Wall clock time and date at job start Tue Mar 31 2020 18:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86789 * 120.00260 * 2 1 4 4 H 1.48501 * 109.47730 * 274.96580 * 3 2 1 5 5 H 1.48506 * 109.47154 * 34.96881 * 3 2 1 6 6 H 1.48503 * 109.47176 * 154.96371 * 3 2 1 7 7 C 1.39934 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99730 * 162.61835 * 7 2 1 9 9 C 1.41432 * 120.00183 * 342.61347 * 7 2 1 10 10 C 1.40797 * 120.17810 * 154.92930 * 9 7 2 11 11 C 1.37706 * 120.04273 * 179.97438 * 10 9 7 12 12 C 1.38368 * 120.40978 * 0.25479 * 11 10 9 13 13 C 1.39900 * 120.35656 * 359.49033 * 12 11 10 14 14 C 1.47848 * 120.02735 * 180.25855 * 13 12 11 15 15 N 1.32103 * 126.67073 * 359.96101 * 14 13 12 16 16 C 1.34215 * 105.54327 * 179.91514 * 15 14 13 17 17 C 1.50703 * 126.18499 * 180.08637 * 16 15 14 18 18 H 1.08994 * 109.64585 * 0.98701 * 17 16 15 19 19 C 1.53871 * 109.64745 * 240.55406 * 17 16 15 20 20 C 1.55049 * 106.62634 * 192.97209 * 19 17 16 21 21 S 1.83288 * 102.56621 * 42.43373 * 20 19 17 22 22 O 1.42099 * 109.35239 * 90.18781 * 21 20 19 23 23 O 1.42101 * 109.35583 * 223.25827 * 21 20 19 24 24 C 1.54170 * 109.64239 * 121.41618 * 17 16 15 25 25 N 1.30031 * 107.62501 * 0.34999 * 16 15 14 26 26 O 1.21295 * 110.47832 * 359.77702 * 25 16 15 27 27 C 1.39033 * 119.94597 * 0.50376 * 13 12 11 28 28 H 0.97005 * 120.00170 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.97539 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.79428 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.82175 * 179.74111 * 12 11 10 32 32 H 1.09004 * 110.03017 * 312.26272 * 19 17 16 33 33 H 1.09000 * 110.03060 * 73.63052 * 19 17 16 34 34 H 1.08992 * 110.79284 * 160.70203 * 20 19 17 35 35 H 1.09008 * 110.78782 * 284.16853 * 20 19 17 36 36 H 1.09000 * 110.31905 * 266.66172 * 24 17 16 37 37 H 1.09004 * 110.31944 * 28.85372 * 24 17 16 38 38 H 1.08000 * 120.19687 * 179.72766 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4962 2.6200 0.8025 6 1 3.5884 1.4120 0.5925 7 6 2.0078 -1.2119 -0.0005 8 1 3.0509 -1.2332 -0.2800 9 6 1.3490 -2.4089 0.3649 10 6 1.8188 -3.6486 -0.1094 11 6 1.1755 -4.8123 0.2486 12 6 0.0629 -4.7733 1.0703 13 6 -0.4152 -3.5514 1.5556 14 6 -1.6012 -3.5187 2.4377 15 7 -2.3076 -4.5566 2.8487 16 6 -3.2772 -4.0472 3.6244 17 6 -4.3496 -4.8300 4.3374 18 1 -4.2155 -5.8944 4.1451 19 6 -5.7347 -4.3844 3.8368 20 6 -6.7740 -4.9714 4.8264 21 16 -5.9875 -4.6721 6.4547 22 8 -6.3939 -3.4029 6.9478 23 8 -6.1347 -5.8278 7.2684 24 6 -4.2653 -4.5625 5.8533 25 7 -3.1273 -2.7557 3.6449 26 8 -2.1729 -2.4286 2.9718 27 6 0.2229 -2.3674 1.2035 28 1 -0.4850 0.8401 0.0004 29 1 2.6842 -3.6867 -0.7544 30 1 1.5391 -5.7610 -0.1179 31 1 -0.4367 -5.6915 1.3417 32 1 -5.7975 -3.2962 3.8315 33 1 -5.9121 -4.7731 2.8340 34 1 -7.7227 -4.4399 4.7516 35 1 -6.9126 -6.0388 4.6540 36 1 -3.6484 -5.3195 6.3375 37 1 -3.8612 -3.5675 6.0402 38 1 -0.1453 -1.4214 1.5723 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356021116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:32 Heat of formation + Delta-G solvation = 13.722000 kcal Electronic energy + Delta-G solvation = -25337.364988 eV Core-core repulsion = 21468.018877 eV Total energy + Delta-G solvation = -3869.346111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -45.11029 -37.85270 -37.70300 -37.31733 -36.31118 -34.98240 -33.91283 -32.46645 -30.42285 -29.91017 -29.26012 -26.31633 -25.51151 -23.91030 -23.48581 -21.81555 -20.88968 -19.86213 -19.17650 -17.89443 -17.63904 -17.36455 -17.04513 -16.46845 -15.96031 -15.53605 -14.92779 -14.86945 -14.73403 -14.49445 -14.20254 -13.63668 -13.02794 -12.86666 -12.77045 -12.68873 -12.61292 -12.43976 -12.31784 -12.15770 -12.06447 -11.58709 -11.51566 -11.24086 -11.15527 -11.12609 -10.96594 -10.70908 -10.68014 -10.60879 -10.00889 -9.90560 -9.86077 -9.32255 -7.71402 -7.70307 -6.96768 -4.58522 -0.31925 1.16738 2.03921 2.27058 2.63143 2.95772 2.99638 3.03946 3.14086 3.23399 3.25282 3.46707 3.79504 3.80255 3.87902 4.18257 4.22335 4.40785 4.42921 4.53328 4.60929 5.06930 5.10855 5.26088 5.37259 5.41909 5.50711 5.64283 5.96160 6.03620 6.20031 6.30222 6.55155 6.76540 6.84815 7.02703 7.14549 7.49824 7.63024 7.73345 7.92737 8.29465 8.49652 8.61186 8.64723 9.98452 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002638 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.799337 B =10611.112543 C =11577.289877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.457 4.457 8 H 0.084 0.916 9 C 0.101 3.899 10 C -0.198 4.198 11 C -0.097 4.097 12 C -0.187 4.187 13 C -0.037 4.037 14 C 0.273 3.727 15 N -0.496 5.496 16 C 0.168 3.832 17 C 0.018 3.982 18 H 0.123 0.877 19 C -0.116 4.116 20 C -0.584 4.584 21 S 2.396 3.604 22 O -0.931 6.931 23 O -0.937 6.937 24 C -0.593 4.593 25 N -0.396 5.396 26 O 0.081 5.919 27 C -0.111 4.111 28 H 0.285 0.715 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 -6.817 6.031 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.102 0.898 9 C 0.099 3.901 10 C -0.218 4.218 11 C -0.115 4.115 12 C -0.208 4.208 13 C -0.040 4.040 14 C 0.059 3.941 15 N -0.230 5.230 16 C -0.106 4.106 17 C -0.003 4.003 18 H 0.141 0.859 19 C -0.156 4.156 20 C -0.714 4.714 21 S 2.578 3.422 22 O -0.928 6.928 23 O -0.934 6.934 24 C -0.722 4.722 25 N -0.106 5.106 26 O 0.024 5.976 27 C -0.133 4.133 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.488 -6.472 7.447 14.399 hybrid contribution 0.827 0.781 -1.006 1.519 sum -9.660 -5.691 6.441 12.930 Atomic orbital electron populations 1.69756 1.07641 1.29904 1.34086 1.25952 0.94797 1.01638 0.92039 0.86250 0.80747 0.80362 0.79207 1.19441 1.19832 1.18275 1.19593 0.98171 0.90811 1.40007 0.89831 1.17484 0.90907 0.92618 0.89127 1.21233 1.03177 0.92677 1.04728 1.20487 0.95685 0.97144 0.98227 1.20324 1.00274 0.94795 1.05367 1.17215 0.91199 0.96217 0.99335 1.26997 0.94950 0.79229 0.92881 1.72122 1.06873 1.28629 1.15380 1.25001 0.98049 0.88477 0.99056 1.19747 0.90465 1.00812 0.89269 0.85926 1.22312 0.89113 1.03107 1.01041 1.30617 1.09654 1.11126 1.19958 1.08916 0.79352 0.75471 0.78439 1.93640 1.80039 1.41333 1.77814 1.93622 1.84685 1.50128 1.64938 1.30715 1.24542 1.12912 1.04079 1.74490 1.05453 1.15765 1.14861 1.85426 1.30689 1.35368 1.46140 1.21600 0.97806 0.95500 0.98344 0.90349 0.88102 0.88136 0.87637 0.88540 0.87584 0.83923 0.83984 0.83524 0.83767 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.89 10.97 55.55 0.61 -18.28 16 2 C 0.07 1.72 5.14 -17.34 -0.09 1.63 16 3 Si 0.91 17.33 29.59 -169.99 -5.03 12.30 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.46 -10.97 9.05 -37.73 -0.34 -11.31 16 8 H 0.08 1.91 7.90 -52.48 -0.41 1.50 16 9 C 0.10 2.43 5.57 -106.87 -0.59 1.83 16 10 C -0.20 -4.29 9.78 -38.81 -0.38 -4.67 16 11 C -0.10 -1.93 10.01 -39.73 -0.40 -2.33 16 12 C -0.19 -3.82 9.71 -38.91 -0.38 -4.20 16 13 C -0.04 -0.80 5.87 -105.05 -0.62 -1.42 16 14 C 0.27 5.54 8.01 -13.84 -0.11 5.42 16 15 N -0.50 -9.11 11.25 -10.17 -0.11 -9.22 16 16 C 0.17 2.66 6.65 -156.55 -1.04 1.62 16 17 C 0.02 0.19 3.09 -90.71 -0.28 -0.09 16 18 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 19 C -0.12 -0.97 5.78 -25.19 -0.15 -1.12 16 20 C -0.58 -3.46 7.31 38.24 0.28 -3.18 16 21 S 2.40 20.90 6.10 -107.50 -0.66 20.25 16 22 O -0.93 -11.71 18.14 -57.73 -1.05 -12.75 16 23 O -0.94 -10.81 18.15 -57.73 -1.05 -11.86 16 24 C -0.59 -5.41 6.72 37.77 0.25 -5.15 16 25 N -0.40 -7.02 11.89 31.18 0.37 -6.65 16 26 O 0.08 1.62 11.12 16.70 0.19 1.81 16 27 C -0.11 -2.62 8.37 -38.45 -0.32 -2.94 16 28 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 29 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 30 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.11 2.01 7.86 -52.49 -0.41 1.60 16 32 H 0.10 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.14 0.55 8.14 -51.92 -0.42 0.12 16 36 H 0.15 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.14 1.49 7.71 -51.93 -0.40 1.09 16 38 H 0.13 3.23 6.06 -52.49 -0.32 2.91 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -30.98 342.30 -9.79 -40.77 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.06 Total: 4.38 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -4.16 Total: -25.90 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.87 Total: -34.15 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -1.91 Total: -22.81 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Atomic # 16 Polarization: 20.90 SS G_CDS: -0.66 Total: 20.25 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.98 -9.79 -40.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356021116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.496 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds