Wall clock time and date at job start Tue Mar 31 2020 17:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46664 * 2 1 4 4 C 1.50706 * 109.47348 * 119.99447 * 2 1 3 5 5 H 1.07995 * 119.99908 * 120.00262 * 4 2 1 6 6 C 1.37877 * 119.99870 * 300.00762 * 4 2 1 7 7 N 1.31516 * 119.99922 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99807 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47031 * 119.99706 * 8 6 4 11 11 H 1.48497 * 109.46799 * 239.99269 * 8 6 4 12 12 N 1.46500 * 109.47356 * 239.99826 * 2 1 3 13 13 S 1.65595 * 120.00061 * 94.99830 * 12 2 1 14 14 O 1.42107 * 106.40422 * 311.46037 * 13 12 2 15 15 O 1.42097 * 106.40240 * 178.53828 * 13 12 2 16 16 C 1.76200 * 107.22213 * 64.99741 * 13 12 2 17 17 C 1.38260 * 119.99586 * 89.99481 * 16 13 12 18 18 C 1.38212 * 119.99650 * 179.72257 * 17 16 13 19 19 C 1.38254 * 120.00319 * 0.26336 * 18 17 16 20 20 C 1.38216 * 119.99725 * 359.97438 * 19 18 17 21 21 S 1.76199 * 119.99946 * 179.97438 * 20 19 18 22 22 N 1.65597 * 107.21853 * 90.00301 * 21 20 19 23 23 O 1.42101 * 106.40495 * 203.54110 * 21 20 19 24 24 O 1.42101 * 106.40402 * 336.46077 * 21 20 19 25 25 C 1.38209 * 120.00269 * 270.25850 * 16 13 12 26 26 H 1.09004 * 109.46606 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47492 * 299.99888 * 1 2 3 28 28 H 1.09000 * 109.47274 * 60.00924 * 1 2 3 29 29 H 0.97005 * 119.99747 * 179.97438 * 7 6 4 30 30 H 0.96997 * 119.99603 * 274.99450 * 12 2 1 31 31 H 1.08002 * 120.00476 * 0.02562 * 17 16 13 32 32 H 1.07999 * 119.99941 * 180.27784 * 18 17 16 33 33 H 1.07997 * 120.00472 * 180.02562 * 19 18 17 34 34 H 0.97003 * 120.00410 * 359.97438 * 22 21 20 35 35 H 0.97005 * 120.00263 * 180.02562 * 22 21 20 36 36 H 1.07999 * 119.99972 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9433 0.8303 2.6033 8 14 2.3213 -1.1201 4.0081 9 1 3.1455 -2.2873 3.6039 10 1 3.1465 -0.1870 4.8165 11 1 1.1660 -1.5863 4.8162 12 7 2.0184 -0.6906 -1.1961 13 16 2.4122 0.1771 -2.5504 14 8 1.3246 1.0592 -2.7922 15 8 2.8777 -0.7636 -3.5084 16 6 3.7927 1.1911 -2.1372 17 6 5.0783 0.7156 -2.3181 18 6 6.1612 1.5131 -1.9994 19 6 5.9589 2.7842 -1.4946 20 6 4.6736 3.2576 -1.3092 21 16 4.4157 4.8773 -0.6652 22 7 4.3473 5.9127 -1.9557 23 8 3.1196 4.8759 -0.0827 24 8 5.5921 5.2139 0.0574 25 6 3.5904 2.4596 -1.6272 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8901 29 1 0.7086 1.1615 3.4843 30 1 2.1111 -1.6562 -1.1947 31 1 5.2364 -0.2771 -2.7130 32 1 7.1655 1.1434 -2.1449 33 1 6.8050 3.4075 -1.2459 34 1 4.4456 5.5705 -2.8580 35 1 4.2097 6.8618 -1.8093 36 1 2.5861 2.8292 -1.4815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351530153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:41 Heat of formation + Delta-G solvation = -121.419074 kcal Electronic energy + Delta-G solvation = -25230.925784 eV Core-core repulsion = 21355.330373 eV Total energy + Delta-G solvation = -3875.595411 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.31323 -37.15062 -36.87945 -35.81686 -35.51430 -35.44091 -33.33601 -32.23621 -31.65975 -31.40934 -28.32604 -25.22969 -23.71398 -23.40057 -21.00769 -20.05724 -19.23047 -18.37690 -17.50817 -17.46230 -17.01506 -16.28241 -16.19386 -15.97270 -15.42356 -15.34507 -14.96120 -14.47026 -14.14355 -13.61006 -13.34237 -12.69297 -12.55894 -12.46203 -12.22242 -12.18876 -12.05106 -11.90368 -11.77648 -11.75006 -11.61609 -11.19138 -11.10391 -11.01707 -10.63538 -10.62773 -10.57325 -10.30491 -10.15608 -9.83039 -9.42387 -9.22004 -8.66475 -8.35765 -6.13639 -4.23398 0.25470 0.49574 0.79652 0.95098 2.88222 3.16153 3.23404 3.31626 3.33757 3.56480 3.65255 4.12775 4.29579 4.33771 4.68441 4.70888 4.81236 4.85001 5.17662 5.27670 5.38731 5.59987 5.71627 5.82358 5.87550 5.93828 6.24394 6.52242 6.78938 6.84913 7.03008 7.06510 7.54583 7.66459 7.75246 8.01664 8.23419 8.79516 9.43486 10.91746 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.005722 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.626883 B = 4892.243121 C = 6234.979053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.271 3.729 3 H 0.042 0.958 4 C -0.531 4.531 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.880 5.880 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -1.096 6.096 13 S 2.687 3.313 14 O -0.956 6.956 15 O -0.979 6.979 16 C -0.688 4.688 17 C 0.039 3.961 18 C -0.163 4.163 19 C 0.027 3.973 20 C -0.697 4.697 21 S 2.699 3.301 22 N -1.252 6.252 23 O -0.945 6.945 24 O -0.964 6.964 25 C 0.089 3.911 26 H 0.033 0.967 27 H 0.093 0.907 28 H 0.026 0.974 29 H 0.266 0.734 30 H 0.411 0.589 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.416 0.584 35 H 0.420 0.580 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 6.162 -10.887 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.167 3.833 3 H 0.059 0.941 4 C -0.570 4.570 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.517 5.517 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.858 5.858 13 S 2.774 3.226 14 O -0.946 6.946 15 O -0.969 6.969 16 C -0.773 4.773 17 C 0.020 3.980 18 C -0.183 4.183 19 C 0.008 3.992 20 C -0.785 4.785 21 S 2.787 3.213 22 N -0.926 5.926 23 O -0.934 6.934 24 O -0.953 6.953 25 C 0.068 3.932 26 H 0.052 0.948 27 H 0.112 0.888 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.245 0.755 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.243 0.757 35 H 0.250 0.750 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.945 6.583 -10.475 15.267 hybrid contribution 1.091 -0.870 0.617 1.526 sum 10.036 5.712 -9.858 15.183 Atomic orbital electron populations 1.22240 0.97794 1.00040 1.01718 1.18621 0.91739 0.92144 0.80780 0.94076 1.21273 1.32445 1.13418 0.89907 0.91705 1.24932 0.94840 0.94973 0.99097 1.69885 1.35594 1.22222 1.24037 0.86443 0.78698 0.79564 0.82718 1.19760 1.20865 1.20785 1.55567 1.80404 1.18503 1.31312 1.02067 0.73765 0.73549 0.73215 1.93590 1.49859 1.66975 1.84183 1.93529 1.82467 1.61433 1.59435 1.31493 1.17737 1.11017 1.17006 1.21275 0.90898 0.98738 0.87094 1.21384 0.99669 0.94811 1.02388 1.21207 0.95086 0.95567 0.87378 1.30702 1.00344 1.24998 1.22475 1.01730 0.74365 0.72763 0.72410 1.53111 1.93753 1.21918 1.23840 1.93685 1.39941 1.85772 1.74000 1.93591 1.50039 1.82673 1.69013 1.20834 0.99165 0.90593 0.82567 0.94799 0.88803 0.95457 0.92411 0.75454 0.83454 0.84061 0.83484 0.75730 0.74992 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.29 37.16 0.35 -3.44 16 2 C 0.27 6.45 2.76 -69.08 -0.19 6.25 16 3 H 0.04 1.04 7.21 -51.93 -0.37 0.66 16 4 C -0.53 -13.63 8.76 -34.44 -0.30 -13.93 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.36 11.32 55.43 0.63 -23.73 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -1.10 -21.34 5.46 -5.88 -0.03 -21.37 16 13 S 2.69 48.19 5.65 -107.50 -0.61 47.58 16 14 O -0.96 -19.41 16.55 -57.17 -0.95 -20.36 16 15 O -0.98 -17.80 17.28 -57.17 -0.99 -18.79 16 16 C -0.69 -11.17 5.82 -39.58 -0.23 -11.40 16 17 C 0.04 0.53 9.52 -39.58 -0.38 0.15 16 18 C -0.16 -1.85 10.05 -39.58 -0.40 -2.25 16 19 C 0.03 0.32 9.52 -39.58 -0.38 -0.06 16 20 C -0.70 -9.76 5.94 -39.58 -0.24 -9.99 16 21 S 2.70 35.71 6.28 -107.50 -0.68 35.04 16 22 N -1.25 -9.94 9.55 60.35 0.58 -9.37 16 23 O -0.94 -16.86 17.28 -57.17 -0.99 -17.85 16 24 O -0.96 -14.66 17.28 -57.17 -0.99 -15.64 16 25 C 0.09 1.46 8.36 -39.59 -0.33 1.13 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.03 0.61 7.64 -51.93 -0.40 0.21 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.41 7.15 8.83 -34.47 -0.30 6.85 16 31 H 0.15 1.68 7.62 -52.49 -0.40 1.28 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.15 1.34 7.62 -52.49 -0.40 0.94 16 34 H 0.42 2.25 8.92 -34.47 -0.31 1.94 16 35 H 0.42 2.50 8.96 -34.47 -0.31 2.19 16 36 H 0.16 2.72 7.18 -52.49 -0.38 2.34 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -36.48 335.21 -9.75 -46.23 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.57 Total: 9.55 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: -2.19 Total: -31.90 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 1.17 Total: -54.47 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -3.91 Total: -72.64 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 83.90 SS G_CDS: -1.28 Total: 82.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.48 -9.75 -46.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351530153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.187 kcal (2) G-P(sol) polarization free energy of solvation -36.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds