Wall clock time and date at job start Tue Mar 31 2020 17:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46913 * 36.53558 * 3 2 1 5 5 C 1.36929 * 120.00302 * 273.33292 * 4 3 2 6 6 H 1.08003 * 120.00346 * 187.24239 * 5 4 3 7 7 C 1.38811 * 119.99947 * 7.23809 * 5 4 3 8 8 N 1.31618 * 120.00276 * 25.60565 * 7 5 4 9 9 Si 1.86801 * 120.00112 * 205.60405 * 7 5 4 10 10 H 1.48499 * 109.47282 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47481 * 120.00409 * 9 7 5 12 12 H 1.48506 * 109.47158 * 240.00181 * 9 7 5 13 13 S 1.65600 * 119.99495 * 93.33667 * 4 3 2 14 14 O 1.42107 * 106.39826 * 156.45795 * 13 4 3 15 15 O 1.42102 * 106.40641 * 23.54037 * 13 4 3 16 16 C 1.76200 * 107.21958 * 269.99586 * 13 4 3 17 17 C 1.38305 * 119.96574 * 270.02763 * 16 13 4 18 18 C 1.38252 * 120.12550 * 179.97438 * 17 16 13 19 19 C 1.38146 * 120.06608 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.93441 * 359.69759 * 19 18 17 21 21 N 1.40265 * 120.06512 * 180.30470 * 20 19 18 22 22 C 1.35067 * 127.38655 * 0.27398 * 21 20 19 23 23 N 1.30745 * 107.27244 * 179.97438 * 22 21 20 24 24 N 1.28422 * 110.64430 * 0.02562 * 23 22 21 25 25 N 1.28943 * 110.20177 * 359.72361 * 24 23 22 26 26 C 1.38095 * 119.96667 * 90.00205 * 16 13 4 27 27 H 1.08999 * 109.47152 * 276.54126 * 3 2 1 28 28 H 1.08997 * 109.47178 * 156.54146 * 3 2 1 29 29 H 0.97000 * 120.00651 * 179.97438 * 8 7 5 30 30 H 1.07999 * 119.93734 * 0.02562 * 17 16 13 31 31 H 1.08000 * 119.96499 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.03264 * 180.02562 * 19 18 17 33 33 H 1.07998 * 126.36781 * 359.95710 * 22 21 20 34 34 H 1.07998 * 120.03337 * 0.02562 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.1089 -0.8223 5 6 3.2605 -2.3508 -0.2691 6 1 3.7295 -3.1387 -0.8399 7 6 2.8239 -2.5970 1.0253 8 7 1.8480 -1.8784 1.5386 9 14 3.6214 -3.9484 2.0388 10 1 4.6867 -4.6042 1.2387 11 1 4.2156 -3.3613 3.2666 12 1 2.5961 -4.9539 2.4173 13 16 3.4513 -0.8612 -2.4208 14 8 4.3766 -1.8752 -2.7883 15 8 3.7226 0.5266 -2.5614 16 6 1.9791 -1.1756 -3.3364 17 6 1.7152 -2.4503 -3.8038 18 6 0.5608 -2.7008 -4.5221 19 6 -0.3324 -1.6779 -4.7755 20 6 -0.0730 -0.3990 -4.3028 21 7 -0.9812 0.6403 -4.5530 22 6 -2.1486 0.5645 -5.2281 23 7 -2.6771 1.7604 -5.2251 24 7 -1.9231 2.5871 -4.5946 25 7 -0.8741 1.9831 -4.1502 26 6 1.0896 -0.1492 -3.5862 27 1 2.9714 -0.1162 1.0210 28 1 2.9709 0.9435 -0.4091 29 1 1.5426 -2.0507 2.4430 30 1 2.4118 -3.2517 -3.6065 31 1 0.3571 -3.6973 -4.8854 32 1 -1.2343 -1.8743 -5.3363 33 1 -2.5675 -0.3195 -5.6856 34 1 1.2962 0.8459 -3.2210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350627138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:10 Heat of formation + Delta-G solvation = 109.775245 kcal Electronic energy + Delta-G solvation = -26330.670100 eV Core-core repulsion = 22394.241579 eV Total energy + Delta-G solvation = -3936.428522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.38815 -40.50337 -38.51556 -37.86200 -36.45861 -36.33114 -36.25001 -33.58867 -33.54748 -32.32288 -31.25939 -29.28870 -26.29501 -25.93004 -25.26523 -23.38524 -22.99259 -20.67322 -20.19207 -19.60547 -18.55644 -18.01480 -17.81319 -17.61556 -17.43690 -16.82747 -16.57079 -16.31783 -15.95287 -15.29004 -15.04116 -14.83716 -14.61412 -14.42594 -14.14748 -13.82091 -13.62585 -13.31376 -13.26297 -13.23022 -12.90160 -12.85229 -12.80279 -12.66645 -12.60000 -12.24100 -12.16760 -12.07521 -11.85570 -11.74405 -11.69476 -11.35036 -10.47407 -10.25270 -9.86650 -8.53384 -5.91165 -0.82207 -0.37664 -0.09979 0.44390 0.62010 1.08382 1.53682 1.62290 1.74079 1.88093 2.27203 2.31283 2.37809 2.72203 2.83569 2.93742 3.15756 3.22197 3.53438 3.59688 3.62064 3.82371 3.86141 3.98892 4.15026 4.31838 4.34454 4.44430 4.63860 4.79120 4.89382 5.02450 5.08657 5.12809 5.20188 5.38552 5.69557 6.25234 6.66252 7.03581 7.06920 7.15536 8.45367 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.004484 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.305353 B = 6242.498759 C = 6646.605455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.253 3.747 3 C 0.221 3.779 4 N -0.799 5.799 5 C -0.260 4.260 6 H 0.133 0.867 7 C 0.007 3.993 8 N -0.854 5.854 9 Si 0.995 3.005 10 H -0.253 1.253 11 H -0.270 1.270 12 H -0.283 1.283 13 S 2.537 3.463 14 O -0.990 6.990 15 O -1.009 7.009 16 C -0.664 4.664 17 C -0.029 4.029 18 C -0.106 4.106 19 C -0.069 4.069 20 C 0.085 3.915 21 N -0.323 5.323 22 C 0.242 3.758 23 N -0.353 5.353 24 N -0.060 5.060 25 N -0.112 5.112 26 C -0.036 4.036 27 H 0.142 0.858 28 H 0.122 0.878 29 H 0.285 0.715 30 H 0.152 0.848 31 H 0.191 0.809 32 H 0.193 0.807 33 H 0.301 0.699 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 -6.644 -7.688 10.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.066 4.066 3 C 0.092 3.908 4 N -0.621 5.621 5 C -0.407 4.407 6 H 0.150 0.850 7 C -0.204 4.204 8 N -0.493 5.493 9 Si 0.817 3.183 10 H -0.177 1.177 11 H -0.195 1.195 12 H -0.209 1.209 13 S 2.638 3.362 14 O -0.980 6.980 15 O -0.999 6.999 16 C -0.745 4.745 17 C -0.048 4.048 18 C -0.125 4.125 19 C -0.090 4.090 20 C -0.008 4.008 21 N -0.113 5.113 22 C -0.053 4.053 23 N -0.203 5.203 24 N -0.055 5.055 25 N -0.098 5.098 26 C -0.057 4.057 27 H 0.160 0.840 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.170 0.830 31 H 0.208 0.792 32 H 0.210 0.790 33 H 0.316 0.684 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.547 -4.750 -7.869 9.851 hybrid contribution -0.063 -1.151 0.525 1.266 sum -3.610 -5.900 -7.344 10.088 Atomic orbital electron populations 1.80868 1.14736 1.11864 1.11377 1.29881 0.95972 0.90009 0.90688 1.19268 0.80020 0.90740 1.00810 1.55489 1.71743 1.15102 1.19792 1.20526 1.31149 0.91733 0.97274 0.85004 1.26304 0.94647 1.00476 0.98961 1.70006 1.21686 1.39975 1.17637 0.84814 0.78441 0.76945 0.78060 1.17674 1.19477 1.20895 1.11210 0.78328 0.72866 0.73777 1.93350 1.62566 1.58844 1.83243 1.93355 1.86046 1.34066 1.86405 1.32242 1.25616 1.00459 1.16149 1.21440 0.97375 0.94506 0.91505 1.21711 0.92295 1.00968 0.97512 1.21607 1.01771 0.87966 0.97623 1.17946 0.90781 0.86833 1.05208 1.49092 1.17115 1.08072 1.37035 1.28554 0.82952 1.00974 0.92823 1.74366 1.25864 0.99572 1.20525 1.78042 0.97803 1.23256 1.06356 1.82749 1.19074 0.87006 1.20930 1.20491 0.91723 0.98909 0.94605 0.84032 0.86079 0.90451 0.83034 0.79233 0.79005 0.68421 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.04 18.54 20.01 0.37 -23.67 16 2 C 0.25 11.06 13.29 89.44 1.19 12.24 16 3 C 0.22 8.62 5.45 84.57 0.46 9.08 16 4 N -0.80 -32.78 2.88 -352.51 -1.02 -33.79 16 5 C -0.26 -10.70 9.47 84.03 0.80 -9.91 16 6 H 0.13 5.29 7.22 -2.91 -0.02 5.26 16 7 C 0.01 0.26 4.90 84.86 0.42 0.68 16 8 N -0.85 -36.44 8.99 21.65 0.19 -36.25 16 9 Si 1.00 32.33 29.62 68.60 2.03 34.36 16 10 H -0.25 -7.98 7.11 99.48 0.71 -7.28 16 11 H -0.27 -8.64 7.11 99.48 0.71 -7.93 16 12 H -0.28 -9.39 7.11 99.48 0.71 -8.68 16 13 S 2.54 104.55 5.65 -56.49 -0.32 104.23 16 14 O -0.99 -43.39 16.05 -128.00 -2.05 -45.44 16 15 O -1.01 -45.11 15.85 -128.00 -2.03 -47.14 16 16 C -0.66 -24.30 5.97 22.25 0.13 -24.17 16 17 C -0.03 -0.84 9.52 22.29 0.21 -0.63 16 18 C -0.11 -2.14 10.04 22.25 0.22 -1.91 16 19 C -0.07 -1.34 9.49 22.38 0.21 -1.13 16 20 C 0.08 2.50 6.70 38.07 0.26 2.75 16 21 N -0.32 -9.58 3.85 -191.06 -0.74 -10.32 16 22 C 0.24 5.12 12.16 180.18 2.19 7.31 16 23 N -0.35 -10.25 12.15 -60.13 -0.73 -10.98 16 24 N -0.06 -2.12 13.39 37.02 0.50 -1.63 16 25 N -0.11 -4.17 13.34 37.02 0.49 -3.68 16 26 C -0.04 -1.32 9.17 22.38 0.21 -1.12 16 27 H 0.14 5.28 6.47 -2.39 -0.02 5.27 16 28 H 0.12 4.25 6.95 -2.39 -0.02 4.23 16 29 H 0.28 11.65 8.31 -92.71 -0.77 10.88 16 30 H 0.15 4.18 7.61 -2.91 -0.02 4.16 16 31 H 0.19 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.19 1.36 6.88 -2.91 -0.02 1.34 16 33 H 0.30 1.65 7.19 -2.91 -0.02 1.63 16 34 H 0.12 4.94 7.33 -2.91 -0.02 4.92 16 Total: -1.00 -69.53 323.83 4.18 -65.35 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.19 Total: 15.75 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 6.29 Total: -6.79 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -0.93 Total: -120.31 kcal Atomic # 8 Polarization: -88.50 SS G_CDS: -4.08 Total: -92.59 kcal Atomic # 14 Polarization: 32.33 SS G_CDS: 2.03 Total: 34.36 kcal Atomic # 16 Polarization: 104.55 SS G_CDS: -0.32 Total: 104.23 kcal Total: -69.53 4.18 -65.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350627138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.122 kcal (2) G-P(sol) polarization free energy of solvation -69.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds