Wall clock time and date at job start Tue Mar 31 2020 19:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99967 * 2 1 4 4 H 1.48496 * 109.47419 * 270.00472 * 3 2 1 5 5 H 1.48499 * 109.47172 * 30.00847 * 3 2 1 6 6 H 1.48504 * 109.46868 * 150.00139 * 3 2 1 7 7 C 1.38729 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00079 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00099 * 179.97438 * 7 2 1 10 10 C 1.76192 * 99.99821 * 185.11405 * 9 7 2 11 11 C 1.39222 * 120.02350 * 85.50471 * 10 9 7 12 12 C 1.38133 * 120.20763 * 179.72237 * 11 10 9 13 13 C 1.38080 * 120.24055 * 359.97387 * 12 11 10 14 14 C 1.39633 * 120.04219 * 0.02562 * 13 12 11 15 15 C 1.47860 * 120.10402 * 180.02562 * 14 13 12 16 16 O 1.21552 * 119.99826 * 179.97438 * 15 14 13 17 17 N 1.34775 * 119.99963 * 359.97438 * 15 14 13 18 18 C 1.46507 * 119.99858 * 180.02562 * 17 15 14 19 19 H 1.08990 * 109.52407 * 35.12764 * 18 17 15 20 20 C 1.53242 * 109.52175 * 155.32015 * 18 17 15 21 21 C 1.53216 * 108.58243 * 175.50700 * 20 18 17 22 22 C 1.50583 * 109.17853 * 304.43018 * 21 20 18 23 23 O 1.21237 * 119.35860 * 209.05873 * 22 21 20 24 24 N 1.34140 * 121.28690 * 29.03722 * 22 21 20 25 25 C 1.34144 * 122.58272 * 359.48335 * 24 22 21 26 26 O 1.21229 * 119.36114 * 180.54507 * 25 24 22 27 27 C 1.38836 * 120.02194 * 265.22213 * 10 9 7 28 28 H 0.97001 * 119.99929 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.89550 * 359.74372 * 11 10 9 30 30 H 1.08002 * 119.87924 * 179.97438 * 12 11 10 31 31 H 1.08007 * 119.98229 * 180.02562 * 13 12 11 32 32 H 0.97000 * 120.00163 * 0.02562 * 17 15 14 33 33 H 1.09003 * 109.61589 * 295.24393 * 20 18 17 34 34 H 1.09004 * 109.62247 * 55.79044 * 20 18 17 35 35 H 1.09000 * 109.54099 * 184.49813 * 21 20 18 36 36 H 1.09003 * 109.53771 * 64.35136 * 21 20 18 37 37 H 0.96994 * 118.71301 * 179.49374 * 24 22 21 38 38 H 1.08003 * 120.11799 * 0.25978 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0099 -1.2014 -0.0005 8 1 1.4699 -2.1368 -0.0005 9 16 3.7719 -1.2015 -0.0012 10 6 4.0777 -2.9298 -0.1564 11 6 4.1051 -3.5220 -1.4161 12 6 4.3501 -4.8755 -1.5425 13 6 4.5701 -5.6502 -0.4208 14 6 4.5449 -5.0668 0.8475 15 6 4.7808 -5.8949 2.0495 16 8 4.7590 -5.3850 3.1527 17 7 5.0201 -7.2151 1.9219 18 6 5.2533 -8.0358 3.1130 19 1 4.6366 -7.6700 3.9338 20 6 4.8918 -9.4936 2.8092 21 6 5.2489 -10.3495 4.0288 22 6 6.7017 -10.1450 4.3683 23 8 7.3203 -11.0430 4.8982 24 7 7.3248 -8.9889 4.0955 25 6 6.7061 -7.9575 3.5015 26 8 7.3285 -6.9425 3.2733 27 6 4.2973 -3.7009 0.9771 28 1 -0.4850 0.8401 0.0004 29 1 3.9345 -2.9212 -2.2972 30 1 4.3697 -5.3295 -2.5223 31 1 4.7617 -6.7080 -0.5246 32 1 5.0379 -7.6220 1.0416 33 1 3.8233 -9.5713 2.6076 34 1 5.4564 -9.8379 1.9427 35 1 5.0725 -11.4007 3.8007 36 1 4.6314 -10.0521 4.8763 37 1 8.2594 -8.8950 4.3371 38 1 4.2770 -3.2441 1.9555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344248438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:46 Heat of formation + Delta-G solvation = -111.052853 kcal Electronic energy + Delta-G solvation = -24990.444270 eV Core-core repulsion = 21115.687516 eV Total energy + Delta-G solvation = -3874.756754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.68170 -41.16783 -39.98204 -39.11274 -37.08222 -35.87354 -34.71090 -33.83291 -32.18305 -31.91467 -28.90365 -27.90890 -25.16168 -24.94554 -24.05315 -23.54157 -21.79259 -20.74512 -19.99570 -18.91250 -18.82907 -18.38806 -17.80452 -17.17813 -17.12731 -16.84975 -16.56514 -16.21876 -15.82367 -15.64184 -15.48060 -15.34209 -15.14515 -14.94408 -14.70612 -13.97039 -13.92801 -13.63647 -13.45218 -13.11991 -13.08091 -13.05820 -12.67803 -12.29465 -12.16392 -11.87347 -11.78157 -11.40895 -11.34109 -11.28106 -11.17758 -10.93554 -10.43398 -9.95842 -9.74253 -9.15390 -8.53417 -6.27477 -0.21655 0.21410 0.39484 1.06833 1.30146 1.43737 1.46627 1.62031 1.69200 1.85282 2.07521 2.22047 2.59996 2.84248 2.87166 2.99222 3.41598 3.52979 3.64079 3.87670 3.91819 4.02595 4.09357 4.31170 4.40048 4.46088 4.64475 4.72345 4.87243 4.89957 4.96040 5.07036 5.12294 5.18339 5.30557 5.44461 5.69702 5.75007 5.82744 6.10739 6.30981 6.34177 6.72894 6.89345 7.06480 8.59945 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.002373 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.053726 B =11797.178499 C =11965.052492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.042 3.958 3 Si 0.920 3.080 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.049 0.951 9 S -0.124 6.124 10 C -0.119 4.119 11 C -0.061 4.061 12 C -0.122 4.122 13 C -0.056 4.056 14 C -0.157 4.157 15 C 0.572 3.428 16 O -0.568 6.568 17 N -0.693 5.693 18 C 0.127 3.873 19 H 0.130 0.870 20 C -0.117 4.117 21 C -0.130 4.130 22 C 0.526 3.474 23 O -0.542 6.542 24 N -0.671 5.671 25 C 0.508 3.492 26 O -0.527 6.527 27 C -0.041 4.041 28 H 0.278 0.722 29 H 0.134 0.866 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.425 0.575 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.409 0.591 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.225 -25.715 0.380 27.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.163 4.163 3 Si 0.741 3.259 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.159 1.159 7 C -0.667 4.667 8 H 0.067 0.933 9 S 0.110 5.890 10 C -0.230 4.230 11 C -0.082 4.082 12 C -0.142 4.142 13 C -0.074 4.074 14 C -0.162 4.162 15 C 0.361 3.639 16 O -0.447 6.447 17 N -0.348 5.348 18 C 0.019 3.981 19 H 0.147 0.853 20 C -0.155 4.155 21 C -0.170 4.170 22 C 0.317 3.683 23 O -0.417 6.417 24 N -0.336 5.336 25 C 0.296 3.704 26 O -0.400 6.400 27 C -0.063 4.063 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.195 0.805 31 H 0.198 0.802 32 H 0.265 0.735 33 H 0.156 0.844 34 H 0.124 0.876 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.248 0.752 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.165 -24.270 1.332 26.748 hybrid contribution -0.309 0.333 0.127 0.471 sum 10.856 -23.937 1.459 26.324 Atomic orbital electron populations 1.70024 1.07501 1.29156 1.48906 1.25677 0.95405 1.02467 0.92748 0.85791 0.80522 0.78968 0.80629 1.17724 1.18530 1.15880 1.22342 0.89546 0.96245 1.58579 0.93284 1.82737 1.07525 1.02470 1.96243 1.22025 1.06128 0.98565 0.96258 1.22115 0.93483 0.96640 0.95959 1.21574 0.99576 0.92102 1.00899 1.21791 0.94379 1.01617 0.89627 1.19891 1.08519 0.93239 0.94582 1.18307 0.74825 0.82594 0.88153 1.90769 1.51998 1.73170 1.28725 1.45311 1.72384 1.06804 1.10273 1.21252 0.89798 0.95380 0.91718 0.85257 1.22105 1.07406 0.86790 0.99154 1.22036 0.88146 1.05690 1.01119 1.21833 0.91869 0.79519 0.75067 1.90806 1.68303 1.41549 1.41047 1.45000 1.17076 1.15232 1.56256 1.22052 0.91631 0.81563 0.75167 1.90839 1.67481 1.30579 1.51079 1.21612 0.93561 0.93293 0.97828 0.91260 0.84765 0.80524 0.80209 0.73487 0.84390 0.87552 0.83458 0.84593 0.75168 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.39 13.97 21.64 0.30 -56.09 16 2 C 0.04 2.48 5.50 84.84 0.47 2.95 16 3 Si 0.92 43.98 27.73 68.60 1.90 45.88 16 4 H -0.25 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.23 -11.01 6.74 99.48 0.67 -10.34 16 7 C -0.52 -30.98 10.01 67.94 0.68 -30.30 16 8 H 0.05 3.21 8.02 -2.91 -0.02 3.19 16 9 S -0.12 -6.21 19.38 -56.49 -1.09 -7.31 16 10 C -0.12 -5.02 5.45 22.65 0.12 -4.90 16 11 C -0.06 -2.04 9.79 22.48 0.22 -1.82 16 12 C -0.12 -2.74 10.02 22.21 0.22 -2.51 16 13 C -0.06 -1.13 9.54 22.57 0.22 -0.91 16 14 C -0.16 -4.75 5.87 -20.11 -0.12 -4.87 16 15 C 0.57 16.29 7.19 86.79 0.62 16.92 16 16 O -0.57 -21.63 15.90 -3.88 -0.06 -21.69 16 17 N -0.69 -10.74 4.84 -448.75 -2.17 -12.91 16 18 C 0.13 1.53 2.70 44.29 0.12 1.64 16 19 H 0.13 1.79 7.58 -2.39 -0.02 1.78 16 20 C -0.12 -0.05 5.56 30.75 0.17 0.12 16 21 C -0.13 -0.18 6.07 29.88 0.18 0.01 16 22 C 0.53 5.87 7.74 87.72 0.68 6.55 16 23 O -0.54 -10.30 17.88 -2.90 -0.05 -10.35 16 24 N -0.67 -9.26 5.09 -428.62 -2.18 -11.44 16 25 C 0.51 9.20 7.56 87.72 0.66 9.86 16 26 O -0.53 -15.37 16.86 -2.87 -0.05 -15.42 16 27 C -0.04 -1.66 9.34 22.70 0.21 -1.45 16 28 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 30 H 0.18 2.30 8.06 -2.91 -0.02 2.27 16 31 H 0.18 1.42 6.40 -2.91 -0.02 1.40 16 32 H 0.42 2.97 6.63 -92.71 -0.61 2.36 16 33 H 0.14 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.15 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H 0.14 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.41 5.92 8.79 -92.71 -0.81 5.10 16 38 H 0.11 4.96 7.65 -2.91 -0.02 4.93 16 Total: -1.00 -92.22 346.99 0.73 -91.49 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -0.32 Total: 6.56 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.46 Total: -8.72 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -4.05 Total: -80.44 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -0.16 Total: -47.46 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.90 Total: 45.88 kcal Atomic # 16 Polarization: -6.21 SS G_CDS: -1.09 Total: -7.31 kcal Total: -92.22 0.73 -91.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344248438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.568 kcal (2) G-P(sol) polarization free energy of solvation -92.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds