Wall clock time and date at job start Tue Mar 31 2020 17:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99749 * 2 1 4 4 H 1.48497 * 109.47089 * 269.99642 * 3 2 1 5 5 H 1.48506 * 109.47314 * 30.00263 * 3 2 1 6 6 H 1.48508 * 109.47053 * 149.99676 * 3 2 1 7 7 C 1.37875 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00595 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99594 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99817 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00283 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00048 * 180.02562 * 11 10 9 14 14 N 1.46496 * 109.47274 * 180.02562 * 13 11 10 15 15 S 1.65595 * 120.00294 * 165.00236 * 14 13 11 16 16 O 1.42100 * 106.40001 * 311.45783 * 15 14 13 17 17 O 1.42103 * 106.40189 * 178.53750 * 15 14 13 18 18 C 1.76200 * 107.21821 * 64.99484 * 15 14 13 19 19 C 1.38425 * 120.02235 * 90.00231 * 18 15 14 20 20 F 1.35101 * 120.01402 * 359.70400 * 19 18 15 21 21 C 1.38476 * 119.97328 * 179.97438 * 19 18 15 22 22 C 1.38207 * 120.02410 * 0.02562 * 21 19 18 23 23 C 1.38207 * 120.05360 * 359.97438 * 22 21 19 24 24 C 1.38412 * 120.02714 * 269.97758 * 18 15 14 25 25 F 1.35096 * 120.01191 * 0.02562 * 24 18 15 26 26 H 0.97001 * 120.00424 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47527 * 60.00136 * 9 7 2 28 28 H 1.09002 * 109.47226 * 299.99583 * 9 7 2 29 29 H 0.96998 * 120.00218 * 0.02562 * 10 9 7 30 30 H 1.08996 * 109.46723 * 60.00247 * 13 11 10 31 31 H 1.09002 * 109.46855 * 300.00413 * 13 11 10 32 32 H 0.97005 * 119.99932 * 344.99702 * 14 13 11 33 33 H 1.08001 * 119.98752 * 179.97438 * 21 19 18 34 34 H 1.08000 * 119.97200 * 180.02562 * 22 21 19 35 35 H 1.07995 * 119.99247 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8215 -0.0001 12 8 6.1131 -1.8997 0.0004 13 6 5.8274 -4.2423 -0.0008 14 7 7.2923 -4.2423 -0.0002 15 16 8.1202 -5.6277 0.3704 16 8 7.5387 -6.1357 1.5633 17 8 9.5011 -5.3141 0.2512 18 6 7.7655 -6.8015 -0.8949 19 6 8.5671 -6.8690 -2.0215 20 9 9.6183 -6.0307 -2.1541 21 6 8.2877 -7.7922 -3.0150 22 6 7.2088 -8.6457 -2.8824 23 6 6.4078 -8.5793 -1.7581 24 6 6.6856 -7.6572 -0.7630 25 9 5.9025 -7.5924 0.3360 26 1 -0.4851 0.8400 0.0004 27 1 3.8746 -0.6808 0.8905 28 1 3.8752 -0.6796 -0.8895 29 1 3.3696 -3.3125 -0.0009 30 1 5.4641 -4.7556 -0.8911 31 1 5.4639 -4.7566 0.8888 32 1 7.7774 -3.4307 -0.2169 33 1 8.9127 -7.8448 -3.8943 34 1 6.9920 -9.3657 -3.6576 35 1 5.5648 -9.2464 -1.6556 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350831629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:10 Heat of formation + Delta-G solvation = -191.501937 kcal Electronic energy + Delta-G solvation = -26320.049382 eV Core-core repulsion = 21887.574564 eV Total energy + Delta-G solvation = -4432.474818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.37565 -50.31107 -40.75830 -39.84017 -38.50750 -37.18857 -36.46688 -35.73554 -34.44005 -32.50837 -31.49752 -30.55317 -27.84648 -24.92751 -24.15875 -24.01578 -21.74529 -20.97331 -19.82662 -19.50529 -18.85517 -18.61419 -18.46535 -17.84884 -17.26767 -17.16442 -16.82932 -16.74514 -16.61971 -16.56140 -16.17221 -15.99842 -15.61416 -15.37160 -14.86567 -14.60862 -14.25992 -14.02450 -13.78163 -13.75820 -13.46500 -13.40635 -13.32219 -13.29359 -13.12356 -13.03649 -12.70513 -12.09010 -11.94109 -11.65313 -11.12003 -10.91524 -10.84601 -10.73707 -10.00542 -9.94915 -8.39241 -6.46218 -1.01238 -0.64736 -0.20631 1.33257 1.36517 1.47878 1.55176 1.60255 2.07106 2.28216 2.35666 2.44234 2.58293 2.86768 2.96410 3.15015 3.55647 3.64524 3.67105 4.05079 4.12773 4.19912 4.35760 4.39356 4.42441 4.78525 4.79501 4.85716 5.02377 5.02677 5.25771 5.42304 5.54322 5.74408 6.07192 6.54582 6.73990 7.13096 7.29636 8.75263 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.002976 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.140517 B = 9407.412504 C = 9862.936711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.229 3.771 10 N -0.698 5.698 11 C 0.502 3.498 12 O -0.584 6.584 13 C 0.100 3.900 14 N -1.102 6.102 15 S 2.713 3.287 16 O -0.964 6.964 17 O -0.969 6.969 18 C -0.776 4.776 19 C 0.202 3.798 20 F -0.121 7.121 21 C -0.177 4.177 22 C 0.013 3.987 23 C -0.174 4.174 24 C 0.204 3.796 25 F -0.115 7.115 26 H 0.272 0.728 27 H 0.014 0.986 28 H 0.017 0.983 29 H 0.414 0.586 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.429 0.571 33 H 0.181 0.819 34 H 0.201 0.799 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.084 -22.778 -8.925 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.106 3.894 10 N -0.348 5.348 11 C 0.287 3.713 12 O -0.465 6.465 13 C -0.029 4.029 14 N -0.865 5.865 15 S 2.802 3.198 16 O -0.954 6.954 17 O -0.959 6.959 18 C -0.866 4.866 19 C 0.181 3.819 20 F -0.099 7.099 21 C -0.196 4.196 22 C -0.004 4.004 23 C -0.193 4.193 24 C 0.183 3.817 25 F -0.093 7.093 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.250 0.750 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.267 0.733 33 H 0.198 0.802 34 H 0.218 0.782 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 15.888 -22.246 -8.111 28.515 hybrid contribution -0.290 1.201 -0.177 1.247 sum 15.598 -21.046 -8.288 27.476 Atomic orbital electron populations 1.69975 1.07670 1.28588 1.50682 1.25574 0.95506 1.02598 0.93662 0.85886 0.79252 0.79471 0.79438 1.18913 1.20097 1.18492 1.21290 0.89866 0.94699 1.52570 0.91868 1.19172 0.93481 0.80728 0.96052 1.45933 1.06340 1.10203 1.72333 1.20875 0.82605 0.91713 0.76066 1.90639 1.56155 1.47326 1.52426 1.21264 0.80100 0.94532 1.07027 1.55188 1.14598 1.28135 1.88615 1.01213 0.72462 0.72473 0.73701 1.93609 1.78741 1.79897 1.43180 1.93608 1.31390 1.83839 1.87088 1.30598 1.10529 1.24742 1.20719 1.17166 0.82845 0.89009 0.92882 1.91664 1.53806 1.68962 1.95473 1.21818 1.01656 0.96247 0.99854 1.21817 0.88621 0.94162 0.95847 1.21845 1.04205 0.99793 0.93477 1.17123 0.86384 0.94120 0.84120 1.91684 1.71836 1.94996 1.50803 0.91871 0.96781 0.96493 0.74969 0.85263 0.85490 0.73286 0.80166 0.78181 0.79890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 13.96 21.45 0.30 -54.23 16 2 C 0.03 1.50 5.47 84.65 0.46 1.96 16 3 Si 0.94 43.19 27.47 68.60 1.88 45.08 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 7 C -0.55 -29.13 9.83 25.60 0.25 -28.88 16 8 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 9 C 0.23 10.77 4.50 85.63 0.38 11.16 16 10 N -0.70 -25.84 5.55 -466.78 -2.59 -28.43 16 11 C 0.50 17.33 7.90 87.66 0.69 18.02 16 12 O -0.58 -24.64 15.73 -3.02 -0.05 -24.69 16 13 C 0.10 2.42 6.70 85.64 0.57 2.99 16 14 N -1.10 -28.17 5.93 -190.79 -1.13 -29.30 16 15 S 2.71 70.30 5.63 -56.49 -0.32 69.98 16 16 O -0.96 -29.10 15.67 -128.00 -2.01 -31.11 16 17 O -0.97 -30.09 16.21 -128.00 -2.07 -32.16 16 18 C -0.78 -15.41 5.96 22.36 0.13 -15.27 16 19 C 0.20 3.53 7.21 22.37 0.16 3.69 16 20 F -0.12 -2.69 15.35 44.97 0.69 -2.00 16 21 C -0.18 -1.51 10.03 22.32 0.22 -1.29 16 22 C 0.01 0.05 10.04 22.25 0.22 0.27 16 23 C -0.17 -1.38 10.03 22.32 0.22 -1.16 16 24 C 0.20 3.33 7.21 22.37 0.16 3.49 16 25 F -0.12 -2.30 15.34 44.97 0.69 -1.61 16 26 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 28 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 29 H 0.41 12.89 8.32 -92.71 -0.77 12.11 16 30 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.13 2.72 7.75 -2.39 -0.02 2.71 16 32 H 0.43 11.61 7.70 -96.74 -0.75 10.86 16 33 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 34 H 0.20 -1.06 8.06 -2.91 -0.02 -1.09 16 35 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 Total: -1.00 -79.27 329.46 -1.50 -80.77 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -0.39 Total: 12.71 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 3.49 Total: -5.00 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -3.42 Total: -111.97 kcal Atomic # 8 Polarization: -83.83 SS G_CDS: -4.13 Total: -87.96 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 1.38 Total: -3.60 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.08 kcal Atomic # 16 Polarization: 70.30 SS G_CDS: -0.32 Total: 69.98 kcal Total: -79.27 -1.50 -80.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350831629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.730 kcal (2) G-P(sol) polarization free energy of solvation -79.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds