Wall clock time and date at job start Tue Mar 31 2020 18:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48497 * 109.47186 * 275.41708 * 3 2 1 5 5 H 1.48499 * 109.47170 * 35.41447 * 3 2 1 6 6 H 1.48494 * 109.46990 * 155.41736 * 3 2 1 7 7 C 1.39927 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99642 * 341.72876 * 7 2 1 9 9 C 1.41434 * 120.00006 * 161.73288 * 7 2 1 10 10 C 1.40794 * 120.17686 * 330.16780 * 9 7 2 11 11 C 1.37705 * 120.03807 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41497 * 359.72345 * 11 10 9 13 13 C 1.39900 * 120.35396 * 0.56191 * 12 11 10 14 14 C 1.47848 * 120.02622 * 179.71379 * 13 12 11 15 15 N 1.32099 * 126.67395 * 359.72585 * 14 13 12 16 16 C 1.34214 * 105.54714 * 180.02562 * 15 14 13 17 17 C 1.50699 * 126.18827 * 180.02562 * 16 15 14 18 18 S 1.81399 * 109.46944 * 269.99881 * 17 16 15 19 19 O 1.42103 * 108.58236 * 294.48853 * 18 17 16 20 20 O 1.42103 * 108.57903 * 65.51690 * 18 17 16 21 21 C 1.81403 * 101.92154 * 180.02562 * 18 17 16 22 22 C 1.53009 * 117.49605 * 253.74805 * 21 18 17 23 23 C 1.53006 * 117.50049 * 185.09125 * 21 18 17 24 24 N 1.30040 * 107.62165 * 359.97438 * 16 15 14 25 25 O 1.21284 * 110.48001 * 359.97438 * 24 16 15 26 26 C 1.39032 * 119.94638 * 359.43864 * 13 12 11 27 27 H 0.97002 * 120.00082 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.97698 * 0.05005 * 10 9 7 29 29 H 1.08008 * 119.79379 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.82718 * 180.27634 * 12 11 10 31 31 H 1.09001 * 109.47273 * 30.00106 * 17 16 15 32 32 H 1.09003 * 109.47425 * 150.00596 * 17 16 15 33 33 H 1.08995 * 115.54988 * 39.41614 * 21 18 17 34 34 H 1.08991 * 117.49917 * 0.02562 * 22 21 18 35 35 H 1.09006 * 117.49395 * 145.01724 * 22 21 18 36 36 H 1.08997 * 117.49701 * 214.97973 * 23 21 18 37 37 H 1.09002 * 117.49632 * 359.97438 * 23 21 18 38 38 H 1.07997 * 120.20068 * 180.29773 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3752 2.1126 -1.3938 5 1 1.5015 2.6169 0.8113 6 1 3.5923 1.4099 0.5824 7 6 2.0080 -1.2118 -0.0005 8 1 1.5088 -2.1236 0.2923 9 6 3.3689 -1.2424 -0.3845 10 6 3.8624 -0.3097 -1.3166 11 6 5.1878 -0.3425 -1.6888 12 6 6.0443 -1.2850 -1.1478 13 6 5.5705 -2.2235 -0.2247 14 6 6.4906 -3.2313 0.3441 15 7 7.7759 -3.3689 0.0720 16 6 8.1922 -4.4055 0.8160 17 6 9.5918 -4.9625 0.8620 18 16 9.7690 -6.2568 -0.3964 19 8 8.9209 -7.3434 -0.0510 20 8 9.6445 -5.6603 -1.6802 21 6 11.4924 -6.7729 -0.1631 22 6 12.5103 -6.3335 -1.2176 23 6 12.0631 -7.7958 -1.1474 24 7 7.1697 -4.8415 1.4908 25 8 6.1826 -4.1838 1.2378 26 6 4.2351 -2.2039 0.1617 27 1 -0.4850 0.8401 0.0004 28 1 3.2011 0.4320 -1.7397 29 1 5.5623 0.3751 -2.4039 30 1 7.0830 -1.2992 -1.4431 31 1 10.3073 -4.1640 0.6654 32 1 9.7820 -5.3861 1.8482 33 1 11.8310 -6.8268 0.8716 34 1 12.1445 -5.7342 -2.0512 35 1 13.5187 -6.0988 -0.8766 36 1 12.7773 -8.5225 -0.7604 37 1 11.4028 -8.1591 -1.9350 38 1 3.8661 -2.9234 0.8776 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350991099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:43 Heat of formation + Delta-G solvation = 28.083128 kcal Electronic energy + Delta-G solvation = -25094.911719 eV Core-core repulsion = 21226.188354 eV Total energy + Delta-G solvation = -3868.723365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.79345 -39.79200 -38.41192 -37.84720 -37.47508 -37.19161 -35.81784 -34.58402 -32.34268 -31.79893 -30.63374 -27.22481 -25.77133 -25.04275 -24.11671 -23.51106 -22.50003 -22.21967 -20.09427 -19.75386 -19.44834 -18.53022 -18.40837 -17.76247 -17.34893 -17.09017 -16.62215 -16.38066 -16.12036 -15.77438 -15.28936 -14.75578 -14.58924 -14.55887 -14.23603 -14.05579 -13.70557 -13.58975 -13.46413 -13.39882 -13.26949 -12.93007 -12.78365 -12.56202 -12.53549 -12.33981 -12.21710 -12.07785 -12.04260 -11.75595 -11.59876 -11.58097 -11.25697 -11.03064 -9.68486 -9.51259 -8.91021 -6.55491 -1.35633 -0.60837 0.56532 0.69686 1.22828 1.31132 1.43816 1.49064 1.52914 1.54193 1.92426 2.12637 2.22268 2.54265 2.55691 2.74635 3.02644 3.37376 3.46202 3.55335 3.71206 3.88503 3.94961 4.06015 4.23899 4.36955 4.45169 4.55239 4.60262 4.61225 4.67664 4.83841 4.88629 4.90567 5.05753 5.09350 5.36939 5.58910 5.69716 5.81368 6.04266 6.28132 6.59040 6.73720 6.79011 8.16907 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.031419 B = 0.002465 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.954136 B =11356.834160 C =11736.957715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.048 3.952 3 Si 0.960 3.040 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.479 4.479 8 H 0.060 0.940 9 C 0.070 3.930 10 C -0.215 4.215 11 C -0.077 4.077 12 C -0.168 4.168 13 C -0.019 4.019 14 C 0.255 3.745 15 N -0.483 5.483 16 C 0.163 3.837 17 C -0.515 4.515 18 S 2.434 3.566 19 O -0.972 6.972 20 O -0.960 6.960 21 C -0.648 4.648 22 C -0.120 4.120 23 C -0.135 4.135 24 N -0.390 5.390 25 O 0.074 5.926 26 C -0.171 4.171 27 H 0.296 0.704 28 H 0.112 0.888 29 H 0.150 0.850 30 H 0.135 0.865 31 H 0.199 0.801 32 H 0.193 0.807 33 H 0.202 0.798 34 H 0.113 0.887 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.098 0.902 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.574 -7.051 0.271 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.168 4.168 3 Si 0.783 3.217 4 H -0.173 1.173 5 H -0.205 1.205 6 H -0.171 1.171 7 C -0.508 4.508 8 H 0.078 0.922 9 C 0.068 3.932 10 C -0.235 4.235 11 C -0.095 4.095 12 C -0.189 4.189 13 C -0.022 4.022 14 C 0.039 3.961 15 N -0.217 5.217 16 C -0.111 4.111 17 C -0.643 4.643 18 S 2.618 3.382 19 O -0.969 6.969 20 O -0.957 6.957 21 C -0.761 4.761 22 C -0.157 4.157 23 C -0.173 4.173 24 N -0.101 5.101 25 O 0.016 5.984 26 C -0.192 4.192 27 H 0.106 0.894 28 H 0.130 0.870 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.217 0.783 32 H 0.211 0.789 33 H 0.219 0.781 34 H 0.131 0.869 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.117 0.883 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 26.067 -7.873 0.069 27.230 hybrid contribution -0.526 0.697 0.931 1.277 sum 25.541 -7.176 1.001 26.549 Atomic orbital electron populations 1.69716 1.09303 1.31745 1.36086 1.26865 0.95364 1.04316 0.90255 0.85561 0.79827 0.76256 0.80089 1.17272 1.20526 1.17138 1.19443 0.94054 0.95941 1.41388 0.92181 1.17692 0.92599 0.92000 0.90925 1.21485 0.97000 1.03364 1.01608 1.20974 0.92256 0.97662 0.98565 1.20805 1.00448 0.97201 1.00420 1.17232 0.90415 0.93985 1.00537 1.26909 0.90618 0.90476 0.88046 1.72146 1.07620 1.17523 1.24386 1.25030 0.97751 0.93792 0.94511 1.28987 0.92829 1.19655 1.22782 1.07396 0.79137 0.75775 0.75865 1.93566 1.65962 1.52607 1.84737 1.93573 1.86559 1.77948 1.37592 1.31805 1.16164 1.19417 1.08746 1.23237 0.98953 0.97234 0.96326 1.23148 1.02685 0.94137 0.97338 1.74628 0.95137 1.17475 1.22857 1.85405 1.31482 1.34211 1.47294 1.21277 0.91366 1.03447 1.03131 0.89360 0.86992 0.83282 0.84701 0.78337 0.78908 0.78086 0.86921 0.83362 0.83710 0.88307 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.53 13.93 21.82 0.30 -44.23 16 2 C 0.05 2.43 5.40 85.25 0.46 2.89 16 3 Si 0.96 39.61 24.52 68.60 1.68 41.29 16 4 H -0.25 -9.37 6.71 99.48 0.67 -8.71 16 5 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.25 -10.33 6.86 99.48 0.68 -9.64 16 7 C -0.48 -25.72 9.57 23.47 0.22 -25.50 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 9 C 0.07 3.41 5.10 -21.32 -0.11 3.30 16 10 C -0.21 -9.26 7.17 22.77 0.16 -9.10 16 11 C -0.08 -2.82 10.01 22.17 0.22 -2.60 16 12 C -0.17 -6.33 9.71 22.70 0.22 -6.11 16 13 C -0.02 -0.79 5.87 -20.14 -0.12 -0.91 16 14 C 0.25 10.06 8.01 87.32 0.70 10.76 16 15 N -0.48 -17.58 11.24 -302.78 -3.40 -20.99 16 16 C 0.16 5.23 7.46 138.52 1.03 6.27 16 17 C -0.52 -9.38 6.43 71.24 0.46 -8.92 16 18 S 2.43 51.89 5.09 -56.49 -0.29 51.60 16 19 O -0.97 -29.54 18.10 -127.37 -2.30 -31.84 16 20 O -0.96 -27.80 17.25 -127.37 -2.20 -29.99 16 21 C -0.65 -5.74 6.25 30.60 0.19 -5.55 16 22 C -0.12 -0.80 10.13 30.62 0.31 -0.49 16 23 C -0.13 -1.12 10.30 30.62 0.32 -0.81 16 24 N -0.39 -14.27 12.15 -58.66 -0.71 -14.98 16 25 O 0.07 2.90 11.12 69.75 0.78 3.67 16 26 C -0.17 -7.74 9.47 23.00 0.22 -7.52 16 27 H 0.30 13.97 8.30 -92.71 -0.77 13.20 16 28 H 0.11 4.71 4.72 -2.91 -0.01 4.69 16 29 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.14 4.54 7.86 -2.91 -0.02 4.51 16 31 H 0.20 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.19 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.20 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.11 1.06 7.58 -2.39 -0.02 1.04 16 35 H 0.15 0.07 8.14 -2.38 -0.02 0.06 16 36 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 38 H 0.11 5.04 7.94 -2.91 -0.02 5.02 16 Total: -1.00 -75.74 346.29 -0.81 -76.55 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.05 Total: 13.22 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 4.29 Total: -44.30 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -3.81 Total: -80.20 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -3.73 Total: -58.17 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.68 Total: 41.29 kcal Atomic # 16 Polarization: 51.89 SS G_CDS: -0.29 Total: 51.60 kcal Total: -75.74 -0.81 -76.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350991099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.633 kcal (2) G-P(sol) polarization free energy of solvation -75.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds