Wall clock time and date at job start Tue Mar 31 2020 18:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48494 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47050 * 300.00056 * 3 2 1 6 6 H 1.48500 * 109.47341 * 59.99615 * 3 2 1 7 7 C 1.38953 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99396 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99729 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00324 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99771 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47114 * 179.97438 * 12 10 9 14 14 C 1.40029 * 120.00044 * 180.02562 * 13 12 10 15 15 C 1.38711 * 120.07757 * 359.97438 * 14 13 12 16 16 C 1.38228 * 119.99335 * 180.02562 * 15 14 13 17 17 C 1.38354 * 120.14709 * 359.97176 * 16 15 14 18 18 Cl 1.73601 * 119.92179 * 180.02562 * 17 16 15 19 19 C 1.38373 * 120.15349 * 359.77591 * 17 16 15 20 20 C 1.38510 * 120.00500 * 0.49886 * 19 17 16 21 21 O 1.36016 * 120.07321 * 179.74418 * 20 19 17 22 22 C 1.42903 * 116.99777 * 359.73368 * 21 20 19 23 23 C 1.53000 * 109.46726 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.47059 * 299.99479 * 23 22 21 25 25 F 1.39895 * 109.47411 * 59.99737 * 23 22 21 26 26 H 0.97003 * 120.00182 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00106 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47142 * 60.00038 * 12 10 9 29 29 H 1.09000 * 109.47288 * 299.99586 * 12 10 9 30 30 H 0.97005 * 119.99811 * 359.97438 * 13 12 10 31 31 H 1.08003 * 120.00581 * 0.04463 * 15 14 13 32 32 H 1.07997 * 119.92745 * 180.02562 * 16 15 14 33 33 H 1.08002 * 119.99850 * 180.25495 * 19 17 16 34 34 H 1.09002 * 109.47382 * 59.99685 * 22 21 20 35 35 H 1.09001 * 109.46938 * 299.99671 * 22 21 20 36 36 H 1.09004 * 109.46724 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8629 0.0011 13 7 2.1956 -5.9765 0.0004 14 6 1.7288 -7.2967 0.0002 15 6 0.3654 -7.5520 0.0013 16 6 -0.0935 -8.8559 0.0016 17 6 0.8044 -9.9085 0.0003 18 17 0.2217 -11.5438 0.0001 19 6 2.1658 -9.6608 -0.0060 20 6 2.6326 -8.3568 -0.0006 21 8 3.9705 -8.1117 -0.0016 22 6 4.8380 -9.2474 -0.0023 23 6 6.2938 -8.7769 -0.0040 24 9 6.5336 -8.0062 -1.1467 25 9 6.5361 -8.0057 1.1378 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3907 0.0005 28 1 0.6166 -4.9208 -0.8886 29 1 0.6173 -4.9205 0.8914 30 1 3.1493 -5.7993 -0.0007 31 1 -0.3376 -6.7321 0.0015 32 1 -1.1552 -9.0534 0.0020 33 1 2.8644 -10.4844 -0.0111 34 1 4.6495 -9.8480 -0.8922 35 1 4.6509 -9.8481 0.8878 36 1 6.9555 -9.6431 -0.0050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345529239.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:54 Heat of formation + Delta-G solvation = -177.874042 kcal Electronic energy + Delta-G solvation = -25553.790671 eV Core-core repulsion = 21119.863097 eV Total energy + Delta-G solvation = -4433.927575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.90161 -47.97070 -41.38152 -40.26253 -38.71924 -37.49563 -36.30946 -35.65559 -33.38781 -31.97920 -31.10833 -30.23277 -28.06633 -26.25472 -24.84064 -23.18478 -22.59466 -21.18081 -20.07430 -19.75472 -18.75210 -18.47310 -17.94585 -17.72605 -17.12023 -16.99817 -16.69263 -16.35391 -16.25416 -16.10414 -15.84943 -15.20672 -14.94426 -14.88151 -14.49367 -14.42340 -14.33362 -13.93388 -13.87890 -13.57099 -13.43834 -12.98362 -12.91748 -12.81485 -12.47035 -12.36355 -12.13804 -11.96325 -11.91553 -11.79607 -11.59194 -10.83217 -10.54949 -10.09717 -9.64222 -8.52546 -8.19506 -6.01901 0.29138 0.39596 1.26475 1.33529 1.41108 1.54741 1.90817 1.91760 2.20378 2.41613 2.69225 2.84004 3.14725 3.15759 3.29957 3.49530 3.77238 3.94673 4.02989 4.15043 4.17710 4.30544 4.39095 4.39312 4.42308 4.48448 4.70008 4.85236 5.14194 5.32318 5.36988 5.59606 5.84919 6.00611 6.38924 6.50874 6.68780 7.04477 7.44485 7.97954 8.64498 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.002945 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.416051 B = 9505.014201 C =11817.329969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.007 4.007 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.078 0.922 9 N -0.559 5.559 10 C 0.427 3.573 11 O -0.632 6.632 12 C 0.127 3.873 13 N -0.731 5.731 14 C 0.190 3.810 15 C -0.165 4.165 16 C -0.085 4.085 17 C -0.068 4.068 18 Cl -0.070 7.070 19 C -0.147 4.147 20 C 0.050 3.950 21 O -0.332 6.332 22 C -0.003 4.003 23 C 0.260 3.740 24 F -0.221 7.221 25 F -0.221 7.221 26 H 0.280 0.720 27 H 0.401 0.599 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.404 0.596 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -24.486 -0.005 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.208 4.208 3 Si 0.816 3.184 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.195 5.195 10 C 0.215 3.785 11 O -0.520 6.520 12 C 0.000 4.000 13 N -0.362 5.362 14 C 0.085 3.915 15 C -0.188 4.188 16 C -0.104 4.104 17 C -0.097 4.097 18 Cl -0.042 7.042 19 C -0.167 4.167 20 C 0.001 3.999 21 O -0.247 6.247 22 C -0.078 4.078 23 C 0.208 3.792 24 F -0.203 7.203 25 F -0.203 7.203 26 H 0.090 0.910 27 H 0.236 0.764 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.241 0.759 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.052 -24.068 -0.006 24.156 hybrid contribution 0.314 1.008 -0.003 1.055 sum 2.366 -23.061 -0.009 23.182 Atomic orbital electron populations 1.69658 1.06740 1.29538 1.49370 1.26036 0.96563 1.02363 0.95823 0.84875 0.77969 0.77033 0.78492 1.20001 1.19406 1.19392 1.19697 0.92734 0.83862 1.50460 0.90377 1.41809 1.09548 1.04420 1.63710 1.20710 0.88177 0.86395 0.83243 1.90509 1.15989 1.87644 1.57836 1.20895 0.91557 0.83369 1.04218 1.44468 1.09266 1.01340 1.81098 1.17672 0.92702 0.82884 0.98207 1.20698 0.91887 0.98165 1.08094 1.20949 1.00599 0.90004 0.98877 1.20385 0.93028 0.85909 1.10409 1.98345 1.88776 1.19738 1.97291 1.20913 0.95495 0.94764 1.05489 1.18319 0.82296 0.92464 1.06779 1.86110 1.13855 1.34547 1.90154 1.24378 0.87452 0.89004 1.06965 1.22859 0.96972 0.89301 0.70097 1.92994 1.95677 1.79443 1.52171 1.92992 1.95637 1.79411 1.52237 0.91015 0.76437 0.88064 0.88051 0.75940 0.82977 0.82753 0.82236 0.86543 0.86538 0.79458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.04 13.05 21.66 0.28 -47.76 16 2 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 3 Si 0.99 42.48 29.55 68.60 2.03 44.51 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.56 -28.11 5.29 -306.99 -1.62 -29.73 16 10 C 0.43 20.23 7.85 87.66 0.69 20.92 16 11 O -0.63 -35.41 15.24 -3.07 -0.05 -35.46 16 12 C 0.13 4.35 5.40 85.63 0.46 4.81 16 13 N -0.73 -25.42 5.71 -342.64 -1.96 -27.37 16 14 C 0.19 5.46 6.67 38.20 0.25 5.71 16 15 C -0.16 -3.82 9.31 22.38 0.21 -3.61 16 16 C -0.09 -1.67 9.82 22.29 0.22 -1.45 16 17 C -0.07 -1.35 6.32 22.33 0.14 -1.21 16 18 Cl -0.07 -1.20 28.95 -2.72 -0.08 -1.28 16 19 C -0.15 -2.92 8.82 22.37 0.20 -2.72 16 20 C 0.05 1.29 6.70 22.59 0.15 1.44 16 21 O -0.33 -9.01 9.27 -93.73 -0.87 -9.88 16 22 C 0.00 -0.04 4.97 71.98 0.36 0.32 16 23 C 0.26 4.25 5.63 71.98 0.41 4.66 16 24 F -0.22 -5.51 17.28 44.97 0.78 -4.73 16 25 F -0.22 -5.51 17.28 44.97 0.78 -4.73 16 26 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 27 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 28 H 0.10 2.96 7.95 -2.39 -0.02 2.94 16 29 H 0.10 2.96 7.95 -2.39 -0.02 2.94 16 30 H 0.40 16.53 6.80 -92.70 -0.63 15.90 16 31 H 0.15 3.04 6.74 -2.91 -0.02 3.02 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.16 2.18 6.30 -2.91 -0.02 2.16 16 34 H 0.12 1.16 7.65 -2.39 -0.02 1.14 16 35 H 0.12 1.16 7.68 -2.39 -0.02 1.15 16 36 H 0.19 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.07 340.24 3.47 -69.60 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.19 Total: 36.09 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 4.37 Total: 10.75 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -3.30 Total: -104.87 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.92 Total: -45.33 kcal Atomic # 9 Polarization: -11.02 SS G_CDS: 1.55 Total: -9.46 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -73.07 3.47 -69.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345529239.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.276 kcal (2) G-P(sol) polarization free energy of solvation -73.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds