Wall clock time and date at job start Tue Mar 31 2020 18:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48497 * 109.47186 * 275.41708 * 3 2 1 5 5 H 1.48499 * 109.47170 * 35.41447 * 3 2 1 6 6 H 1.48494 * 109.46990 * 155.41736 * 3 2 1 7 7 C 1.39927 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99642 * 341.72876 * 7 2 1 9 9 C 1.41434 * 120.00006 * 161.73288 * 7 2 1 10 10 C 1.40794 * 120.17686 * 330.16780 * 9 7 2 11 11 C 1.37705 * 120.03807 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41497 * 359.72345 * 11 10 9 13 13 C 1.39900 * 120.35396 * 0.56191 * 12 11 10 14 14 C 1.47848 * 120.02622 * 179.71379 * 13 12 11 15 15 N 1.32099 * 126.67395 * 359.72585 * 14 13 12 16 16 C 1.34214 * 105.54714 * 180.02562 * 15 14 13 17 17 C 1.50699 * 126.18827 * 180.02562 * 16 15 14 18 18 S 1.81399 * 109.46944 * 269.99881 * 17 16 15 19 19 O 1.42103 * 108.58236 * 294.48853 * 18 17 16 20 20 O 1.42103 * 108.57903 * 65.51690 * 18 17 16 21 21 C 1.81403 * 101.92154 * 180.02562 * 18 17 16 22 22 C 1.53009 * 117.49605 * 253.74805 * 21 18 17 23 23 C 1.53006 * 117.50049 * 185.09125 * 21 18 17 24 24 N 1.30040 * 107.62165 * 359.97438 * 16 15 14 25 25 O 1.21284 * 110.48001 * 359.97438 * 24 16 15 26 26 C 1.39032 * 119.94638 * 359.43864 * 13 12 11 27 27 H 0.97002 * 120.00082 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.97698 * 0.05005 * 10 9 7 29 29 H 1.08008 * 119.79379 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.82718 * 180.27634 * 12 11 10 31 31 H 1.09001 * 109.47273 * 30.00106 * 17 16 15 32 32 H 1.09003 * 109.47425 * 150.00596 * 17 16 15 33 33 H 1.08995 * 115.54988 * 39.41614 * 21 18 17 34 34 H 1.08991 * 117.49917 * 0.02562 * 22 21 18 35 35 H 1.09006 * 117.49395 * 145.01724 * 22 21 18 36 36 H 1.08997 * 117.49701 * 214.97973 * 23 21 18 37 37 H 1.09002 * 117.49632 * 359.97438 * 23 21 18 38 38 H 1.07997 * 120.20068 * 180.29773 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3752 2.1126 -1.3938 5 1 1.5015 2.6169 0.8113 6 1 3.5923 1.4099 0.5824 7 6 2.0080 -1.2118 -0.0005 8 1 1.5088 -2.1236 0.2923 9 6 3.3689 -1.2424 -0.3845 10 6 3.8624 -0.3097 -1.3166 11 6 5.1878 -0.3425 -1.6888 12 6 6.0443 -1.2850 -1.1478 13 6 5.5705 -2.2235 -0.2247 14 6 6.4906 -3.2313 0.3441 15 7 7.7759 -3.3689 0.0720 16 6 8.1922 -4.4055 0.8160 17 6 9.5918 -4.9625 0.8620 18 16 9.7690 -6.2568 -0.3964 19 8 8.9209 -7.3434 -0.0510 20 8 9.6445 -5.6603 -1.6802 21 6 11.4924 -6.7729 -0.1631 22 6 12.5103 -6.3335 -1.2176 23 6 12.0631 -7.7958 -1.1474 24 7 7.1697 -4.8415 1.4908 25 8 6.1826 -4.1838 1.2378 26 6 4.2351 -2.2039 0.1617 27 1 -0.4850 0.8401 0.0004 28 1 3.2011 0.4320 -1.7397 29 1 5.5623 0.3751 -2.4039 30 1 7.0830 -1.2992 -1.4431 31 1 10.3073 -4.1640 0.6654 32 1 9.7820 -5.3861 1.8482 33 1 11.8310 -6.8268 0.8716 34 1 12.1445 -5.7342 -2.0512 35 1 13.5187 -6.0988 -0.8766 36 1 12.7773 -8.5225 -0.7604 37 1 11.4028 -8.1591 -1.9350 38 1 3.8661 -2.9234 0.8776 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350991099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:44 Heat of formation + Delta-G solvation = 52.262081 kcal Electronic energy + Delta-G solvation = -25093.863241 eV Core-core repulsion = 21226.188354 eV Total energy + Delta-G solvation = -3867.674887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.35899 -38.07322 -37.68863 -37.11558 -36.32396 -35.99949 -34.09765 -33.03948 -30.59266 -30.43670 -29.29224 -25.42826 -24.32056 -24.13467 -23.15028 -22.81334 -20.88213 -20.62127 -19.18334 -18.21392 -18.13670 -17.56903 -17.00815 -16.39790 -16.21874 -16.01206 -15.50420 -15.02413 -14.75237 -14.40358 -13.96207 -13.81590 -13.54117 -12.95680 -12.82123 -12.46052 -12.35531 -12.30557 -12.25781 -12.21311 -12.13120 -11.87245 -11.65321 -11.61754 -11.31520 -11.11154 -11.00701 -10.90164 -10.79242 -10.57241 -10.07750 -9.89327 -9.81547 -9.31012 -7.96696 -7.80386 -7.08181 -4.64999 -0.50867 0.96065 1.98627 2.29825 2.41168 2.64192 2.84344 2.98029 3.01877 3.09583 3.12989 3.22296 3.51779 3.68734 3.85960 3.90008 4.07262 4.24624 4.32226 4.33570 4.65060 4.73730 4.96320 5.01106 5.17964 5.25102 5.26922 5.41321 5.74616 5.82702 5.96614 6.10813 6.27071 6.48879 6.61116 6.82355 7.09240 7.28552 7.41165 7.61488 7.76714 8.18328 8.25534 8.39854 8.61389 9.93595 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.031419 B = 0.002465 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.954136 B =11356.834160 C =11736.957715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.083 3.917 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.441 4.441 8 H 0.096 0.904 9 C 0.084 3.916 10 C -0.210 4.210 11 C -0.082 4.082 12 C -0.184 4.184 13 C -0.016 4.016 14 C 0.268 3.732 15 N -0.479 5.479 16 C 0.159 3.841 17 C -0.513 4.513 18 S 2.449 3.551 19 O -0.919 6.919 20 O -0.913 6.913 21 C -0.675 4.675 22 C -0.126 4.126 23 C -0.123 4.123 24 N -0.374 5.374 25 O 0.090 5.910 26 C -0.157 4.157 27 H 0.288 0.712 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.604 -7.855 0.414 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.469 4.469 8 H 0.114 0.886 9 C 0.081 3.919 10 C -0.230 4.230 11 C -0.100 4.100 12 C -0.205 4.205 13 C -0.019 4.019 14 C 0.053 3.947 15 N -0.212 5.212 16 C -0.114 4.114 17 C -0.640 4.640 18 S 2.627 3.373 19 O -0.916 6.916 20 O -0.910 6.910 21 C -0.783 4.783 22 C -0.164 4.164 23 C -0.161 4.161 24 N -0.082 5.082 25 O 0.028 5.972 26 C -0.179 4.179 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.180 0.820 32 H 0.172 0.828 33 H 0.179 0.821 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.184 -8.684 0.231 22.896 hybrid contribution 0.687 1.139 0.925 1.620 sum 21.871 -7.546 1.156 23.165 Atomic orbital electron populations 1.69684 1.08114 1.30551 1.33922 1.26173 0.94775 1.01793 0.90925 0.86347 0.81429 0.79740 0.79060 1.19362 1.21520 1.16557 1.19494 0.92737 0.96411 1.38291 0.88642 1.17582 0.93126 0.90877 0.90312 1.21304 0.95728 1.03823 1.02116 1.20556 0.93466 0.97362 0.98615 1.20408 0.99393 0.98513 1.02184 1.17111 0.90773 0.93519 1.00449 1.27023 0.90135 0.90177 0.87328 1.72150 1.08233 1.16669 1.24190 1.24042 0.95812 0.95102 0.96475 1.28649 0.95688 1.18852 1.20849 1.07423 0.76851 0.76471 0.76601 1.93624 1.62403 1.51228 1.84339 1.93630 1.84738 1.77373 1.35259 1.32216 1.21549 1.18563 1.05973 1.22978 0.98040 0.97991 0.97380 1.22823 1.02481 0.93026 0.97774 1.74631 0.94798 1.17108 1.21660 1.85416 1.30705 1.34035 1.47071 1.21245 0.90632 1.03363 1.02627 0.90173 0.87469 0.87493 0.86865 0.82024 0.82762 0.82135 0.85882 0.86720 0.86556 0.87223 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.21 13.93 55.55 0.77 -19.44 16 2 C 0.08 2.06 5.40 -17.35 -0.09 1.96 16 3 Si 0.91 19.34 24.52 -169.99 -4.17 15.18 16 4 H -0.27 -5.48 6.71 56.52 0.38 -5.10 16 5 H -0.29 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.24 -5.25 6.86 56.52 0.39 -4.87 16 7 C -0.44 -11.16 9.57 -37.73 -0.36 -11.53 16 8 H 0.10 2.53 8.06 -52.49 -0.42 2.10 16 9 C 0.08 1.98 5.10 -106.87 -0.55 1.44 16 10 C -0.21 -4.65 7.17 -38.81 -0.28 -4.92 16 11 C -0.08 -1.63 10.01 -39.73 -0.40 -2.03 16 12 C -0.18 -3.69 9.71 -38.91 -0.38 -4.07 16 13 C -0.02 -0.33 5.87 -105.05 -0.62 -0.95 16 14 C 0.27 5.31 8.01 -13.85 -0.11 5.20 16 15 N -0.48 -9.04 11.24 -10.17 -0.11 -9.16 16 16 C 0.16 2.67 7.46 -156.55 -1.17 1.50 16 17 C -0.51 -5.46 6.43 36.01 0.23 -5.23 16 18 S 2.45 27.90 5.09 -107.50 -0.55 27.35 16 19 O -0.92 -13.92 18.10 -57.83 -1.05 -14.97 16 20 O -0.91 -13.37 17.25 -57.83 -1.00 -14.36 16 21 C -0.67 -4.37 6.25 -26.72 -0.17 -4.53 16 22 C -0.13 -0.69 10.13 -26.69 -0.27 -0.96 16 23 C -0.12 -0.72 10.30 -26.69 -0.27 -1.00 16 24 N -0.37 -6.87 12.15 31.18 0.38 -6.49 16 25 O 0.09 1.73 11.12 16.68 0.19 1.92 16 26 C -0.16 -3.45 9.47 -38.45 -0.36 -3.81 16 27 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 28 H 0.11 2.34 4.72 -52.48 -0.25 2.09 16 29 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.11 2.11 7.86 -52.49 -0.41 1.69 16 31 H 0.16 1.21 8.14 -51.92 -0.42 0.78 16 32 H 0.15 1.11 8.14 -51.92 -0.42 0.68 16 33 H 0.16 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 0.74 7.58 -51.93 -0.39 0.35 16 35 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.12 2.41 7.94 -52.49 -0.42 1.99 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -32.42 346.29 -9.13 -41.55 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.02 Total: 2.12 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -4.79 Total: -28.92 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 1.04 Total: -35.09 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -1.86 Total: -27.42 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.17 Total: 15.18 kcal Atomic # 16 Polarization: 27.90 SS G_CDS: -0.55 Total: 27.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.42 -9.13 -41.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350991099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.817 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds