.46498 * 120.00184 * 180.02562 * 17 15 14 19 19 H 1.08998 * 109.51999 * 324.87994 * 18 17 15 20 20 C 1.53239 * 109.52349 * 204.68486 * 18 17 15 21 21 C 1.53265 * 108.55702 * 295.72264 * 20 18 17 22 22 C 1.50592 * 109.16048 * 304.37854 * 21 20 18 23 23 O 1.21226 * 119.36079 * 209.08959 * 22 21 20 24 24 N 1.34147 * 121.27852 * 29.10267 * 22 21 20 25 25 C 1.34144 * 122.58596 * 359.43912 * 24 22 21 26 26 O 1.21224 * 119.35386 * 180.53728 * 25 24 22 27 27 C 1.38832 * 120.02354 * 265.50792 * 10 9 7 28 28 H 0.97003 * 120.00126 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.90032 * 359.74760 * 11 10 9 30 30 H 1.08003 * 119.87652 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.98522 * 179.97438 * 13 12 11 32 32 H 0.97003 * 119.99747 * 0.02562 * 17 15 14 33 33 H 1.08994 * 109.62200 * 55.43249 * 20 18 17 34 34 H 1.08996 * 109.62071 * 175.98979 * 20 18 17 35 35 H 1.09003 * 109.53237 * 184.46687 * 21 20 18 36 36 H 1.09004 * 109.57695 * 64.30494 * 21 20 18 37 37 H 0.96992 * 118.70591 * 179.46012 * 24 22 21 38 38 H 1.07998 * 120.11656 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0098 -1.2015 0.0005 8 1 3.0898 -1.2015 0.0010 9 16 1.1288 -2.7274 0.0019 10 6 2.4726 -3.8564 0.1569 11 6 2.9724 -4.1755 1.4166 12 6 4.0262 -5.0599 1.5424 13 6 4.5912 -5.6328 0.4203 14 6 4.0978 -5.3199 -0.8479 15 6 4.7021 -5.9322 -2.0505 16 8 4.2715 -5.6582 -3.1537 17 7 5.7305 -6.7942 -1.9236 18 6 6.3296 -7.4004 -3.1151 19 1 5.5550 -7.5811 -3.8604 20 6 6.9959 -8.7269 -2.7348 21 6 8.1520 -8.4337 -1.7723 22 6 9.0919 -7.4478 -2.4145 23 8 10.2679 -7.4698 -2.1210 24 7 8.6530 -6.5455 -3.3049 25 6 7.3685 -6.4707 -3.6844 26 8 7.0377 -5.6382 -4.5011 27 6 3.0340 -4.4280 -0.9769 28 1 -0.4850 0.8401 -0.0004 29 1 2.5380 -3.7269 2.2977 30 1 4.4101 -5.3034 2.5221 31 1 5.4152 -6.3233 0.5236 32 1 6.0739 -7.0131 -1.0432 33 1 6.2684 -9.3750 -2.2462 34 1 7.3800 -9.2137 -3.6312 35 1 8.6872 -9.3578 -1.5534 36 1 7.7590 -8.0125 -0.8470 37 1 9.2895 -5.9229 -3.6896 38 1 2.6483 -4.1822 -1.9553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344248432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:42 Heat of formation + Delta-G solvation = -81.725056 kcal Electronic energy + Delta-G solvation = -25259.472365 eV Core-core repulsion = 21385.987360 eV Total energy + Delta-G solvation = -3873.485006 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.06017 -40.07934 -39.14272 -37.95764 -36.52094 -34.89438 -33.00384 -32.53612 -31.00407 -30.61117 -28.44974 -25.59993 -24.50436 -23.96224 -23.35818 -22.33693 -20.87106 -19.75295 -18.49329 -18.03666 -17.75502 -17.44369 -16.82525 -16.16097 -15.94156 -15.63629 -15.30186 -15.00742 -14.87496 -14.63622 -14.47230 -14.25607 -14.01034 -13.56932 -13.48771 -13.39949 -12.99386 -12.40673 -12.20798 -12.01361 -11.70073 -11.22962 -11.19191 -11.10633 -11.05958 -10.75269 -10.74820 -10.62269 -10.09861 -9.91430 -9.55790 -9.19130 -9.08780 -8.70358 -8.09563 -6.75341 -6.31538 -4.05937 0.99066 1.05656 1.56979 2.15968 2.31844 2.85409 2.91179 3.18145 3.19576 3.26313 3.42015 3.43556 3.82593 3.94953 4.02118 4.06895 4.20952 4.38145 4.61725 4.94074 4.96523 4.98556 5.05209 5.06648 5.13460 5.18569 5.43631 5.59244 5.64507 5.77196 5.84325 5.90584 6.14990 6.37338 6.45237 6.54349 6.84030 6.93576 7.05821 7.14997 7.40079 7.54749 8.01712 8.29659 9.14503 10.75253 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.002754 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.122137 B =10165.132027 C =10623.628049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.521 4.521 8 H 0.076 0.924 9 S -0.033 6.033 10 C -0.105 4.105 11 C -0.051 4.051 12 C -0.140 4.140 13 C -0.090 4.090 14 C -0.156 4.156 15 C 0.564 3.436 16 O -0.508 6.508 17 N -0.725 5.725 18 C 0.133 3.867 19 H 0.137 0.863 20 C -0.135 4.135 21 C -0.146 4.146 22 C 0.525 3.475 23 O -0.504 6.504 24 N -0.674 5.674 25 C 0.505 3.495 26 O -0.468 6.468 27 C -0.017 4.017 28 H 0.270 0.730 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.403 0.597 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.412 0.588 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.821 -20.498 -0.224 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.669 4.669 8 H 0.094 0.906 9 S 0.202 5.798 10 C -0.216 4.216 11 C -0.072 4.072 12 C -0.160 4.160 13 C -0.109 4.109 14 C -0.160 4.160 15 C 0.353 3.647 16 O -0.382 6.382 17 N -0.383 5.383 18 C 0.024 3.976 19 H 0.155 0.845 20 C -0.172 4.172 21 C -0.186 4.186 22 C 0.313 3.687 23 O -0.377 6.377 24 N -0.340 5.340 25 C 0.290 3.710 26 O -0.335 6.335 27 C -0.038 4.038 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.133 0.867 32 H 0.240 0.760 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.252 0.748 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.405 -20.022 -1.339 24.132 hybrid contribution 2.461 1.471 0.443 2.902 sum 15.866 -18.550 -0.895 24.427 Atomic orbital electron populations 1.69981 1.05901 1.27728 1.46913 1.24996 0.95124 0.99111 0.94276 0.86121 0.79415 0.81191 0.78602 1.20067 1.20641 1.19601 1.22831 0.94871 0.90154 1.59008 0.90624 1.83634 1.03899 0.97113 1.95197 1.22879 1.02933 1.01894 0.93895 1.22047 0.93705 0.93737 0.97758 1.21074 0.97819 0.98943 0.98139 1.21094 0.98803 0.99078 0.91937 1.19728 1.00975 1.03299 0.92048 1.18560 0.78758 0.77842 0.89534 1.90852 1.60952 1.59479 1.26923 1.45861 1.35867 1.48248 1.08338 1.21177 0.94684 0.90674 0.91071 0.84536 1.22138 0.97682 0.96130 1.01292 1.21980 0.96440 1.00073 1.00098 1.20943 0.89383 0.80719 0.77631 1.90809 1.17743 1.70110 1.59006 1.44960 1.11992 1.35063 1.42000 1.21556 0.82762 0.85265 0.81460 1.90867 1.79207 1.33810 1.29594 1.21936 0.91215 0.91042 0.99655 0.92011 0.84952 0.85737 0.86652 0.75952 0.87424 0.88391 0.86005 0.87209 0.74817 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.24 13.22 55.49 0.73 -24.51 16 2 C 0.07 2.06 5.49 -17.46 -0.10 1.97 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -14.57 9.46 30.92 0.29 -14.28 16 8 H 0.08 2.10 7.79 -52.48 -0.41 1.69 16 9 S -0.03 -0.84 21.41 -107.50 -2.30 -3.14 16 10 C -0.11 -2.17 5.45 -38.99 -0.21 -2.38 16 11 C -0.05 -0.89 9.79 -39.25 -0.38 -1.27 16 12 C -0.14 -1.85 10.02 -39.68 -0.40 -2.25 16 13 C -0.09 -1.09 9.54 -39.12 -0.37 -1.46 16 14 C -0.16 -2.39 5.87 -105.00 -0.62 -3.00 16 15 C 0.56 8.08 7.73 -12.32 -0.10 7.98 16 16 O -0.51 -9.36 16.01 5.32 0.09 -9.27 16 17 N -0.72 -6.44 4.94 -55.80 -0.28 -6.72 16 18 C 0.13 1.01 2.75 -69.01 -0.19 0.82 16 19 H 0.14 1.19 7.58 -51.93 -0.39 0.80 16 20 C -0.13 -0.38 5.73 -26.47 -0.15 -0.53 16 21 C -0.15 -0.46 5.88 -27.80 -0.16 -0.62 16 22 C 0.52 3.82 7.74 -11.32 -0.09 3.73 16 23 O -0.50 -5.43 17.88 5.60 0.10 -5.33 16 24 N -0.67 -5.53 5.09 -11.75 -0.06 -5.59 16 25 C 0.51 5.19 7.29 -11.32 -0.08 5.11 16 26 O -0.47 -7.12 17.87 5.61 0.10 -7.02 16 27 C -0.02 -0.32 9.34 -38.92 -0.36 -0.69 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 30 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.12 0.85 6.40 -52.48 -0.34 0.52 16 32 H 0.40 2.29 5.18 -40.82 -0.21 2.08 16 33 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.12 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.11 0.19 6.81 -51.93 -0.35 -0.16 16 37 H 0.41 3.33 8.79 -40.82 -0.36 2.97 16 38 H 0.14 2.91 7.65 -52.49 -0.40 2.51 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -37.29 348.43 -8.02 -45.32 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -3.71 Total: 1.54 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.92 Total: -6.88 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.40 Total: -36.82 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.29 Total: -21.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.30 Total: -3.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.29 -8.02 -45.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344248432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.406 kcal (2) G-P(sol) polarization free energy of solvation -37.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds