Wall clock time and date at job start Tue Mar 31 2020 18:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48494 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47050 * 300.00056 * 3 2 1 6 6 H 1.48500 * 109.47341 * 59.99615 * 3 2 1 7 7 C 1.38953 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99396 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99729 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00324 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99771 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47114 * 179.97438 * 12 10 9 14 14 C 1.40029 * 120.00044 * 180.02562 * 13 12 10 15 15 C 1.38711 * 120.07757 * 359.97438 * 14 13 12 16 16 C 1.38228 * 119.99335 * 180.02562 * 15 14 13 17 17 C 1.38354 * 120.14709 * 359.97176 * 16 15 14 18 18 Cl 1.73601 * 119.92179 * 180.02562 * 17 16 15 19 19 C 1.38373 * 120.15349 * 359.77591 * 17 16 15 20 20 C 1.38510 * 120.00500 * 0.49886 * 19 17 16 21 21 O 1.36016 * 120.07321 * 179.74418 * 20 19 17 22 22 C 1.42903 * 116.99777 * 359.73368 * 21 20 19 23 23 C 1.53000 * 109.46726 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.47059 * 299.99479 * 23 22 21 25 25 F 1.39895 * 109.47411 * 59.99737 * 23 22 21 26 26 H 0.97003 * 120.00182 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00106 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47142 * 60.00038 * 12 10 9 29 29 H 1.09000 * 109.47288 * 299.99586 * 12 10 9 30 30 H 0.97005 * 119.99811 * 359.97438 * 13 12 10 31 31 H 1.08003 * 120.00581 * 0.04463 * 15 14 13 32 32 H 1.07997 * 119.92745 * 180.02562 * 16 15 14 33 33 H 1.08002 * 119.99850 * 180.25495 * 19 17 16 34 34 H 1.09002 * 109.47382 * 59.99685 * 22 21 20 35 35 H 1.09001 * 109.46938 * 299.99671 * 22 21 20 36 36 H 1.09004 * 109.46724 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8629 0.0011 13 7 2.1956 -5.9765 0.0004 14 6 1.7288 -7.2967 0.0002 15 6 0.3654 -7.5520 0.0013 16 6 -0.0935 -8.8559 0.0016 17 6 0.8044 -9.9085 0.0003 18 17 0.2217 -11.5438 0.0001 19 6 2.1658 -9.6608 -0.0060 20 6 2.6326 -8.3568 -0.0006 21 8 3.9705 -8.1117 -0.0016 22 6 4.8380 -9.2474 -0.0023 23 6 6.2938 -8.7769 -0.0040 24 9 6.5336 -8.0062 -1.1467 25 9 6.5361 -8.0057 1.1378 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3907 0.0005 28 1 0.6166 -4.9208 -0.8886 29 1 0.6173 -4.9205 0.8914 30 1 3.1493 -5.7993 -0.0007 31 1 -0.3376 -6.7321 0.0015 32 1 -1.1552 -9.0534 0.0020 33 1 2.8644 -10.4844 -0.0111 34 1 4.6495 -9.8480 -0.8922 35 1 4.6509 -9.8481 0.8878 36 1 6.9555 -9.6431 -0.0050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345529239.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:54 Heat of formation + Delta-G solvation = -155.791662 kcal Electronic energy + Delta-G solvation = -25552.833107 eV Core-core repulsion = 21119.863097 eV Total energy + Delta-G solvation = -4432.970011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.09633 -47.12971 -40.43459 -38.52394 -37.76064 -36.55193 -34.91490 -33.94184 -31.43460 -31.15953 -30.14325 -29.18218 -26.64569 -24.63874 -23.91927 -22.30775 -21.56704 -19.51278 -18.87594 -18.09777 -17.69183 -17.66038 -17.15179 -16.62251 -15.98726 -15.80254 -15.53971 -15.21433 -14.78724 -14.56248 -14.41224 -13.98731 -13.98263 -13.54283 -13.51574 -13.48856 -13.42408 -12.64390 -12.54482 -12.36852 -11.97419 -11.96141 -11.62889 -11.49256 -11.26382 -11.17887 -11.00695 -10.97668 -10.40597 -10.32026 -9.82544 -9.63880 -8.75226 -8.62817 -8.10645 -7.11878 -6.52448 -3.93907 1.19577 1.33484 2.13499 2.67159 3.10246 3.22556 3.29353 3.47959 3.54049 3.61250 3.73588 3.83945 4.12372 4.12635 4.51790 4.63902 4.74409 4.82925 4.97481 5.02269 5.10634 5.15404 5.32684 5.53250 5.64597 5.76482 5.83891 6.03801 6.07386 6.24182 6.48407 6.91271 7.42674 7.46281 7.91591 8.03022 8.45220 9.05046 9.38335 9.87022 10.64667 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.002945 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.416051 B = 9505.014201 C =11817.329969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.429 3.571 11 O -0.590 6.590 12 C 0.110 3.890 13 N -0.712 5.712 14 C 0.222 3.778 15 C -0.168 4.168 16 C -0.083 4.083 17 C -0.069 4.069 18 Cl -0.085 7.085 19 C -0.151 4.151 20 C 0.058 3.942 21 O -0.298 6.298 22 C 0.008 3.992 23 C 0.273 3.727 24 F -0.196 7.196 25 F -0.195 7.195 26 H 0.273 0.727 27 H 0.395 0.605 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.419 0.581 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -22.564 -0.004 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.187 5.187 10 C 0.214 3.786 11 O -0.475 6.475 12 C -0.018 4.018 13 N -0.343 5.343 14 C 0.114 3.886 15 C -0.192 4.192 16 C -0.102 4.102 17 C -0.098 4.098 18 Cl -0.056 7.056 19 C -0.171 4.171 20 C 0.009 3.991 21 O -0.212 6.212 22 C -0.069 4.069 23 C 0.219 3.781 24 F -0.177 7.177 25 F -0.177 7.177 26 H 0.083 0.917 27 H 0.228 0.772 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.259 0.741 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.076 -22.094 -0.005 22.307 hybrid contribution 0.015 0.610 -0.003 0.610 sum 3.091 -21.484 -0.008 21.705 Atomic orbital electron populations 1.69613 1.05989 1.28381 1.49711 1.25305 0.95670 0.99889 0.96842 0.85765 0.79763 0.80825 0.77815 1.19112 1.20614 1.20607 1.19785 0.93511 0.81988 1.47953 0.87664 1.41790 1.09351 1.04464 1.63057 1.19699 0.88377 0.84894 0.85612 1.90540 1.13711 1.86657 1.56610 1.21016 0.92137 0.86563 1.02085 1.44558 1.10398 1.00424 1.78893 1.17334 0.91423 0.83719 0.96086 1.20490 0.92587 0.97079 1.09049 1.20691 0.99384 0.90621 0.99553 1.20168 0.92819 0.85093 1.11766 1.98333 1.88949 1.20910 1.97423 1.20673 0.94915 0.94954 1.06577 1.18132 0.82187 0.91937 1.06826 1.86137 1.13354 1.31733 1.90000 1.23970 0.88566 0.89760 1.04590 1.21999 0.95356 0.88654 0.72047 1.93052 1.95462 1.78432 1.50735 1.93050 1.95420 1.78398 1.50802 0.91686 0.77160 0.90391 0.90380 0.74078 0.84138 0.84959 0.84894 0.89052 0.89040 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.70 13.05 55.50 0.72 -22.98 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.52 5.29 -10.96 -0.06 -13.57 16 10 C 0.43 9.85 7.85 -10.99 -0.09 9.77 16 11 O -0.59 -15.76 15.24 5.55 0.08 -15.67 16 12 C 0.11 1.89 5.40 -5.19 -0.03 1.86 16 13 N -0.71 -12.17 5.71 -59.65 -0.34 -12.51 16 14 C 0.22 3.24 6.67 -83.54 -0.56 2.69 16 15 C -0.17 -2.09 9.31 -39.41 -0.37 -2.45 16 16 C -0.08 -0.92 9.82 -39.54 -0.39 -1.31 16 17 C -0.07 -0.78 6.32 -39.49 -0.25 -1.03 16 18 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.35 16 19 C -0.15 -1.68 8.82 -39.43 -0.35 -2.03 16 20 C 0.06 0.77 6.70 -39.09 -0.26 0.51 16 21 O -0.30 -4.06 9.27 -19.79 -0.18 -4.25 16 22 C 0.01 0.07 4.97 37.16 0.18 0.25 16 23 C 0.27 2.39 5.63 37.16 0.21 2.60 16 24 F -0.20 -2.42 17.28 2.25 0.04 -2.38 16 25 F -0.20 -2.41 17.28 2.25 0.04 -2.38 16 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 28 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 29 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 30 H 0.42 8.16 6.80 -40.82 -0.28 7.88 16 31 H 0.14 1.55 6.74 -52.48 -0.35 1.20 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 34 H 0.09 0.58 7.65 -51.93 -0.40 0.18 16 35 H 0.09 0.58 7.68 -51.93 -0.40 0.18 16 36 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -32.30 340.24 -6.49 -38.78 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -3.26 Total: 13.53 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.13 Total: 3.01 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.33 Total: -49.06 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.10 Total: -19.92 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.08 Total: -4.75 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.30 -6.49 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345529239.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.009 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds