Wall clock time and date at job start Tue Mar 31 2020 17:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99749 * 2 1 4 4 H 1.48497 * 109.47089 * 269.99642 * 3 2 1 5 5 H 1.48506 * 109.47314 * 30.00263 * 3 2 1 6 6 H 1.48508 * 109.47053 * 149.99676 * 3 2 1 7 7 C 1.37875 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00595 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99594 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99817 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00283 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00048 * 180.02562 * 11 10 9 14 14 N 1.46496 * 109.47274 * 180.02562 * 13 11 10 15 15 S 1.65595 * 120.00294 * 165.00236 * 14 13 11 16 16 O 1.42100 * 106.40001 * 311.45783 * 15 14 13 17 17 O 1.42103 * 106.40189 * 178.53750 * 15 14 13 18 18 C 1.76200 * 107.21821 * 64.99484 * 15 14 13 19 19 C 1.38425 * 120.02235 * 90.00231 * 18 15 14 20 20 F 1.35101 * 120.01402 * 359.70400 * 19 18 15 21 21 C 1.38476 * 119.97328 * 179.97438 * 19 18 15 22 22 C 1.38207 * 120.02410 * 0.02562 * 21 19 18 23 23 C 1.38207 * 120.05360 * 359.97438 * 22 21 19 24 24 C 1.38412 * 120.02714 * 269.97758 * 18 15 14 25 25 F 1.35096 * 120.01191 * 0.02562 * 24 18 15 26 26 H 0.97001 * 120.00424 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47527 * 60.00136 * 9 7 2 28 28 H 1.09002 * 109.47226 * 299.99583 * 9 7 2 29 29 H 0.96998 * 120.00218 * 0.02562 * 10 9 7 30 30 H 1.08996 * 109.46723 * 60.00247 * 13 11 10 31 31 H 1.09002 * 109.46855 * 300.00413 * 13 11 10 32 32 H 0.97005 * 119.99932 * 344.99702 * 14 13 11 33 33 H 1.08001 * 119.98752 * 179.97438 * 21 19 18 34 34 H 1.08000 * 119.97200 * 180.02562 * 22 21 19 35 35 H 1.07995 * 119.99247 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8215 -0.0001 12 8 6.1131 -1.8997 0.0004 13 6 5.8274 -4.2423 -0.0008 14 7 7.2923 -4.2423 -0.0002 15 16 8.1202 -5.6277 0.3704 16 8 7.5387 -6.1357 1.5633 17 8 9.5011 -5.3141 0.2512 18 6 7.7655 -6.8015 -0.8949 19 6 8.5671 -6.8690 -2.0215 20 9 9.6183 -6.0307 -2.1541 21 6 8.2877 -7.7922 -3.0150 22 6 7.2088 -8.6457 -2.8824 23 6 6.4078 -8.5793 -1.7581 24 6 6.6856 -7.6572 -0.7630 25 9 5.9025 -7.5924 0.3360 26 1 -0.4851 0.8400 0.0004 27 1 3.8746 -0.6808 0.8905 28 1 3.8752 -0.6796 -0.8895 29 1 3.3696 -3.3125 -0.0009 30 1 5.4641 -4.7556 -0.8911 31 1 5.4639 -4.7566 0.8888 32 1 7.7774 -3.4307 -0.2169 33 1 8.9127 -7.8448 -3.8943 34 1 6.9920 -9.3657 -3.6576 35 1 5.5648 -9.2464 -1.6556 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350831629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:10 Heat of formation + Delta-G solvation = -162.252149 kcal Electronic energy + Delta-G solvation = -26318.781016 eV Core-core repulsion = 21887.574564 eV Total energy + Delta-G solvation = -4431.206452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.67675 -49.62033 -39.31812 -39.26956 -37.42787 -36.10716 -35.04773 -34.28524 -32.44945 -31.93377 -30.97381 -28.82738 -26.42506 -24.34613 -23.56942 -22.15738 -20.25945 -20.00194 -18.99580 -18.38581 -17.92702 -17.81509 -17.09725 -16.61597 -16.37262 -16.18146 -15.87684 -15.82459 -15.59040 -15.28123 -15.17010 -14.97838 -14.56584 -13.82788 -13.44114 -13.39699 -13.14513 -12.97749 -12.72541 -12.69070 -12.49010 -12.32999 -12.22778 -12.17304 -12.08939 -11.32756 -11.09525 -10.82713 -10.22141 -10.03331 -9.91886 -9.57245 -9.46145 -9.39231 -8.84696 -8.31456 -6.26680 -4.29810 -0.20286 0.10798 0.32686 2.44221 2.70967 2.96539 3.16870 3.23072 3.30228 3.37961 3.39794 3.54614 3.71914 3.80419 4.04917 4.28602 4.44226 4.46284 4.81486 4.85389 4.93169 5.08163 5.12794 5.17036 5.22520 5.30048 5.44685 5.53271 6.01913 6.69034 6.80623 6.97808 7.05302 7.29335 8.00352 8.38188 8.62511 8.75759 9.32489 10.85079 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.002976 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.140517 B = 9407.412504 C = 9862.936711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.699 5.699 11 C 0.501 3.499 12 O -0.549 6.549 13 C 0.093 3.907 14 N -1.097 6.097 15 S 2.701 3.299 16 O -0.936 6.936 17 O -0.939 6.939 18 C -0.768 4.768 19 C 0.230 3.770 20 F -0.103 7.103 21 C -0.187 4.187 22 C -0.006 4.006 23 C -0.185 4.185 24 C 0.227 3.773 25 F -0.101 7.101 26 H 0.268 0.732 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.400 0.600 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.431 0.569 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.785 -20.678 -6.979 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.347 5.347 11 C 0.284 3.716 12 O -0.428 6.428 13 C -0.037 4.037 14 N -0.862 5.862 15 S 2.785 3.215 16 O -0.926 6.926 17 O -0.929 6.929 18 C -0.852 4.852 19 C 0.209 3.791 20 F -0.080 7.080 21 C -0.207 4.207 22 C -0.025 4.025 23 C -0.205 4.205 24 C 0.206 3.794 25 F -0.079 7.079 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.234 0.766 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.271 0.729 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 15.582 -20.141 -6.199 26.209 hybrid contribution -0.177 0.724 -0.692 1.017 sum 15.405 -19.417 -6.891 25.726 Atomic orbital electron populations 1.69874 1.06218 1.27523 1.49141 1.24791 0.94799 0.99191 0.93788 0.86816 0.80588 0.83224 0.79044 1.19846 1.20838 1.18490 1.21066 0.88356 0.95325 1.53665 0.90110 1.19567 0.95431 0.78187 0.97059 1.46137 1.05264 1.11547 1.71788 1.20168 0.83654 0.90016 0.77779 1.90655 1.55417 1.45542 1.51142 1.21168 0.80235 0.97925 1.04340 1.55216 1.14618 1.28003 1.88325 1.02015 0.73335 0.72538 0.73645 1.93651 1.78537 1.79529 1.40872 1.93653 1.29650 1.83161 1.86420 1.31117 1.08760 1.24485 1.20886 1.16778 0.82750 0.87679 0.91864 1.91711 1.52905 1.68091 1.95329 1.21373 1.01232 0.97789 1.00271 1.21210 0.90619 0.94847 0.95789 1.21390 1.03615 1.01065 0.94426 1.16799 0.86335 0.92871 0.83401 1.91720 1.71528 1.94772 1.49854 0.92179 0.95395 0.95904 0.76615 0.89153 0.87060 0.72946 0.82923 0.82914 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.96 55.43 0.77 -25.12 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.55 -14.48 9.83 -34.44 -0.34 -14.82 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.80 16 9 C 0.22 5.17 4.50 -5.19 -0.02 5.15 16 10 N -0.70 -13.15 5.55 -61.47 -0.34 -13.49 16 11 C 0.50 8.80 7.90 -10.98 -0.09 8.72 16 12 O -0.55 -11.55 15.73 5.56 0.09 -11.46 16 13 C 0.09 1.19 6.70 -5.19 -0.03 1.15 16 14 N -1.10 -14.04 5.93 -11.66 -0.07 -14.11 16 15 S 2.70 34.44 5.63 -107.50 -0.60 33.84 16 16 O -0.94 -13.87 15.67 -57.17 -0.90 -14.77 16 17 O -0.94 -14.00 16.21 -57.17 -0.93 -14.93 16 18 C -0.77 -7.99 5.96 -39.45 -0.24 -8.23 16 19 C 0.23 2.18 7.21 -39.42 -0.28 1.90 16 20 F -0.10 -1.14 15.35 2.25 0.03 -1.11 16 21 C -0.19 -1.15 10.03 -39.50 -0.40 -1.55 16 22 C -0.01 -0.03 10.04 -39.60 -0.40 -0.43 16 23 C -0.19 -1.12 10.03 -39.50 -0.40 -1.52 16 24 C 0.23 2.09 7.21 -39.43 -0.28 1.81 16 25 F -0.10 -1.07 15.34 2.25 0.03 -1.04 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 28 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 29 H 0.40 6.41 8.32 -40.82 -0.34 6.07 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.26 7.75 -51.93 -0.40 0.86 16 32 H 0.43 5.70 7.70 -34.47 -0.27 5.44 16 33 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 35 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -35.50 329.46 -7.23 -42.73 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.04 Total: 3.96 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.57 Total: -5.76 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.36 Total: -52.72 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.74 Total: -41.16 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.07 Total: -2.14 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: 34.44 SS G_CDS: -0.60 Total: 33.84 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.50 -7.23 -42.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350831629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.523 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds