Wall clock time and date at job start Tue Mar 31 2020 17:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46664 * 2 1 4 4 C 1.50706 * 109.47348 * 119.99447 * 2 1 3 5 5 H 1.07995 * 119.99908 * 120.00262 * 4 2 1 6 6 C 1.37877 * 119.99870 * 300.00762 * 4 2 1 7 7 N 1.31516 * 119.99922 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99807 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47031 * 119.99706 * 8 6 4 11 11 H 1.48497 * 109.46799 * 239.99269 * 8 6 4 12 12 N 1.46500 * 109.47356 * 239.99826 * 2 1 3 13 13 S 1.65595 * 120.00061 * 94.99830 * 12 2 1 14 14 O 1.42107 * 106.40422 * 311.46037 * 13 12 2 15 15 O 1.42097 * 106.40240 * 178.53828 * 13 12 2 16 16 C 1.76200 * 107.22213 * 64.99741 * 13 12 2 17 17 C 1.38260 * 119.99586 * 89.99481 * 16 13 12 18 18 C 1.38212 * 119.99650 * 179.72257 * 17 16 13 19 19 C 1.38254 * 120.00319 * 0.26336 * 18 17 16 20 20 C 1.38216 * 119.99725 * 359.97438 * 19 18 17 21 21 S 1.76199 * 119.99946 * 179.97438 * 20 19 18 22 22 N 1.65597 * 107.21853 * 90.00301 * 21 20 19 23 23 O 1.42101 * 106.40495 * 203.54110 * 21 20 19 24 24 O 1.42101 * 106.40402 * 336.46077 * 21 20 19 25 25 C 1.38209 * 120.00269 * 270.25850 * 16 13 12 26 26 H 1.09004 * 109.46606 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47492 * 299.99888 * 1 2 3 28 28 H 1.09000 * 109.47274 * 60.00924 * 1 2 3 29 29 H 0.97005 * 119.99747 * 179.97438 * 7 6 4 30 30 H 0.96997 * 119.99603 * 274.99450 * 12 2 1 31 31 H 1.08002 * 120.00476 * 0.02562 * 17 16 13 32 32 H 1.07999 * 119.99941 * 180.27784 * 18 17 16 33 33 H 1.07997 * 120.00472 * 180.02562 * 19 18 17 34 34 H 0.97003 * 120.00410 * 359.97438 * 22 21 20 35 35 H 0.97005 * 120.00263 * 180.02562 * 22 21 20 36 36 H 1.07999 * 119.99972 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9433 0.8303 2.6033 8 14 2.3213 -1.1201 4.0081 9 1 3.1455 -2.2873 3.6039 10 1 3.1465 -0.1870 4.8165 11 1 1.1660 -1.5863 4.8162 12 7 2.0184 -0.6906 -1.1961 13 16 2.4122 0.1771 -2.5504 14 8 1.3246 1.0592 -2.7922 15 8 2.8777 -0.7636 -3.5084 16 6 3.7927 1.1911 -2.1372 17 6 5.0783 0.7156 -2.3181 18 6 6.1612 1.5131 -1.9994 19 6 5.9589 2.7842 -1.4946 20 6 4.6736 3.2576 -1.3092 21 16 4.4157 4.8773 -0.6652 22 7 4.3473 5.9127 -1.9557 23 8 3.1196 4.8759 -0.0827 24 8 5.5921 5.2139 0.0574 25 6 3.5904 2.4596 -1.6272 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8901 29 1 0.7086 1.1615 3.4843 30 1 2.1111 -1.6562 -1.1947 31 1 5.2364 -0.2771 -2.7130 32 1 7.1655 1.1434 -2.1449 33 1 6.8050 3.4075 -1.2459 34 1 4.4456 5.5705 -2.8580 35 1 4.2097 6.8618 -1.8093 36 1 2.5861 2.8292 -1.4815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351530153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:40 Heat of formation + Delta-G solvation = -153.821799 kcal Electronic energy + Delta-G solvation = -25232.330871 eV Core-core repulsion = 21355.330373 eV Total energy + Delta-G solvation = -3877.000498 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37342 -38.40949 -38.31986 -37.28709 -37.01745 -36.97741 -34.14802 -34.13450 -32.73937 -32.46731 -30.16654 -27.24669 -24.78916 -24.50500 -22.87901 -21.22512 -20.38748 -19.70054 -19.12036 -18.43738 -18.02664 -17.95425 -17.40307 -17.25348 -16.95815 -16.47933 -16.40388 -15.89071 -15.31109 -15.12080 -14.56632 -14.42876 -14.10732 -13.66345 -13.56888 -13.50929 -13.31608 -13.29912 -13.26569 -13.15329 -13.11127 -13.02616 -12.86289 -12.37180 -12.25085 -12.21215 -12.02610 -11.86414 -11.41958 -11.12438 -10.93992 -10.62238 -10.44667 -10.15585 -8.14039 -6.29742 -0.79233 -0.64890 -0.49652 -0.22645 1.42959 1.45173 1.55629 1.83991 2.08130 2.19943 2.44091 2.59809 2.73301 3.15728 3.18118 3.47991 3.63024 3.79352 3.84538 4.22922 4.30302 4.46796 4.56768 4.66272 4.83122 4.89202 4.95229 5.09166 5.14253 5.22986 5.53994 5.57513 5.72121 6.02552 6.05641 6.31130 6.39147 6.81977 7.40559 8.91266 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.005722 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.626883 B = 4892.243121 C = 6234.979053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.274 3.726 3 H 0.022 0.978 4 C -0.538 4.538 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.913 5.913 8 Si 0.959 3.041 9 H -0.261 1.261 10 H -0.285 1.285 11 H -0.280 1.280 12 N -1.097 6.097 13 S 2.703 3.297 14 O -0.988 6.988 15 O -0.979 6.979 16 C -0.702 4.702 17 C 0.030 3.970 18 C -0.148 4.148 19 C 0.030 3.970 20 C -0.700 4.700 21 S 2.720 3.280 22 N -1.229 6.229 23 O -1.000 7.000 24 O -0.983 6.983 25 C 0.060 3.940 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.420 0.580 31 H 0.170 0.830 32 H 0.189 0.811 33 H 0.181 0.819 34 H 0.431 0.569 35 H 0.432 0.568 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.453 5.531 -11.552 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.169 3.831 3 H 0.040 0.960 4 C -0.578 4.578 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.552 5.552 8 Si 0.785 3.215 9 H -0.185 1.185 10 H -0.211 1.211 11 H -0.206 1.206 12 N -0.858 5.858 13 S 2.794 3.206 14 O -0.978 6.978 15 O -0.969 6.969 16 C -0.790 4.790 17 C 0.011 3.989 18 C -0.168 4.168 19 C 0.011 3.989 20 C -0.788 4.788 21 S 2.809 3.191 22 N -0.910 5.910 23 O -0.989 6.989 24 O -0.972 6.972 25 C 0.040 3.960 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.256 0.744 31 H 0.187 0.813 32 H 0.206 0.794 33 H 0.199 0.801 34 H 0.261 0.739 35 H 0.266 0.734 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.846 5.917 -11.174 17.326 hybrid contribution 0.281 -0.614 0.712 0.981 sum 12.127 5.303 -10.462 16.872 Atomic orbital electron populations 1.22153 0.98319 1.00189 1.00704 1.18313 0.91392 0.91494 0.81915 0.96013 1.21619 1.32067 1.13493 0.90595 0.90872 1.25732 0.95126 0.95633 1.02050 1.70026 1.36941 1.23712 1.24498 0.85483 0.78172 0.78674 0.79179 1.18457 1.21136 1.20605 1.55352 1.81043 1.19147 1.30305 1.01322 0.73730 0.73090 0.72508 1.93545 1.52142 1.67531 1.84550 1.93519 1.82531 1.61777 1.59120 1.31078 1.18083 1.10698 1.19170 1.21689 0.90193 1.00103 0.86909 1.21933 1.01111 0.93829 0.99881 1.21747 0.94891 0.96335 0.85886 1.30674 1.00858 1.24811 1.22492 1.00786 0.72963 0.72680 0.72697 1.52579 1.93251 1.21852 1.23354 1.93630 1.42546 1.86569 1.76137 1.93564 1.50239 1.82966 1.70402 1.20763 0.99228 0.91547 0.84485 0.93959 0.91173 0.95105 0.92581 0.74438 0.81294 0.79361 0.80131 0.73875 0.73428 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.59 9.29 71.98 0.67 -6.92 16 2 C 0.27 13.33 2.76 44.25 0.12 13.45 16 3 H 0.02 1.16 7.21 -2.39 -0.02 1.14 16 4 C -0.54 -27.68 8.76 25.60 0.22 -27.46 16 5 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 6 C 0.02 0.80 5.30 84.65 0.45 1.25 16 7 N -0.91 -51.84 11.32 21.45 0.24 -51.60 16 8 Si 0.96 42.06 29.54 68.60 2.03 44.08 16 9 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 N -1.10 -42.94 5.46 -172.52 -0.94 -43.88 16 13 S 2.70 97.41 5.65 -56.49 -0.32 97.09 16 14 O -0.99 -41.47 16.55 -128.00 -2.12 -43.59 16 15 O -0.98 -34.68 17.28 -128.00 -2.21 -36.90 16 16 C -0.70 -22.42 5.82 22.27 0.13 -22.29 16 17 C 0.03 0.73 9.52 22.27 0.21 0.95 16 18 C -0.15 -2.74 10.05 22.27 0.22 -2.52 16 19 C 0.03 0.62 9.52 22.27 0.21 0.83 16 20 C -0.70 -18.90 5.94 22.27 0.13 -18.77 16 21 S 2.72 71.09 6.28 -56.49 -0.35 70.74 16 22 N -1.23 -17.89 9.55 37.02 0.35 -17.53 16 23 O -1.00 -37.25 17.28 -128.00 -2.21 -39.46 16 24 O -0.98 -28.66 17.28 -128.00 -2.21 -30.87 16 25 C 0.06 2.02 8.36 22.27 0.19 2.20 16 26 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 28 H 0.03 1.43 7.64 -2.39 -0.02 1.42 16 29 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 30 H 0.42 14.44 8.83 -96.75 -0.85 13.58 16 31 H 0.17 3.28 7.62 -2.91 -0.02 3.26 16 32 H 0.19 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.18 2.47 7.62 -2.91 -0.02 2.44 16 34 H 0.43 3.87 8.92 -96.74 -0.86 3.00 16 35 H 0.43 4.49 8.96 -96.74 -0.87 3.62 16 36 H 0.14 5.12 7.18 -2.91 -0.02 5.10 16 Total: -1.00 -79.86 335.21 -6.60 -86.46 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -1.41 Total: 24.72 kcal Atomic # 6 Polarization: -61.83 SS G_CDS: 2.56 Total: -59.27 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -0.35 Total: -113.01 kcal Atomic # 8 Polarization: -142.06 SS G_CDS: -8.76 Total: -150.81 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 168.51 SS G_CDS: -0.67 Total: 167.83 kcal Total: -79.86 -6.60 -86.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351530153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.359 kcal (2) G-P(sol) polarization free energy of solvation -79.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds