Wall clock time and date at job start Tue Mar 31 2020 17:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48499 * 109.46938 * 269.99199 * 3 2 1 5 5 H 1.48493 * 109.47498 * 29.99746 * 3 2 1 6 6 H 1.48509 * 109.46786 * 149.99869 * 3 2 1 7 7 C 1.38946 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00070 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99637 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00409 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99476 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.46946 * 180.02562 * 12 10 9 14 14 S 1.65598 * 119.99862 * 164.99956 * 13 12 10 15 15 O 1.42104 * 104.27697 * 308.92945 * 14 13 12 16 16 O 1.42100 * 104.27537 * 181.07575 * 14 13 12 17 17 C 1.81395 * 104.44891 * 65.00122 * 14 13 12 18 18 C 1.50701 * 109.47179 * 179.97438 * 17 14 13 19 19 C 1.38425 * 120.02136 * 90.00100 * 18 17 14 20 20 F 1.35101 * 120.01402 * 359.70506 * 19 18 17 21 21 C 1.38476 * 119.97328 * 179.97438 * 19 18 17 22 22 C 1.38207 * 120.02410 * 0.02562 * 21 19 18 23 23 C 1.38207 * 120.05360 * 359.97438 * 22 21 19 24 24 C 1.38412 * 120.02814 * 269.97733 * 18 17 14 25 25 F 1.35096 * 120.01191 * 0.02562 * 24 18 17 26 26 H 0.97002 * 120.00476 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99823 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.46868 * 60.00682 * 12 10 9 29 29 H 1.09000 * 109.47257 * 299.99813 * 12 10 9 30 30 H 0.97003 * 119.99536 * 345.00426 * 13 12 10 31 31 H 1.09008 * 109.47052 * 60.00139 * 17 14 13 32 32 H 1.09006 * 109.47461 * 300.00005 * 17 14 13 33 33 H 1.08001 * 119.98752 * 179.97438 * 21 19 18 34 34 H 1.08000 * 119.97200 * 180.02562 * 22 21 19 35 35 H 1.07995 * 119.99247 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0016 14 16 1.6811 -7.5058 0.3735 15 8 0.9782 -7.3507 1.5988 16 8 2.8576 -8.2993 0.2992 17 6 0.5369 -7.9366 -0.9666 18 6 -0.0047 -9.3242 -0.7381 19 6 -1.1641 -9.5028 -0.0032 20 9 -1.8075 -8.4336 0.5145 21 6 -1.6612 -10.7783 0.2057 22 6 -0.9998 -11.8727 -0.3187 23 6 0.1579 -11.6956 -1.0526 24 6 0.6565 -10.4210 -1.2632 25 9 1.7882 -10.2481 -1.9805 26 1 -0.4851 0.8400 -0.0004 27 1 0.3534 -2.3907 0.0005 28 1 0.6170 -4.9209 -0.8886 29 1 0.6176 -4.9205 0.8914 30 1 3.1279 -5.8178 -0.2158 31 1 1.0653 -7.9055 -1.9195 32 1 -0.2869 -7.2230 -0.9845 33 1 -2.5655 -10.9180 0.7793 34 1 -1.3885 -12.8671 -0.1556 35 1 0.6741 -12.5515 -1.4615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352530501.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:58 Heat of formation + Delta-G solvation = -169.632107 kcal Electronic energy + Delta-G solvation = -26080.236876 eV Core-core repulsion = 21648.710405 eV Total energy + Delta-G solvation = -4431.526471 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.39978 -49.37174 -39.36338 -38.45935 -37.08835 -35.94868 -34.69677 -33.75675 -33.64472 -31.36820 -30.78814 -27.97188 -27.18174 -24.35247 -23.37361 -22.70942 -19.69759 -19.39918 -18.56684 -18.17735 -17.85198 -17.79911 -16.99621 -16.51216 -16.10395 -16.00074 -15.83635 -15.62976 -15.48716 -14.86348 -14.82778 -14.66110 -14.34510 -14.17680 -13.69522 -13.34224 -13.20302 -12.58041 -12.53977 -12.33683 -12.24006 -12.07619 -11.99010 -11.95499 -11.91742 -11.56050 -11.40689 -11.13357 -10.45457 -10.30960 -9.65719 -9.57064 -9.23198 -9.19468 -8.61678 -8.10210 -6.51838 -3.93554 -0.06285 0.47264 0.59706 2.68022 2.83676 3.11879 3.22527 3.28399 3.37377 3.53423 3.72257 3.82664 3.89976 3.97743 4.09839 4.28191 4.32814 4.63050 4.74286 4.85023 4.96780 5.14776 5.30173 5.31698 5.37549 5.42380 5.49713 5.64146 5.69800 5.80261 6.22420 6.24701 7.22820 7.46408 7.93178 8.45677 9.05243 9.38780 9.87453 10.65181 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.002709 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.857636 B =10333.487054 C =10917.318762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.435 3.565 11 O -0.588 6.588 12 C 0.100 3.900 13 N -1.096 6.096 14 S 2.613 3.387 15 O -0.943 6.943 16 O -0.947 6.947 17 C -0.596 4.596 18 C -0.165 4.165 19 C 0.146 3.854 20 F -0.116 7.116 21 C -0.163 4.163 22 C -0.054 4.054 23 C -0.164 4.164 24 C 0.144 3.856 25 F -0.118 7.118 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.428 0.572 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 -23.152 -3.508 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.188 5.188 10 C 0.219 3.781 11 O -0.473 6.473 12 C -0.030 4.030 13 N -0.860 5.860 14 S 2.703 3.297 15 O -0.932 6.932 16 O -0.938 6.938 17 C -0.721 4.721 18 C -0.168 4.168 19 C 0.125 3.875 20 F -0.094 7.094 21 C -0.182 4.182 22 C -0.072 4.072 23 C -0.183 4.183 24 C 0.124 3.876 25 F -0.096 7.096 26 H 0.084 0.916 27 H 0.229 0.771 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.267 0.733 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.305 -23.410 -2.734 24.398 hybrid contribution -0.201 1.443 -0.899 1.713 sum -6.507 -21.966 -3.633 23.196 Atomic orbital electron populations 1.69603 1.05993 1.28501 1.49578 1.25308 0.95672 0.99899 0.96831 0.85815 0.79280 0.80497 0.78457 1.20300 1.20803 1.19303 1.19740 0.93499 0.81993 1.48117 0.87665 1.41815 1.09401 1.04490 1.63066 1.19564 0.88339 0.84622 0.85580 1.90513 1.13648 1.86542 1.56642 1.21025 0.91547 0.87644 1.02806 1.55189 1.20164 1.22424 1.88255 1.05067 0.75259 0.73294 0.76120 1.93621 1.76046 1.84938 1.38623 1.93612 1.44467 1.68616 1.87057 1.29672 1.18647 1.00894 1.22915 1.19012 0.98446 0.93509 1.05851 1.17266 0.90596 0.84551 0.95095 1.91604 1.79902 1.53937 1.83931 1.21291 1.02895 0.90332 1.03669 1.20981 0.93088 0.99334 0.93803 1.21275 0.98554 0.95743 1.02684 1.17254 0.84013 0.93135 0.93231 1.91588 1.47236 1.96127 1.74621 0.91619 0.77100 0.90235 0.88510 0.73270 0.82973 0.83036 0.83188 0.83286 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.65 13.05 55.50 0.72 -22.92 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 10 C 0.43 9.91 7.85 -10.98 -0.09 9.82 16 11 O -0.59 -15.39 15.30 5.55 0.08 -15.30 16 12 C 0.10 1.68 6.61 -5.19 -0.03 1.65 16 13 N -1.10 -17.66 5.82 -11.65 -0.07 -17.73 16 14 S 2.61 38.77 5.44 -107.50 -0.58 38.19 16 15 O -0.94 -16.44 17.50 -57.54 -1.01 -17.45 16 16 O -0.95 -16.22 18.08 -57.54 -1.04 -17.26 16 17 C -0.60 -6.56 5.84 36.01 0.21 -6.35 16 18 C -0.16 -1.83 5.15 -104.49 -0.54 -2.36 16 19 C 0.15 1.51 7.24 -39.42 -0.29 1.23 16 20 F -0.12 -1.36 16.48 2.25 0.04 -1.32 16 21 C -0.16 -1.18 10.03 -39.50 -0.40 -1.58 16 22 C -0.05 -0.30 10.04 -39.60 -0.40 -0.70 16 23 C -0.16 -1.17 10.03 -39.50 -0.40 -1.57 16 24 C 0.14 1.48 7.24 -39.43 -0.29 1.20 16 25 F -0.12 -1.35 16.48 2.25 0.04 -1.31 16 26 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.40 9.07 7.90 -40.82 -0.32 8.75 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.10 1.52 7.69 -51.93 -0.40 1.12 16 30 H 0.43 7.30 7.67 -34.48 -0.26 7.04 16 31 H 0.15 1.38 7.64 -51.92 -0.40 0.99 16 32 H 0.15 1.38 7.65 -51.92 -0.40 0.98 16 33 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.15 0.32 8.06 -52.49 -0.42 -0.11 16 35 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -35.09 335.84 -7.27 -42.36 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -2.98 Total: 12.19 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.45 Total: -6.48 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.60 Total: -54.20 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -1.96 Total: -50.01 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.07 Total: -2.63 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 38.77 SS G_CDS: -0.58 Total: 38.19 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.09 -7.27 -42.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352530501.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.272 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds