Wall clock time and date at job start Tue Mar 31 2020 19:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99967 * 2 1 4 4 H 1.48496 * 109.47419 * 270.00472 * 3 2 1 5 5 H 1.48499 * 109.47172 * 30.00847 * 3 2 1 6 6 H 1.48504 * 109.46868 * 150.00139 * 3 2 1 7 7 C 1.38729 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00079 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00099 * 179.97438 * 7 2 1 10 10 C 1.76192 * 99.99821 * 185.11405 * 9 7 2 11 11 C 1.39222 * 120.02350 * 85.50471 * 10 9 7 12 12 C 1.38133 * 120.20763 * 179.72237 * 11 10 9 13 13 C 1.38080 * 120.24055 * 359.97387 * 12 11 10 14 14 C 1.39633 * 120.04219 * 0.02562 * 13 12 11 15 15 C 1.47860 * 120.10402 * 180.02562 * 14 13 12 16 16 O 1.21552 * 119.99826 * 179.97438 * 15 14 13 17 17 N 1.34775 * 119.99963 * 359.97438 * 15 14 13 18 18 C 1.46507 * 119.99858 * 180.02562 * 17 15 14 19 19 H 1.08990 * 109.52407 * 35.12764 * 18 17 15 20 20 C 1.53242 * 109.52175 * 155.32015 * 18 17 15 21 21 C 1.53216 * 108.58243 * 175.50700 * 20 18 17 22 22 C 1.50583 * 109.17853 * 304.43018 * 21 20 18 23 23 O 1.21237 * 119.35860 * 209.05873 * 22 21 20 24 24 N 1.34140 * 121.28690 * 29.03722 * 22 21 20 25 25 C 1.34144 * 122.58272 * 359.48335 * 24 22 21 26 26 O 1.21229 * 119.36114 * 180.54507 * 25 24 22 27 27 C 1.38836 * 120.02194 * 265.22213 * 10 9 7 28 28 H 0.97001 * 119.99929 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.89550 * 359.74372 * 11 10 9 30 30 H 1.08002 * 119.87924 * 179.97438 * 12 11 10 31 31 H 1.08007 * 119.98229 * 180.02562 * 13 12 11 32 32 H 0.97000 * 120.00163 * 0.02562 * 17 15 14 33 33 H 1.09003 * 109.61589 * 295.24393 * 20 18 17 34 34 H 1.09004 * 109.62247 * 55.79044 * 20 18 17 35 35 H 1.09000 * 109.54099 * 184.49813 * 21 20 18 36 36 H 1.09003 * 109.53771 * 64.35136 * 21 20 18 37 37 H 0.96994 * 118.71301 * 179.49374 * 24 22 21 38 38 H 1.08003 * 120.11799 * 0.25978 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0099 -1.2014 -0.0005 8 1 1.4699 -2.1368 -0.0005 9 16 3.7719 -1.2015 -0.0012 10 6 4.0777 -2.9298 -0.1564 11 6 4.1051 -3.5220 -1.4161 12 6 4.3501 -4.8755 -1.5425 13 6 4.5701 -5.6502 -0.4208 14 6 4.5449 -5.0668 0.8475 15 6 4.7808 -5.8949 2.0495 16 8 4.7590 -5.3850 3.1527 17 7 5.0201 -7.2151 1.9219 18 6 5.2533 -8.0358 3.1130 19 1 4.6366 -7.6700 3.9338 20 6 4.8918 -9.4936 2.8092 21 6 5.2489 -10.3495 4.0288 22 6 6.7017 -10.1450 4.3683 23 8 7.3203 -11.0430 4.8982 24 7 7.3248 -8.9889 4.0955 25 6 6.7061 -7.9575 3.5015 26 8 7.3285 -6.9425 3.2733 27 6 4.2973 -3.7009 0.9771 28 1 -0.4850 0.8401 0.0004 29 1 3.9345 -2.9212 -2.2972 30 1 4.3697 -5.3295 -2.5223 31 1 4.7617 -6.7080 -0.5246 32 1 5.0379 -7.6220 1.0416 33 1 3.8233 -9.5713 2.6076 34 1 5.4564 -9.8379 1.9427 35 1 5.0725 -11.4007 3.8007 36 1 4.6314 -10.0521 4.8763 37 1 8.2594 -8.8950 4.3371 38 1 4.2770 -3.2441 1.9555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344248438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:47 Heat of formation + Delta-G solvation = -80.795104 kcal Electronic energy + Delta-G solvation = -24989.132196 eV Core-core repulsion = 21115.687516 eV Total energy + Delta-G solvation = -3873.444680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.00178 -40.13038 -39.12451 -37.92933 -36.35018 -35.06330 -33.13869 -32.52042 -31.05791 -30.65829 -28.19593 -25.70190 -24.52352 -24.11183 -23.16183 -22.35230 -20.69189 -20.09030 -18.41655 -18.15820 -17.73201 -17.39116 -17.00500 -16.16053 -15.86700 -15.45964 -15.29196 -15.00285 -14.99194 -14.96099 -14.47355 -14.32818 -13.90275 -13.50391 -13.48366 -12.98827 -12.89831 -12.69283 -12.44856 -12.02721 -11.84888 -11.39265 -11.24671 -11.10277 -11.00442 -10.75373 -10.67619 -10.64699 -10.05982 -9.89659 -9.51677 -9.24577 -9.10090 -8.71083 -8.19156 -7.15760 -6.35218 -4.10673 1.02601 1.06574 1.54482 2.17097 2.28069 2.78109 2.89650 2.95209 3.24365 3.38465 3.41621 3.48532 3.83425 3.97825 4.05027 4.15352 4.24480 4.42127 4.58635 4.83357 4.87511 4.96674 4.99404 5.04030 5.06551 5.12072 5.23775 5.56924 5.61611 5.73439 5.83982 5.90949 6.13049 6.37476 6.43739 6.52472 6.78405 6.92562 7.04531 7.20311 7.38755 7.88995 8.08083 8.41822 9.08797 10.74142 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.002373 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.053726 B =11797.178499 C =11965.052492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.238 1.238 7 C -0.509 4.509 8 H 0.091 0.909 9 S -0.111 6.111 10 C -0.085 4.085 11 C -0.050 4.050 12 C -0.139 4.139 13 C -0.085 4.085 14 C -0.151 4.151 15 C 0.575 3.425 16 O -0.519 6.519 17 N -0.718 5.718 18 C 0.132 3.868 19 H 0.134 0.866 20 C -0.132 4.132 21 C -0.139 4.139 22 C 0.524 3.476 23 O -0.506 6.506 24 N -0.674 5.674 25 C 0.502 3.498 26 O -0.470 6.470 27 C -0.014 4.014 28 H 0.272 0.728 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.406 0.594 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.412 0.588 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 -22.305 2.104 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.163 1.163 7 C -0.656 4.656 8 H 0.109 0.891 9 S 0.123 5.877 10 C -0.195 4.195 11 C -0.071 4.071 12 C -0.159 4.159 13 C -0.104 4.104 14 C -0.156 4.156 15 C 0.364 3.636 16 O -0.394 6.394 17 N -0.372 5.372 18 C 0.022 3.978 19 H 0.152 0.848 20 C -0.170 4.170 21 C -0.179 4.179 22 C 0.313 3.687 23 O -0.378 6.378 24 N -0.341 5.341 25 C 0.288 3.712 26 O -0.339 6.339 27 C -0.035 4.035 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.243 0.757 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.252 0.748 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.622 -20.779 3.083 23.539 hybrid contribution -0.212 -0.433 -0.455 0.663 sum 10.410 -21.212 2.628 23.774 Atomic orbital electron populations 1.69925 1.05848 1.27825 1.47631 1.24736 0.94516 0.98849 0.93289 0.86739 0.81725 0.83497 0.79864 1.19085 1.19760 1.16262 1.22239 0.86714 0.97699 1.58946 0.89060 1.83129 1.11231 0.97554 1.95833 1.22190 1.02179 1.00986 0.94168 1.21982 0.93102 0.94423 0.97556 1.21056 1.02410 0.94140 0.98279 1.21151 0.98447 0.98888 0.91875 1.19691 1.09019 0.94648 0.92255 1.18361 0.74957 0.81000 0.89306 1.90787 1.49635 1.71838 1.27162 1.45578 1.74600 1.08615 1.08427 1.20923 0.91626 0.92699 0.92529 0.84811 1.22044 1.05280 0.91031 0.98637 1.21895 0.91460 1.04144 1.00363 1.21008 0.90484 0.80811 0.76444 1.90810 1.67101 1.40610 1.39321 1.44956 1.17022 1.15184 1.56945 1.21617 0.90947 0.82341 0.76337 1.90850 1.66050 1.28502 1.48477 1.21839 0.91107 0.91106 0.99496 0.91798 0.84859 0.85559 0.86352 0.75740 0.87398 0.89534 0.85989 0.86400 0.74818 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.97 55.49 0.78 -25.18 16 2 C 0.10 2.70 5.50 -17.46 -0.10 2.61 16 3 Si 0.86 20.82 27.73 -169.99 -4.71 16.10 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.24 -5.68 6.74 56.52 0.38 -5.30 16 7 C -0.51 -14.38 10.01 30.91 0.31 -14.07 16 8 H 0.09 2.79 8.02 -52.49 -0.42 2.37 16 9 S -0.11 -2.68 19.38 -107.50 -2.08 -4.76 16 10 C -0.08 -1.73 5.45 -38.99 -0.21 -1.94 16 11 C -0.05 -0.85 9.79 -39.25 -0.38 -1.24 16 12 C -0.14 -1.86 10.02 -39.68 -0.40 -2.25 16 13 C -0.08 -1.05 9.54 -39.12 -0.37 -1.42 16 14 C -0.15 -2.37 5.87 -105.00 -0.62 -2.98 16 15 C 0.57 8.44 7.19 -12.32 -0.09 8.35 16 16 O -0.52 -9.55 15.90 5.32 0.08 -9.47 16 17 N -0.72 -6.71 4.84 -55.80 -0.27 -6.98 16 18 C 0.13 0.97 2.70 -69.01 -0.19 0.79 16 19 H 0.13 1.05 7.58 -51.93 -0.39 0.66 16 20 C -0.13 -0.37 5.56 -26.49 -0.15 -0.51 16 21 C -0.14 -0.40 6.07 -27.83 -0.17 -0.56 16 22 C 0.52 3.52 7.74 -11.33 -0.09 3.43 16 23 O -0.51 -5.18 17.88 5.59 0.10 -5.08 16 24 N -0.67 -5.03 5.09 -11.75 -0.06 -5.09 16 25 C 0.50 4.83 7.56 -11.32 -0.09 4.75 16 26 O -0.47 -6.79 16.86 5.60 0.09 -6.70 16 27 C -0.01 -0.27 9.34 -38.92 -0.36 -0.63 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 0.93 6.40 -52.48 -0.34 0.59 16 32 H 0.41 2.54 6.63 -40.82 -0.27 2.27 16 33 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.12 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.41 2.99 8.79 -40.82 -0.36 2.63 16 38 H 0.14 2.91 7.65 -52.48 -0.40 2.50 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -37.55 346.99 -7.62 -45.17 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.87 Total: 2.45 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.90 Total: -5.69 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.45 Total: -37.26 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.28 Total: -21.24 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.10 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.08 Total: -4.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.55 -7.62 -45.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344248438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.625 kcal (2) G-P(sol) polarization free energy of solvation -37.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds