Wall clock time and date at job start Tue Mar 31 2020 18:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00331 * 2 1 4 4 H 1.48505 * 109.46872 * 90.00460 * 3 2 1 5 5 H 1.48500 * 109.47068 * 209.99909 * 3 2 1 6 6 H 1.48500 * 109.47174 * 330.00457 * 3 2 1 7 7 C 1.37884 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99951 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99580 * 179.97438 * 7 2 1 10 10 O 1.42903 * 112.94663 * 50.33313 * 9 7 2 11 11 C 1.53947 * 113.74572 * 278.73755 * 9 7 2 12 12 N 1.47812 * 86.03631 * 222.08505 * 11 9 7 13 13 C 1.34783 * 134.45467 * 204.63558 * 12 11 9 14 14 O 1.21584 * 119.99859 * 174.31265 * 13 12 11 15 15 C 1.47614 * 119.99826 * 354.31821 * 13 12 11 16 16 C 1.39729 * 120.18668 * 172.84494 * 15 13 12 17 17 C 1.37626 * 120.26745 * 179.63379 * 16 15 13 18 18 C 1.39350 * 120.46379 * 0.56654 * 17 16 15 19 19 C 1.39800 * 119.26599 * 359.87061 * 18 17 16 20 20 C 1.38137 * 120.56889 * 359.75653 * 19 18 17 21 21 S 1.76467 * 119.33495 * 179.59194 * 19 18 17 22 22 C 1.81768 * 101.76867 * 329.52807 * 21 19 18 23 23 C 1.50379 * 108.91380 * 44.73154 * 22 21 19 24 24 O 1.21286 * 118.27631 * 144.99900 * 23 22 21 25 25 N 1.33086 * 123.45306 * 324.97077 * 23 22 21 26 26 C 1.47574 * 91.05374 * 24.54871 * 12 11 9 27 27 H 0.97001 * 119.99169 * 359.97438 * 1 2 3 28 28 H 0.96699 * 113.99898 * 309.66374 * 10 9 7 29 29 H 1.08998 * 113.76544 * 336.35072 * 11 9 7 30 30 H 1.08997 * 113.77087 * 107.74798 * 11 9 7 31 31 H 1.08003 * 119.86910 * 359.89157 * 16 15 13 32 32 H 1.08000 * 119.76822 * 180.29719 * 17 16 15 33 33 H 1.08001 * 120.09265 * 180.14425 * 20 19 18 34 34 H 1.09010 * 109.57473 * 284.89254 * 22 21 19 35 35 H 1.09002 * 109.65299 * 164.61494 * 22 21 19 36 36 H 0.97000 * 117.02530 * 178.96778 * 25 23 22 37 37 H 1.09005 * 113.77004 * 221.15224 * 26 12 11 38 38 H 1.09001 * 113.87428 * 89.76320 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6527 -0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 8 4.0690 -0.3545 1.0118 11 6 4.1308 -0.9799 -1.3941 12 7 5.0915 -2.0380 -1.0168 13 6 6.3431 -2.3573 -1.4015 14 8 6.9457 -3.2468 -0.8323 15 6 6.9824 -1.6271 -2.5137 16 6 8.3276 -1.8495 -2.8191 17 6 8.9233 -1.1752 -3.8605 18 6 8.1967 -0.2554 -4.6141 19 6 6.8532 -0.0261 -4.3028 20 6 6.2471 -0.7052 -3.2637 21 16 5.9344 1.1462 -5.2491 22 6 7.2274 2.3300 -5.7294 23 6 8.4391 1.5680 -6.1904 24 8 9.1024 2.0344 -7.0923 25 7 8.8222 0.4089 -5.6604 26 6 4.1312 -2.6026 -0.0489 27 1 -0.4849 0.8401 0.0004 28 1 3.7031 0.5405 1.0261 29 1 3.4709 -1.2582 -2.2158 30 1 4.5860 0.0016 -1.5262 31 1 8.9012 -2.5566 -2.2382 32 1 9.9623 -1.3569 -4.0925 33 1 5.2081 -0.5238 -3.0314 34 1 7.4906 2.9508 -4.8728 35 1 6.8634 2.9617 -6.5397 36 1 9.6104 -0.0102 -6.0400 37 1 4.5867 -2.9143 0.8911 38 1 3.4707 -3.3590 -0.4728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365691752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:08 Heat of formation + Delta-G solvation = -21.635483 kcal Electronic energy + Delta-G solvation = -26081.838161 eV Core-core repulsion = 22210.958835 eV Total energy + Delta-G solvation = -3870.879326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14040 -40.19891 -38.95540 -37.60625 -35.53931 -34.59922 -32.61194 -31.74590 -30.64847 -30.42505 -28.68543 -26.02651 -25.63544 -23.92904 -23.40347 -21.09117 -20.50591 -19.41334 -18.48290 -17.94120 -17.71764 -17.35022 -16.71762 -16.45131 -16.10568 -15.66785 -15.16866 -15.01504 -14.78617 -14.17612 -14.05310 -13.80782 -13.70120 -13.58749 -13.37320 -13.15769 -12.97912 -12.64739 -12.36896 -12.20941 -11.83951 -11.42092 -11.23873 -11.07431 -11.00275 -10.67708 -10.55491 -10.19262 -9.94315 -9.90603 -9.41808 -9.09009 -8.75849 -8.75265 -8.17014 -7.83574 -6.47849 -4.54903 0.31331 0.74635 1.02130 1.67347 2.06424 2.39378 2.79879 2.94701 2.95871 3.10300 3.19602 3.63561 3.69222 3.97646 4.23783 4.45364 4.46865 4.63029 4.75268 4.79224 4.95722 5.02894 5.05676 5.37434 5.41356 5.55054 5.67572 5.88608 5.92245 5.97223 6.06257 6.10943 6.25177 6.25712 6.40197 6.50260 6.62701 7.12710 7.28585 7.96634 8.10483 8.40901 8.45514 8.56315 9.09115 10.64175 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.004100 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.200963 B = 6828.144963 C = 8430.943212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.082 3.918 3 Si 0.854 3.146 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.092 0.908 9 C 0.198 3.802 10 O -0.552 6.552 11 C 0.051 3.949 12 N -0.627 5.627 13 C 0.575 3.425 14 O -0.552 6.552 15 C -0.127 4.127 16 C -0.025 4.025 17 C -0.148 4.148 18 C 0.175 3.825 19 C -0.145 4.145 20 C -0.035 4.035 21 S -0.069 6.069 22 C -0.135 4.135 23 C 0.527 3.473 24 O -0.517 6.517 25 N -0.653 5.653 26 C 0.129 3.871 27 H 0.272 0.728 28 H 0.353 0.647 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.127 0.873 35 H 0.151 0.849 36 H 0.415 0.585 37 H 0.079 0.921 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.929 2.986 -10.363 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.124 4.124 3 Si 0.683 3.317 4 H -0.193 1.193 5 H -0.180 1.180 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.110 0.890 9 C 0.157 3.843 10 O -0.363 6.363 11 C -0.072 4.072 12 N -0.359 5.359 13 C 0.365 3.635 14 O -0.433 6.433 15 C -0.132 4.132 16 C -0.046 4.046 17 C -0.170 4.170 18 C 0.073 3.927 19 C -0.259 4.259 20 C -0.058 4.058 21 S 0.171 5.829 22 C -0.285 4.285 23 C 0.312 3.688 24 O -0.393 6.393 25 N -0.296 5.296 26 C 0.008 3.992 27 H 0.082 0.918 28 H 0.205 0.795 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.253 0.747 37 H 0.097 0.903 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.544 2.618 -10.787 17.512 hybrid contribution 1.600 1.276 -0.032 2.047 sum 15.145 3.894 -10.819 19.015 Atomic orbital electron populations 1.69853 1.06088 1.27705 1.47238 1.24997 0.94892 0.98956 0.93517 0.87399 0.80560 0.84494 0.79294 1.19275 1.18019 1.20758 1.21215 0.87517 0.95778 1.53115 0.88959 1.20529 0.92661 0.87918 0.83192 1.86477 1.67497 1.25658 1.56659 1.24906 0.88759 0.90391 1.03119 1.50036 1.12025 1.32357 1.41504 1.17622 0.80711 0.82758 0.82459 1.90742 1.63181 1.32927 1.56420 1.20032 0.94993 0.99782 0.98423 1.21141 0.93221 0.96025 0.94232 1.20783 1.00154 0.99132 0.96961 1.17675 0.91178 0.94556 0.89272 1.21285 0.94731 1.06072 1.03855 1.21709 1.01416 0.92401 0.90258 1.86155 1.11713 1.22720 1.62302 1.23855 0.95462 1.01034 1.08184 1.19922 0.85874 0.80674 0.82308 1.90835 1.53892 1.65857 1.28709 1.42967 1.31599 1.21587 1.33420 1.23338 0.87057 0.97126 0.91709 0.91806 0.79533 0.88177 0.90559 0.83493 0.84257 0.82513 0.85490 0.83117 0.74697 0.90262 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.59 13.96 55.43 0.77 -22.81 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.85 17.90 24.31 -169.99 -4.13 13.77 16 4 H -0.27 -5.50 7.05 56.52 0.40 -5.10 16 5 H -0.26 -4.89 5.16 56.52 0.29 -4.60 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.19 9.19 -34.44 -0.32 -13.51 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 9 C 0.20 4.23 1.06 -90.85 -0.10 4.14 16 10 O -0.55 -12.34 13.35 -35.23 -0.47 -12.81 16 11 C 0.05 0.94 4.68 -2.84 -0.01 0.92 16 12 N -0.63 -11.72 3.60 -179.31 -0.65 -12.37 16 13 C 0.57 10.48 7.98 -12.43 -0.10 10.38 16 14 O -0.55 -11.39 17.10 5.29 0.09 -11.30 16 15 C -0.13 -1.86 5.88 -104.95 -0.62 -2.48 16 16 C -0.03 -0.30 9.57 -39.25 -0.38 -0.67 16 17 C -0.15 -1.39 9.79 -39.39 -0.39 -1.78 16 18 C 0.18 1.81 6.54 -83.70 -0.55 1.26 16 19 C -0.14 -1.75 5.99 -39.03 -0.23 -1.98 16 20 C -0.03 -0.48 8.81 -39.05 -0.34 -0.82 16 21 S -0.07 -0.76 22.27 -107.50 -2.39 -3.15 16 22 C -0.13 -1.16 6.64 35.85 0.24 -0.92 16 23 C 0.53 5.41 7.60 -11.89 -0.09 5.32 16 24 O -0.52 -6.70 17.76 5.55 0.10 -6.60 16 25 N -0.65 -5.93 5.06 -10.26 -0.05 -5.98 16 26 C 0.13 2.51 8.23 -2.97 -0.02 2.49 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 28 H 0.35 7.51 3.57 45.56 0.16 7.67 16 29 H 0.10 1.73 8.00 -51.93 -0.42 1.31 16 30 H 0.08 1.35 5.59 -51.93 -0.29 1.06 16 31 H 0.15 1.65 7.66 -52.48 -0.40 1.25 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.16 2.25 4.10 -52.49 -0.22 2.03 16 34 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.15 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.41 2.94 8.57 -40.82 -0.35 2.59 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.10 1.76 8.09 -51.93 -0.42 1.34 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -30.70 328.59 -8.07 -38.77 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -3.29 Total: 13.20 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -3.00 Total: 4.32 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.08 Total: -41.16 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.28 Total: -30.70 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -4.13 Total: 13.77 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.39 Total: -3.15 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.70 -8.07 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365691752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.135 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds