Wall clock time and date at job start Tue Mar 31 2020 19:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 120.00068 * 2 1 4 4 H 1.48506 * 109.46631 * 269.99665 * 3 2 1 5 5 H 1.48497 * 109.46931 * 29.99505 * 3 2 1 6 6 H 1.48497 * 109.46975 * 150.00109 * 3 2 1 7 7 C 1.38732 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99669 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.76202 * 100.00076 * 185.11747 * 9 7 2 11 11 C 1.39229 * 120.01645 * 85.47957 * 10 9 7 12 12 C 1.38139 * 120.19705 * 180.02562 * 11 10 9 13 13 C 1.38077 * 120.24715 * 0.02562 * 12 11 10 14 14 C 1.39632 * 120.03761 * 359.97438 * 13 12 11 15 15 C 1.47868 * 120.10187 * 179.97438 * 14 13 12 16 16 O 1.21551 * 119.99960 * 180.02562 * 15 14 13 17 17 N 1.34778 * 120.00103 * 0.02562 * 15 14 13 18 18 C 1.46498 * 120.00184 * 180.02562 * 17 15 14 19 19 H 1.08998 * 109.51999 * 324.87994 * 18 17 15 20 20 C 1.53239 * 109.52349 * 204.68486 * 18 17 15 21 21 C 1.53265 * 108.55702 * 295.72264 * 20 18 17 22 22 C 1.50592 * 109.16048 * 304.37854 * 21 20 18 23 23 O 1.21226 * 119.36079 * 209.08959 * 22 21 20 24 24 N 1.34147 * 121.27852 * 29.10267 * 22 21 20 25 25 C 1.34144 * 122.58596 * 359.43912 * 24 22 21 26 26 O 1.21224 * 119.35386 * 180.53728 * 25 24 22 27 27 C 1.38832 * 120.02354 * 265.50792 * 10 9 7 28 28 H 0.97003 * 120.00126 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.90032 * 359.74760 * 11 10 9 30 30 H 1.08003 * 119.87652 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.98522 * 179.97438 * 13 12 11 32 32 H 0.97003 * 119.99747 * 0.02562 * 17 15 14 33 33 H 1.08994 * 109.62200 * 55.43249 * 20 18 17 34 34 H 1.08996 * 109.62071 * 175.98979 * 20 18 17 35 35 H 1.09003 * 109.53237 * 184.46687 * 21 20 18 36 36 H 1.09004 * 109.57695 * 64.30494 * 21 20 18 37 37 H 0.96992 * 118.70591 * 179.46012 * 24 22 21 38 38 H 1.07998 * 120.11656 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0098 -1.2015 0.0005 8 1 3.0898 -1.2015 0.0010 9 16 1.1288 -2.7274 0.0019 10 6 2.4726 -3.8564 0.1569 11 6 2.9724 -4.1755 1.4166 12 6 4.0262 -5.0599 1.5424 13 6 4.5912 -5.6328 0.4203 14 6 4.0978 -5.3199 -0.8479 15 6 4.7021 -5.9322 -2.0505 16 8 4.2715 -5.6582 -3.1537 17 7 5.7305 -6.7942 -1.9236 18 6 6.3296 -7.4004 -3.1151 19 1 5.5550 -7.5811 -3.8604 20 6 6.9959 -8.7269 -2.7348 21 6 8.1520 -8.4337 -1.7723 22 6 9.0919 -7.4478 -2.4145 23 8 10.2679 -7.4698 -2.1210 24 7 8.6530 -6.5455 -3.3049 25 6 7.3685 -6.4707 -3.6844 26 8 7.0377 -5.6382 -4.5011 27 6 3.0340 -4.4280 -0.9769 28 1 -0.4850 0.8401 -0.0004 29 1 2.5380 -3.7269 2.2977 30 1 4.4101 -5.3034 2.5221 31 1 5.4152 -6.3233 0.5236 32 1 6.0739 -7.0131 -1.0432 33 1 6.2684 -9.3750 -2.2462 34 1 7.3800 -9.2137 -3.6312 35 1 8.6872 -9.3578 -1.5534 36 1 7.7590 -8.0125 -0.8470 37 1 9.2895 -5.9229 -3.6896 38 1 2.6483 -4.1822 -1.9553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344248432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:41 Heat of formation + Delta-G solvation = -111.529226 kcal Electronic energy + Delta-G solvation = -25260.764771 eV Core-core repulsion = 21385.987360 eV Total energy + Delta-G solvation = -3874.777411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.77273 -41.14117 -40.00023 -39.15450 -37.31929 -35.70852 -34.66840 -33.73778 -32.11755 -31.85164 -29.14002 -27.75678 -25.24320 -24.76852 -24.15515 -23.58242 -21.97059 -20.43545 -20.01385 -19.01558 -18.80238 -18.40500 -17.62827 -17.12774 -16.94868 -16.87229 -16.65118 -16.47132 -15.76372 -15.61940 -15.52759 -15.35701 -14.94568 -14.73015 -14.61962 -14.36429 -13.84306 -13.83885 -13.26996 -13.10436 -12.99922 -12.67557 -12.51096 -12.41448 -12.33439 -11.88485 -11.75727 -11.42967 -11.35125 -11.28007 -11.20585 -10.76797 -10.47130 -9.94953 -9.70603 -8.82165 -8.40811 -6.20656 -0.21387 0.25058 0.30242 1.28398 1.35537 1.44206 1.45130 1.58316 1.69320 1.83681 2.08958 2.23089 2.75987 2.89642 2.92192 3.40409 3.42206 3.50245 3.60611 3.73240 3.94115 4.01337 4.22170 4.34913 4.43343 4.48818 4.67216 4.70929 4.86766 4.90384 4.92181 5.07975 5.09440 5.19234 5.31916 5.37052 5.51289 5.72255 5.85729 6.14030 6.27035 6.29907 6.70791 6.99690 7.00970 8.66337 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.002754 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.122137 B =10165.132027 C =10623.628049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.066 0.934 9 S -0.098 6.098 10 C -0.129 4.129 11 C -0.063 4.063 12 C -0.120 4.120 13 C -0.058 4.058 14 C -0.157 4.157 15 C 0.564 3.436 16 O -0.560 6.560 17 N -0.696 5.696 18 C 0.131 3.869 19 H 0.123 0.877 20 C -0.119 4.119 21 C -0.140 4.140 22 C 0.525 3.475 23 O -0.539 6.539 24 N -0.672 5.672 25 C 0.509 3.491 26 O -0.529 6.529 27 C -0.045 4.045 28 H 0.274 0.726 29 H 0.129 0.871 30 H 0.177 0.823 31 H 0.183 0.817 32 H 0.424 0.576 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.408 0.592 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.083 -23.595 2.310 29.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.684 4.684 8 H 0.084 0.916 9 S 0.137 5.863 10 C -0.240 4.240 11 C -0.084 4.084 12 C -0.140 4.140 13 C -0.077 4.077 14 C -0.162 4.162 15 C 0.353 3.647 16 O -0.438 6.438 17 N -0.355 5.355 18 C 0.023 3.977 19 H 0.141 0.859 20 C -0.156 4.156 21 C -0.179 4.179 22 C 0.317 3.683 23 O -0.414 6.414 24 N -0.336 5.336 25 C 0.296 3.704 26 O -0.400 6.400 27 C -0.066 4.066 28 H 0.083 0.917 29 H 0.147 0.853 30 H 0.195 0.805 31 H 0.200 0.800 32 H 0.265 0.735 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.247 0.753 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.708 -23.188 1.252 28.608 hybrid contribution 1.608 2.250 -0.371 2.790 sum 18.316 -20.938 0.881 27.832 Atomic orbital electron populations 1.70101 1.07468 1.28804 1.47802 1.25978 0.96041 1.02779 0.93642 0.85072 0.78352 0.76632 0.78722 1.19817 1.19234 1.18719 1.23048 0.94568 0.91665 1.59090 0.91584 1.83510 1.08476 0.98590 1.95748 1.22469 1.02969 1.02484 0.96105 1.22105 0.95233 0.95172 0.95883 1.21578 0.95257 0.96232 1.00901 1.21759 0.98679 0.97764 0.89464 1.19865 0.99670 1.02289 0.94387 1.18486 0.79655 0.78280 0.88286 1.90846 1.62873 1.61386 1.28673 1.45524 1.33759 1.46189 1.09986 1.21378 0.93824 0.92238 0.90270 0.85877 1.22207 0.97864 0.93127 1.02416 1.22174 0.95478 0.99881 1.00344 1.21860 0.89586 0.80385 0.76497 1.90807 1.19647 1.70990 1.60004 1.45058 1.11328 1.35232 1.42014 1.22095 0.83531 0.84438 0.80326 1.90853 1.80235 1.36439 1.32512 1.21628 0.93666 0.93641 0.97715 0.91668 0.85295 0.80548 0.80025 0.73469 0.83931 0.86884 0.83272 0.84543 0.75338 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.67 13.22 21.64 0.29 -54.38 16 2 C 0.02 1.21 5.49 84.84 0.47 1.67 16 3 Si 0.99 44.83 29.55 68.60 2.03 46.86 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -31.55 9.46 67.94 0.64 -30.91 16 8 H 0.07 3.85 7.79 -2.91 -0.02 3.83 16 9 S -0.10 -5.34 21.41 -56.49 -1.21 -6.55 16 10 C -0.13 -5.55 5.45 22.65 0.12 -5.43 16 11 C -0.06 -2.11 9.79 22.48 0.22 -1.89 16 12 C -0.12 -2.58 10.02 22.21 0.22 -2.36 16 13 C -0.06 -1.09 9.54 22.57 0.22 -0.87 16 14 C -0.16 -4.56 5.87 -20.11 -0.12 -4.68 16 15 C 0.56 15.43 7.73 86.79 0.67 16.10 16 16 O -0.56 -21.43 16.01 -3.88 -0.06 -21.50 16 17 N -0.70 -9.67 4.94 -448.74 -2.22 -11.89 16 18 C 0.13 1.63 2.75 44.29 0.12 1.76 16 19 H 0.12 2.00 7.58 -2.39 -0.02 1.98 16 20 C -0.12 -0.02 5.73 30.76 0.18 0.16 16 21 C -0.14 -0.04 5.88 29.90 0.18 0.14 16 22 C 0.53 5.89 7.74 87.72 0.68 6.57 16 23 O -0.54 -10.26 17.88 -2.86 -0.05 -10.31 16 24 N -0.67 -10.00 5.09 -428.62 -2.18 -12.18 16 25 C 0.51 9.98 7.29 87.72 0.64 10.62 16 26 O -0.53 -16.75 17.87 -2.86 -0.05 -16.80 16 27 C -0.04 -1.81 9.34 22.70 0.21 -1.59 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.18 1.00 6.40 -2.91 -0.02 0.98 16 32 H 0.42 1.96 5.18 -92.71 -0.48 1.48 16 33 H 0.14 -0.76 8.14 -2.39 -0.02 -0.78 16 34 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.15 -0.56 8.14 -2.39 -0.02 -0.57 16 36 H 0.14 -0.61 6.81 -2.38 -0.02 -0.62 16 37 H 0.41 6.51 8.79 -92.71 -0.81 5.70 16 38 H 0.10 4.83 7.65 -2.91 -0.02 4.81 16 Total: -1.00 -93.68 348.43 0.84 -92.84 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -0.15 Total: 4.65 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 4.45 Total: -10.73 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -4.12 Total: -78.46 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.16 Total: -48.61 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.21 Total: -6.55 kcal Total: -93.68 0.84 -92.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344248432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.690 kcal (2) G-P(sol) polarization free energy of solvation -93.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds