Wall clock time and date at job start Tue Mar 31 2020 17:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48499 * 109.46938 * 269.99199 * 3 2 1 5 5 H 1.48493 * 109.47498 * 29.99746 * 3 2 1 6 6 H 1.48509 * 109.46786 * 149.99869 * 3 2 1 7 7 C 1.38946 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00070 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99637 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00409 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99476 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.46946 * 180.02562 * 12 10 9 14 14 S 1.65598 * 119.99862 * 164.99956 * 13 12 10 15 15 O 1.42104 * 104.27697 * 308.92945 * 14 13 12 16 16 O 1.42100 * 104.27537 * 181.07575 * 14 13 12 17 17 C 1.81395 * 104.44891 * 65.00122 * 14 13 12 18 18 C 1.50701 * 109.47179 * 179.97438 * 17 14 13 19 19 C 1.38425 * 120.02136 * 90.00100 * 18 17 14 20 20 F 1.35101 * 120.01402 * 359.70506 * 19 18 17 21 21 C 1.38476 * 119.97328 * 179.97438 * 19 18 17 22 22 C 1.38207 * 120.02410 * 0.02562 * 21 19 18 23 23 C 1.38207 * 120.05360 * 359.97438 * 22 21 19 24 24 C 1.38412 * 120.02814 * 269.97733 * 18 17 14 25 25 F 1.35096 * 120.01191 * 0.02562 * 24 18 17 26 26 H 0.97002 * 120.00476 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99823 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.46868 * 60.00682 * 12 10 9 29 29 H 1.09000 * 109.47257 * 299.99813 * 12 10 9 30 30 H 0.97003 * 119.99536 * 345.00426 * 13 12 10 31 31 H 1.09008 * 109.47052 * 60.00139 * 17 14 13 32 32 H 1.09006 * 109.47461 * 300.00005 * 17 14 13 33 33 H 1.08001 * 119.98752 * 179.97438 * 21 19 18 34 34 H 1.08000 * 119.97200 * 180.02562 * 22 21 19 35 35 H 1.07995 * 119.99247 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0016 14 16 1.6811 -7.5058 0.3735 15 8 0.9782 -7.3507 1.5988 16 8 2.8576 -8.2993 0.2992 17 6 0.5369 -7.9366 -0.9666 18 6 -0.0047 -9.3242 -0.7381 19 6 -1.1641 -9.5028 -0.0032 20 9 -1.8075 -8.4336 0.5145 21 6 -1.6612 -10.7783 0.2057 22 6 -0.9998 -11.8727 -0.3187 23 6 0.1579 -11.6956 -1.0526 24 6 0.6565 -10.4210 -1.2632 25 9 1.7882 -10.2481 -1.9805 26 1 -0.4851 0.8400 -0.0004 27 1 0.3534 -2.3907 0.0005 28 1 0.6170 -4.9209 -0.8886 29 1 0.6176 -4.9205 0.8914 30 1 3.1279 -5.8178 -0.2158 31 1 1.0653 -7.9055 -1.9195 32 1 -0.2869 -7.2230 -0.9845 33 1 -2.5655 -10.9180 0.7793 34 1 -1.3885 -12.8671 -0.1556 35 1 0.6741 -12.5515 -1.4615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352530501.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:57 Heat of formation + Delta-G solvation = -197.400462 kcal Electronic energy + Delta-G solvation = -26081.441003 eV Core-core repulsion = 21648.710405 eV Total energy + Delta-G solvation = -4432.730597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.16321 -50.14033 -40.29119 -39.97642 -38.35474 -37.21119 -36.36435 -35.43926 -34.37553 -33.34690 -31.38622 -28.82536 -28.69250 -26.18858 -24.01745 -23.38261 -21.45426 -20.59139 -20.08604 -19.27413 -19.13580 -18.55783 -18.06758 -17.52410 -17.33410 -17.05807 -16.71995 -16.64722 -16.44755 -16.40744 -16.16099 -16.01479 -15.55894 -15.38589 -14.86134 -14.34296 -14.10231 -13.92391 -13.83307 -13.61376 -13.37926 -13.30304 -13.27078 -13.17939 -12.92704 -12.83238 -12.61364 -12.45104 -12.33645 -12.13188 -11.56884 -10.79424 -10.49592 -10.08177 -9.98212 -9.86427 -8.50627 -6.00093 -1.12343 -0.14302 -0.11179 1.36362 1.42157 1.48674 1.55709 1.93061 2.24635 2.28274 2.53429 2.70036 2.92872 2.99665 3.10564 3.16637 3.28960 3.49006 3.77964 3.91585 4.04064 4.12877 4.21873 4.36031 4.40572 4.64444 4.68312 4.69150 4.90464 4.98458 5.12202 5.38891 5.65152 5.83255 5.96916 6.51293 7.05857 7.46123 7.99147 8.66195 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.002709 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.857636 B =10333.487054 C =10917.318762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.338 4.338 8 H 0.081 0.919 9 N -0.561 5.561 10 C 0.432 3.568 11 O -0.627 6.627 12 C 0.106 3.894 13 N -1.105 6.105 14 S 2.614 3.386 15 O -0.977 6.977 16 O -0.978 6.978 17 C -0.573 4.573 18 C -0.192 4.192 19 C 0.120 3.880 20 F -0.130 7.130 21 C -0.158 4.158 22 C -0.035 4.035 23 C -0.158 4.158 24 C 0.119 3.881 25 F -0.132 7.132 26 H 0.280 0.720 27 H 0.401 0.599 28 H 0.127 0.873 29 H 0.110 0.890 30 H 0.423 0.577 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.195 0.805 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 -24.991 -4.203 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.817 3.183 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.099 0.901 9 N -0.198 5.198 10 C 0.219 3.781 11 O -0.514 6.514 12 C -0.024 4.024 13 N -0.866 5.866 14 S 2.710 3.290 15 O -0.967 6.967 16 O -0.969 6.969 17 C -0.702 4.702 18 C -0.196 4.196 19 C 0.099 3.901 20 F -0.108 7.108 21 C -0.177 4.177 22 C -0.054 4.054 23 C -0.176 4.176 24 C 0.098 3.902 25 F -0.110 7.110 26 H 0.090 0.910 27 H 0.236 0.764 28 H 0.144 0.856 29 H 0.128 0.872 30 H 0.260 0.740 31 H 0.189 0.811 32 H 0.191 0.809 33 H 0.194 0.806 34 H 0.212 0.788 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.138 -25.233 -3.391 26.729 hybrid contribution 0.296 1.813 -0.704 1.967 sum -7.842 -23.420 -4.095 25.036 Atomic orbital electron populations 1.69654 1.06790 1.29590 1.49376 1.26050 0.96556 1.02431 0.95867 0.84920 0.77850 0.76780 0.78743 1.19418 1.19519 1.19921 1.19697 0.92862 0.83789 1.50436 0.90055 1.41853 1.09632 1.04496 1.63774 1.20549 0.88227 0.86071 0.83296 1.90486 1.15715 1.87515 1.57717 1.21099 0.91270 0.84319 1.05705 1.55213 1.19923 1.22800 1.88693 1.04877 0.75140 0.72392 0.76600 1.93568 1.76302 1.85098 1.41690 1.93564 1.46624 1.68856 1.87807 1.29384 1.17841 1.02174 1.20833 1.19123 0.99486 0.93381 1.07596 1.17648 0.91020 0.85440 0.95964 1.91563 1.80156 1.54827 1.84291 1.21736 1.03550 0.89373 1.03004 1.21545 0.91637 1.00818 0.91356 1.21726 0.98824 0.95223 1.01875 1.17646 0.84069 0.94337 0.94152 1.91550 1.48056 1.96297 1.75101 0.91044 0.76395 0.85561 0.87230 0.74012 0.81056 0.80912 0.80622 0.78796 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.92 13.05 21.66 0.28 -47.63 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 0.99 42.07 29.55 68.60 2.03 44.10 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.34 -18.78 9.68 84.04 0.81 -17.96 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.56 -27.87 5.29 -306.98 -1.62 -29.49 16 10 C 0.43 20.01 7.85 87.66 0.69 20.70 16 11 O -0.63 -33.87 15.30 -3.05 -0.05 -33.92 16 12 C 0.11 3.49 6.61 85.63 0.57 4.06 16 13 N -1.10 -35.85 5.82 -190.77 -1.11 -36.96 16 14 S 2.61 78.07 5.44 -56.49 -0.31 77.77 16 15 O -0.98 -34.57 17.50 -127.65 -2.23 -36.81 16 16 O -0.98 -34.42 18.08 -127.65 -2.31 -36.73 16 17 C -0.57 -11.94 5.84 71.24 0.42 -11.53 16 18 C -0.19 -4.01 5.15 -19.78 -0.10 -4.11 16 19 C 0.12 2.29 7.24 22.37 0.16 2.46 16 20 F -0.13 -2.92 16.48 44.97 0.74 -2.18 16 21 C -0.16 -1.78 10.03 22.32 0.22 -1.56 16 22 C -0.04 -0.25 10.04 22.25 0.22 -0.02 16 23 C -0.16 -1.75 10.03 22.32 0.22 -1.53 16 24 C 0.12 2.26 7.24 22.37 0.16 2.42 16 25 F -0.13 -2.93 16.48 44.97 0.74 -2.19 16 26 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 27 H 0.40 18.55 7.90 -92.71 -0.73 17.82 16 28 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.11 3.37 7.69 -2.39 -0.02 3.35 16 30 H 0.42 14.90 7.67 -96.74 -0.74 14.16 16 31 H 0.17 2.88 7.64 -2.39 -0.02 2.86 16 32 H 0.17 2.80 7.65 -2.39 -0.02 2.79 16 33 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.19 -0.38 8.06 -2.91 -0.02 -0.41 16 35 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -79.14 335.84 -0.28 -79.42 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.29 Total: 31.67 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 3.84 Total: -7.04 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -2.45 Total: -114.08 kcal Atomic # 8 Polarization: -102.87 SS G_CDS: -4.59 Total: -107.46 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 1.48 Total: -4.37 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 78.07 SS G_CDS: -0.31 Total: 77.77 kcal Total: -79.14 -0.28 -79.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352530501.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.978 kcal (2) G-P(sol) polarization free energy of solvation -79.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds