Wall clock time and date at job start Tue Mar 31 2020 18:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86789 * 120.00260 * 2 1 4 4 H 1.48501 * 109.47730 * 274.96580 * 3 2 1 5 5 H 1.48506 * 109.47154 * 34.96881 * 3 2 1 6 6 H 1.48503 * 109.47176 * 154.96371 * 3 2 1 7 7 C 1.39934 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99730 * 162.61835 * 7 2 1 9 9 C 1.41432 * 120.00183 * 342.61347 * 7 2 1 10 10 C 1.40797 * 120.17810 * 154.92930 * 9 7 2 11 11 C 1.37706 * 120.04273 * 179.97438 * 10 9 7 12 12 C 1.38368 * 120.40978 * 0.25479 * 11 10 9 13 13 C 1.39900 * 120.35656 * 359.49033 * 12 11 10 14 14 C 1.47848 * 120.02735 * 180.25855 * 13 12 11 15 15 N 1.32103 * 126.67073 * 359.96101 * 14 13 12 16 16 C 1.34215 * 105.54327 * 179.91514 * 15 14 13 17 17 C 1.50703 * 126.18499 * 180.08637 * 16 15 14 18 18 H 1.08994 * 109.64585 * 0.98701 * 17 16 15 19 19 C 1.53871 * 109.64745 * 240.55406 * 17 16 15 20 20 C 1.55049 * 106.62634 * 192.97209 * 19 17 16 21 21 S 1.83288 * 102.56621 * 42.43373 * 20 19 17 22 22 O 1.42099 * 109.35239 * 90.18781 * 21 20 19 23 23 O 1.42101 * 109.35583 * 223.25827 * 21 20 19 24 24 C 1.54170 * 109.64239 * 121.41618 * 17 16 15 25 25 N 1.30031 * 107.62501 * 0.34999 * 16 15 14 26 26 O 1.21295 * 110.47832 * 359.77702 * 25 16 15 27 27 C 1.39033 * 119.94597 * 0.50376 * 13 12 11 28 28 H 0.97005 * 120.00170 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.97539 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.79428 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.82175 * 179.74111 * 12 11 10 32 32 H 1.09004 * 110.03017 * 312.26272 * 19 17 16 33 33 H 1.09000 * 110.03060 * 73.63052 * 19 17 16 34 34 H 1.08992 * 110.79284 * 160.70203 * 20 19 17 35 35 H 1.09008 * 110.78782 * 284.16853 * 20 19 17 36 36 H 1.09000 * 110.31905 * 266.66172 * 24 17 16 37 37 H 1.09004 * 110.31944 * 28.85372 * 24 17 16 38 38 H 1.08000 * 120.19687 * 179.72766 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4962 2.6200 0.8025 6 1 3.5884 1.4120 0.5925 7 6 2.0078 -1.2119 -0.0005 8 1 3.0509 -1.2332 -0.2800 9 6 1.3490 -2.4089 0.3649 10 6 1.8188 -3.6486 -0.1094 11 6 1.1755 -4.8123 0.2486 12 6 0.0629 -4.7733 1.0703 13 6 -0.4152 -3.5514 1.5556 14 6 -1.6012 -3.5187 2.4377 15 7 -2.3076 -4.5566 2.8487 16 6 -3.2772 -4.0472 3.6244 17 6 -4.3496 -4.8300 4.3374 18 1 -4.2155 -5.8944 4.1451 19 6 -5.7347 -4.3844 3.8368 20 6 -6.7740 -4.9714 4.8264 21 16 -5.9875 -4.6721 6.4547 22 8 -6.3939 -3.4029 6.9478 23 8 -6.1347 -5.8278 7.2684 24 6 -4.2653 -4.5625 5.8533 25 7 -3.1273 -2.7557 3.6449 26 8 -2.1729 -2.4286 2.9718 27 6 0.2229 -2.3674 1.2035 28 1 -0.4850 0.8401 0.0004 29 1 2.6842 -3.6867 -0.7544 30 1 1.5391 -5.7610 -0.1179 31 1 -0.4367 -5.6915 1.3417 32 1 -5.7975 -3.2962 3.8315 33 1 -5.9121 -4.7731 2.8340 34 1 -7.7227 -4.4399 4.7516 35 1 -6.9126 -6.0388 4.6540 36 1 -3.6484 -5.3195 6.3375 37 1 -3.8612 -3.5675 6.0402 38 1 -0.1453 -1.4214 1.5723 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356021116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:31 Heat of formation + Delta-G solvation = -7.957572 kcal Electronic energy + Delta-G solvation = -25338.305084 eV Core-core repulsion = 21468.018877 eV Total energy + Delta-G solvation = -3870.286207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.53358 -39.51700 -38.62910 -38.14847 -37.14240 -36.33942 -35.55741 -33.88985 -31.63638 -31.30468 -30.68851 -27.42475 -27.00866 -25.42146 -24.55888 -23.09252 -22.54038 -21.15495 -19.91342 -19.45542 -19.05618 -18.64770 -17.84039 -17.50331 -17.13935 -16.71684 -16.53105 -16.23702 -15.85691 -15.31636 -15.17685 -15.07772 -14.55621 -14.30075 -13.79517 -13.75188 -13.68593 -13.40684 -13.29056 -13.27890 -13.18144 -13.11058 -12.82708 -12.71084 -12.46093 -12.34876 -12.17380 -12.11719 -11.85559 -11.67845 -11.56556 -11.47793 -11.26616 -10.98876 -9.44578 -9.36318 -8.67903 -6.38830 -1.01437 -0.40672 0.74984 0.96409 1.37755 1.41858 1.49940 1.54851 1.59651 1.73275 2.20697 2.40029 2.52310 2.70251 2.88692 3.02909 3.35564 3.49420 3.52649 3.62527 3.73638 3.93523 4.09462 4.42074 4.47196 4.50788 4.59640 4.61332 4.74518 4.80231 4.84314 4.90236 4.93814 5.06197 5.15787 5.29920 5.44454 5.80260 5.93286 6.00309 6.22596 6.53712 6.87280 6.87542 7.03624 8.29117 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002638 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.799337 B =10611.112543 C =11577.289877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.036 3.964 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.490 4.490 8 H 0.086 0.914 9 C 0.073 3.927 10 C -0.204 4.204 11 C -0.092 4.092 12 C -0.180 4.180 13 C -0.042 4.042 14 C 0.258 3.742 15 N -0.494 5.494 16 C 0.183 3.817 17 C 0.011 3.989 18 H 0.153 0.847 19 C -0.120 4.120 20 C -0.550 4.550 21 S 2.410 3.590 22 O -0.976 6.976 23 O -0.965 6.965 24 C -0.594 4.594 25 N -0.407 5.407 26 O 0.055 5.945 27 C -0.137 4.137 28 H 0.289 0.711 29 H 0.115 0.885 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.164 0.836 37 H 0.128 0.872 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 -8.883 5.719 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.519 4.519 8 H 0.104 0.896 9 C 0.071 3.929 10 C -0.224 4.224 11 C -0.110 4.110 12 C -0.201 4.201 13 C -0.045 4.045 14 C 0.043 3.957 15 N -0.228 5.228 16 C -0.091 4.091 17 C -0.010 4.010 18 H 0.170 0.830 19 C -0.160 4.160 20 C -0.682 4.682 21 S 2.596 3.404 22 O -0.973 6.973 23 O -0.962 6.962 24 C -0.723 4.723 25 N -0.121 5.121 26 O 0.003 5.997 27 C -0.159 4.159 28 H 0.100 0.900 29 H 0.133 0.867 30 H 0.158 0.842 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.184 0.816 35 H 0.195 0.805 36 H 0.182 0.818 37 H 0.146 0.854 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.415 -8.525 7.153 15.942 hybrid contribution 1.035 1.232 -0.899 1.843 sum -10.380 -7.293 6.254 14.144 Atomic orbital electron populations 1.69827 1.08988 1.30784 1.35256 1.26725 0.95409 1.04556 0.91225 0.85238 0.79326 0.76196 0.79341 1.18696 1.19645 1.17974 1.19848 0.98521 0.91847 1.41711 0.89617 1.17835 0.91515 0.93829 0.89708 1.21504 1.03654 0.92571 1.04688 1.20889 0.94818 0.98165 0.97119 1.20654 1.00155 0.94844 1.04435 1.17382 0.91550 0.96205 0.99355 1.26891 0.95284 0.79991 0.93561 1.72130 1.07121 1.28037 1.15522 1.25939 0.97778 0.88068 0.97351 1.20214 0.89854 1.01682 0.89232 0.82952 1.22366 0.88390 1.02728 1.02471 1.30475 1.09271 1.13579 1.14885 1.08376 0.78769 0.73820 0.79426 1.93583 1.80588 1.43335 1.79791 1.93582 1.84917 1.50592 1.67102 1.30712 1.25493 1.12652 1.03469 1.74508 1.05248 1.17065 1.15289 1.85425 1.31540 1.35900 1.46860 1.21442 0.99010 0.95523 0.99929 0.90031 0.86694 0.84184 0.85683 0.89801 0.85867 0.81602 0.80549 0.81759 0.85375 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.15 10.97 21.82 0.24 -40.92 16 2 C 0.04 1.73 5.14 85.25 0.44 2.17 16 3 Si 0.98 36.32 29.59 68.60 2.03 38.35 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.49 -24.33 9.05 23.47 0.21 -24.12 16 8 H 0.09 4.03 7.90 -2.91 -0.02 4.01 16 9 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 10 C -0.20 -8.77 9.78 22.77 0.22 -8.54 16 11 C -0.09 -3.47 10.01 22.17 0.22 -3.25 16 12 C -0.18 -7.12 9.71 22.70 0.22 -6.90 16 13 C -0.04 -1.87 5.87 -20.14 -0.12 -1.98 16 14 C 0.26 10.55 8.01 87.32 0.70 11.25 16 15 N -0.49 -17.53 11.25 -302.79 -3.40 -20.94 16 16 C 0.18 5.56 6.65 138.53 0.92 6.48 16 17 C 0.01 0.20 3.09 -10.85 -0.03 0.17 16 18 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 19 C -0.12 -1.62 5.78 31.59 0.18 -1.44 16 20 C -0.55 -4.23 7.31 72.68 0.53 -3.70 16 21 S 2.41 37.94 6.10 -56.49 -0.34 37.59 16 22 O -0.98 -24.18 18.14 -127.47 -2.31 -26.49 16 23 O -0.96 -20.60 18.15 -127.47 -2.31 -22.91 16 24 C -0.59 -9.92 6.72 72.38 0.49 -9.44 16 25 N -0.41 -14.60 11.89 -58.67 -0.70 -15.30 16 26 O 0.05 2.27 11.12 69.83 0.78 3.04 16 27 C -0.14 -6.77 8.37 23.00 0.19 -6.58 16 28 H 0.29 13.25 8.30 -92.70 -0.77 12.48 16 29 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 31 H 0.13 4.43 7.86 -2.91 -0.02 4.41 16 32 H 0.08 1.39 8.07 -2.38 -0.02 1.37 16 33 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.17 0.71 8.14 -2.39 -0.02 0.70 16 35 H 0.18 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.16 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.13 2.63 7.71 -2.38 -0.02 2.61 16 38 H 0.11 5.83 6.06 -2.91 -0.02 5.81 16 Total: -1.00 -69.92 342.30 -0.86 -70.79 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.11 Total: 19.15 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 4.06 Total: -42.38 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -3.86 Total: -77.15 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -3.85 Total: -46.36 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 16 Polarization: 37.94 SS G_CDS: -0.34 Total: 37.59 kcal Total: -69.92 -0.86 -70.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356021116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.830 kcal (2) G-P(sol) polarization free energy of solvation -69.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds