Wall clock time and date at job start Tue Mar 31 2020 17:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46913 * 36.53558 * 3 2 1 5 5 C 1.36929 * 120.00302 * 273.33292 * 4 3 2 6 6 H 1.08003 * 120.00346 * 187.24239 * 5 4 3 7 7 C 1.38811 * 119.99947 * 7.23809 * 5 4 3 8 8 N 1.31618 * 120.00276 * 25.60565 * 7 5 4 9 9 Si 1.86801 * 120.00112 * 205.60405 * 7 5 4 10 10 H 1.48499 * 109.47282 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47481 * 120.00409 * 9 7 5 12 12 H 1.48506 * 109.47158 * 240.00181 * 9 7 5 13 13 S 1.65600 * 119.99495 * 93.33667 * 4 3 2 14 14 O 1.42107 * 106.39826 * 156.45795 * 13 4 3 15 15 O 1.42102 * 106.40641 * 23.54037 * 13 4 3 16 16 C 1.76200 * 107.21958 * 269.99586 * 13 4 3 17 17 C 1.38305 * 119.96574 * 270.02763 * 16 13 4 18 18 C 1.38252 * 120.12550 * 179.97438 * 17 16 13 19 19 C 1.38146 * 120.06608 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.93441 * 359.69759 * 19 18 17 21 21 N 1.40265 * 120.06512 * 180.30470 * 20 19 18 22 22 C 1.35067 * 127.38655 * 0.27398 * 21 20 19 23 23 N 1.30745 * 107.27244 * 179.97438 * 22 21 20 24 24 N 1.28422 * 110.64430 * 0.02562 * 23 22 21 25 25 N 1.28943 * 110.20177 * 359.72361 * 24 23 22 26 26 C 1.38095 * 119.96667 * 90.00205 * 16 13 4 27 27 H 1.08999 * 109.47152 * 276.54126 * 3 2 1 28 28 H 1.08997 * 109.47178 * 156.54146 * 3 2 1 29 29 H 0.97000 * 120.00651 * 179.97438 * 8 7 5 30 30 H 1.07999 * 119.93734 * 0.02562 * 17 16 13 31 31 H 1.08000 * 119.96499 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.03264 * 180.02562 * 19 18 17 33 33 H 1.07998 * 126.36781 * 359.95710 * 22 21 20 34 34 H 1.07998 * 120.03337 * 0.02562 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.1089 -0.8223 5 6 3.2605 -2.3508 -0.2691 6 1 3.7295 -3.1387 -0.8399 7 6 2.8239 -2.5970 1.0253 8 7 1.8480 -1.8784 1.5386 9 14 3.6214 -3.9484 2.0388 10 1 4.6867 -4.6042 1.2387 11 1 4.2156 -3.3613 3.2666 12 1 2.5961 -4.9539 2.4173 13 16 3.4513 -0.8612 -2.4208 14 8 4.3766 -1.8752 -2.7883 15 8 3.7226 0.5266 -2.5614 16 6 1.9791 -1.1756 -3.3364 17 6 1.7152 -2.4503 -3.8038 18 6 0.5608 -2.7008 -4.5221 19 6 -0.3324 -1.6779 -4.7755 20 6 -0.0730 -0.3990 -4.3028 21 7 -0.9812 0.6403 -4.5530 22 6 -2.1486 0.5645 -5.2281 23 7 -2.6771 1.7604 -5.2251 24 7 -1.9231 2.5871 -4.5946 25 7 -0.8741 1.9831 -4.1502 26 6 1.0896 -0.1492 -3.5862 27 1 2.9714 -0.1162 1.0210 28 1 2.9709 0.9435 -0.4091 29 1 1.5426 -2.0507 2.4430 30 1 2.4118 -3.2517 -3.6065 31 1 0.3571 -3.6973 -4.8854 32 1 -1.2343 -1.8743 -5.3363 33 1 -2.5675 -0.3195 -5.6856 34 1 1.2962 0.8459 -3.2210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350627138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:11 Heat of formation + Delta-G solvation = 129.818192 kcal Electronic energy + Delta-G solvation = -26329.800973 eV Core-core repulsion = 22394.241579 eV Total energy + Delta-G solvation = -3935.559394 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.20601 -39.32675 -36.93702 -36.16445 -35.08170 -34.72489 -34.62161 -32.40200 -32.01052 -31.13517 -30.06901 -27.72487 -25.11692 -24.37293 -24.05871 -22.19703 -21.78453 -19.32608 -18.72347 -18.04898 -16.99376 -16.61685 -16.52823 -16.41969 -16.20084 -15.45855 -15.25480 -14.86175 -14.52504 -13.94559 -13.71132 -13.48912 -13.25105 -13.14166 -12.59255 -12.57002 -12.16683 -11.92666 -11.74063 -11.63809 -11.59915 -11.54110 -11.24797 -11.06936 -11.05063 -10.96540 -10.73669 -10.54165 -10.49551 -10.31710 -10.20439 -9.86767 -9.27892 -8.73319 -8.65595 -7.03477 -4.32160 0.31814 0.95007 1.35768 1.63718 1.74226 2.21535 2.89221 2.99587 3.06595 3.39166 3.60682 3.76937 3.94308 3.98899 4.16794 4.30323 4.36531 4.64809 4.75277 4.78452 4.84755 5.13379 5.17120 5.19206 5.33761 5.46614 5.60152 5.82161 5.93689 6.05287 6.16165 6.20023 6.30749 6.36720 6.66767 6.82902 6.90998 7.79524 8.17633 8.34925 8.60250 8.71975 9.94294 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.004484 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.305353 B = 6242.498759 C = 6646.605455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.238 3.762 3 C 0.221 3.779 4 N -0.787 5.787 5 C -0.233 4.233 6 H 0.133 0.867 7 C 0.030 3.970 8 N -0.822 5.822 9 Si 0.939 3.061 10 H -0.257 1.257 11 H -0.271 1.271 12 H -0.277 1.277 13 S 2.510 3.490 14 O -0.973 6.973 15 O -0.988 6.988 16 C -0.639 4.639 17 C -0.014 4.014 18 C -0.121 4.121 19 C -0.092 4.092 20 C 0.097 3.903 21 N -0.315 5.315 22 C 0.217 3.783 23 N -0.334 5.334 24 N -0.042 5.042 25 N -0.068 5.068 26 C -0.009 4.009 27 H 0.134 0.866 28 H 0.106 0.894 29 H 0.286 0.714 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.236 0.764 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -4.110 -5.782 7.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.081 4.081 3 C 0.092 3.908 4 N -0.609 5.609 5 C -0.383 4.383 6 H 0.150 0.850 7 C -0.184 4.184 8 N -0.461 5.461 9 Si 0.763 3.237 10 H -0.180 1.180 11 H -0.196 1.196 12 H -0.203 1.203 13 S 2.608 3.392 14 O -0.962 6.962 15 O -0.977 6.977 16 C -0.715 4.715 17 C -0.034 4.034 18 C -0.140 4.140 19 C -0.113 4.113 20 C 0.004 3.996 21 N -0.105 5.105 22 C -0.080 4.080 23 N -0.184 5.184 24 N -0.037 5.037 25 N -0.053 5.053 26 C -0.030 4.030 27 H 0.152 0.848 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.252 0.748 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.223 -2.210 -6.007 6.776 hybrid contribution -0.392 -1.936 0.194 1.985 sum -2.614 -4.146 -5.813 7.604 Atomic orbital electron populations 1.80897 1.13655 1.10525 1.10006 1.29471 0.95591 0.91184 0.91885 1.19083 0.81251 0.90279 1.00206 1.55801 1.70555 1.14783 1.19735 1.20428 1.29559 0.91766 0.96535 0.84988 1.25736 0.94808 0.99085 0.98752 1.69957 1.20442 1.38279 1.17446 0.85635 0.79467 0.79213 0.79401 1.18036 1.19601 1.20291 1.12946 0.78672 0.73793 0.73763 1.93374 1.61608 1.58423 1.82795 1.93381 1.85465 1.32908 1.85949 1.32817 1.26333 0.98744 1.13596 1.21132 0.95527 0.95690 0.91024 1.21139 0.94333 0.98678 0.99834 1.20898 1.00351 0.90337 0.99744 1.17699 0.91406 0.85391 1.05055 1.49062 1.16090 1.08888 1.36445 1.27324 0.84985 1.00237 0.95438 1.74427 1.25464 0.98439 1.20048 1.78054 0.97512 1.22249 1.05883 1.82760 1.18220 0.85150 1.19204 1.20647 0.89769 0.99982 0.92593 0.84835 0.87646 0.90313 0.83612 0.84264 0.84988 0.74762 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.88 18.54 42.15 0.78 -10.10 16 2 C 0.24 5.05 13.29 -20.76 -0.28 4.78 16 3 C 0.22 4.19 5.45 -6.83 -0.04 4.15 16 4 N -0.79 -15.82 2.88 -62.77 -0.18 -16.00 16 5 C -0.23 -4.75 9.47 -15.06 -0.14 -4.89 16 6 H 0.13 2.62 7.22 -52.48 -0.38 2.24 16 7 C 0.03 0.60 4.90 -17.43 -0.09 0.51 16 8 N -0.82 -17.30 8.99 55.49 0.50 -16.80 16 9 Si 0.94 15.84 29.62 -169.99 -5.04 10.80 16 10 H -0.26 -4.28 7.11 56.52 0.40 -3.88 16 11 H -0.27 -4.56 7.11 56.52 0.40 -4.16 16 12 H -0.28 -4.82 7.11 56.52 0.40 -4.42 16 13 S 2.51 50.76 5.65 -107.50 -0.61 50.15 16 14 O -0.97 -21.13 16.05 -57.17 -0.92 -22.05 16 15 O -0.99 -21.37 15.85 -57.17 -0.91 -22.27 16 16 C -0.64 -11.77 5.97 -39.61 -0.24 -12.01 16 17 C -0.01 -0.22 9.52 -39.55 -0.38 -0.60 16 18 C -0.12 -1.53 10.04 -39.61 -0.40 -1.92 16 19 C -0.09 -1.15 9.49 -39.41 -0.37 -1.52 16 20 C 0.10 1.55 6.70 -83.57 -0.56 0.98 16 21 N -0.31 -4.99 3.85 -11.74 -0.05 -5.04 16 22 C 0.22 2.73 12.16 -90.15 -1.10 1.63 16 23 N -0.33 -5.18 12.15 29.64 0.36 -4.82 16 24 N -0.04 -0.75 13.39 60.35 0.81 0.06 16 25 N -0.07 -1.26 13.34 60.35 0.80 -0.45 16 26 C -0.01 -0.16 9.17 -39.41 -0.36 -0.52 16 27 H 0.13 2.42 6.47 -51.93 -0.34 2.08 16 28 H 0.11 1.77 6.95 -51.93 -0.36 1.41 16 29 H 0.29 5.75 8.31 -40.82 -0.34 5.41 16 30 H 0.15 2.14 7.61 -52.49 -0.40 1.74 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.13 1.05 6.88 -52.49 -0.36 0.69 16 33 H 0.24 1.52 7.19 -52.49 -0.38 1.14 16 34 H 0.15 2.85 7.33 -52.49 -0.38 2.47 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -29.85 323.83 -5.66 -35.51 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -2.16 Total: 5.54 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -3.94 Total: -9.40 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 3.03 Total: -53.15 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.82 Total: -44.33 kcal Atomic # 14 Polarization: 15.84 SS G_CDS: -5.04 Total: 10.80 kcal Atomic # 16 Polarization: 50.76 SS G_CDS: -0.61 Total: 50.15 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.85 -5.66 -35.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350627138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.327 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds