Wall clock time and date at job start Tue Mar 31 2020 18:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00331 * 2 1 4 4 H 1.48505 * 109.46872 * 90.00460 * 3 2 1 5 5 H 1.48500 * 109.47068 * 209.99909 * 3 2 1 6 6 H 1.48500 * 109.47174 * 330.00457 * 3 2 1 7 7 C 1.37884 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99951 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99580 * 179.97438 * 7 2 1 10 10 O 1.42903 * 112.94663 * 50.33313 * 9 7 2 11 11 C 1.53947 * 113.74572 * 278.73755 * 9 7 2 12 12 N 1.47812 * 86.03631 * 222.08505 * 11 9 7 13 13 C 1.34783 * 134.45467 * 204.63558 * 12 11 9 14 14 O 1.21584 * 119.99859 * 174.31265 * 13 12 11 15 15 C 1.47614 * 119.99826 * 354.31821 * 13 12 11 16 16 C 1.39729 * 120.18668 * 172.84494 * 15 13 12 17 17 C 1.37626 * 120.26745 * 179.63379 * 16 15 13 18 18 C 1.39350 * 120.46379 * 0.56654 * 17 16 15 19 19 C 1.39800 * 119.26599 * 359.87061 * 18 17 16 20 20 C 1.38137 * 120.56889 * 359.75653 * 19 18 17 21 21 S 1.76467 * 119.33495 * 179.59194 * 19 18 17 22 22 C 1.81768 * 101.76867 * 329.52807 * 21 19 18 23 23 C 1.50379 * 108.91380 * 44.73154 * 22 21 19 24 24 O 1.21286 * 118.27631 * 144.99900 * 23 22 21 25 25 N 1.33086 * 123.45306 * 324.97077 * 23 22 21 26 26 C 1.47574 * 91.05374 * 24.54871 * 12 11 9 27 27 H 0.97001 * 119.99169 * 359.97438 * 1 2 3 28 28 H 0.96699 * 113.99898 * 309.66374 * 10 9 7 29 29 H 1.08998 * 113.76544 * 336.35072 * 11 9 7 30 30 H 1.08997 * 113.77087 * 107.74798 * 11 9 7 31 31 H 1.08003 * 119.86910 * 359.89157 * 16 15 13 32 32 H 1.08000 * 119.76822 * 180.29719 * 17 16 15 33 33 H 1.08001 * 120.09265 * 180.14425 * 20 19 18 34 34 H 1.09010 * 109.57473 * 284.89254 * 22 21 19 35 35 H 1.09002 * 109.65299 * 164.61494 * 22 21 19 36 36 H 0.97000 * 117.02530 * 178.96778 * 25 23 22 37 37 H 1.09005 * 113.77004 * 221.15224 * 26 12 11 38 38 H 1.09001 * 113.87428 * 89.76320 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6527 -0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 8 4.0690 -0.3545 1.0118 11 6 4.1308 -0.9799 -1.3941 12 7 5.0915 -2.0380 -1.0168 13 6 6.3431 -2.3573 -1.4015 14 8 6.9457 -3.2468 -0.8323 15 6 6.9824 -1.6271 -2.5137 16 6 8.3276 -1.8495 -2.8191 17 6 8.9233 -1.1752 -3.8605 18 6 8.1967 -0.2554 -4.6141 19 6 6.8532 -0.0261 -4.3028 20 6 6.2471 -0.7052 -3.2637 21 16 5.9344 1.1462 -5.2491 22 6 7.2274 2.3300 -5.7294 23 6 8.4391 1.5680 -6.1904 24 8 9.1024 2.0344 -7.0923 25 7 8.8222 0.4089 -5.6604 26 6 4.1312 -2.6026 -0.0489 27 1 -0.4849 0.8401 0.0004 28 1 3.7031 0.5405 1.0261 29 1 3.4709 -1.2582 -2.2158 30 1 4.5860 0.0016 -1.5262 31 1 8.9012 -2.5566 -2.2382 32 1 9.9623 -1.3569 -4.0925 33 1 5.2081 -0.5238 -3.0314 34 1 7.4906 2.9508 -4.8728 35 1 6.8634 2.9617 -6.5397 36 1 9.6104 -0.0102 -6.0400 37 1 4.5867 -2.9143 0.8911 38 1 3.4707 -3.3590 -0.4728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365691752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:08 Heat of formation + Delta-G solvation = -45.216948 kcal Electronic energy + Delta-G solvation = -26082.860730 eV Core-core repulsion = 22210.958835 eV Total energy + Delta-G solvation = -3871.901895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04907 -41.51166 -40.08528 -39.01018 -36.48638 -36.24944 -34.53247 -32.65834 -31.67213 -31.26095 -30.12530 -27.53589 -27.28766 -25.00561 -24.33350 -22.24538 -21.67974 -20.80062 -19.44194 -19.36879 -18.77134 -18.72516 -18.09494 -17.66764 -17.15925 -16.82638 -16.55083 -16.04955 -15.86849 -15.44095 -15.39761 -15.04063 -14.91518 -14.68574 -14.48499 -14.35780 -14.20120 -14.06519 -13.87641 -13.55607 -13.00210 -12.68867 -12.62098 -12.43454 -12.18789 -11.99694 -11.91973 -11.52544 -11.37448 -11.09720 -10.90701 -10.76343 -10.45095 -9.80223 -9.54852 -8.68386 -8.40550 -6.53327 -0.61805 -0.12839 0.18430 0.83976 1.26568 1.27651 1.30246 1.42824 1.63040 1.69374 1.78101 2.20122 2.57429 2.79276 2.86862 3.16581 3.35417 3.46405 3.78495 3.86143 3.92040 4.03068 4.08938 4.28339 4.34167 4.34352 4.49195 4.58532 4.64400 4.66510 4.75266 4.87680 4.90426 5.19888 5.24211 5.30716 5.43952 5.81860 6.06165 6.53808 6.55146 6.63848 6.72061 7.00403 7.15317 8.74684 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.004100 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.200963 B = 6828.144963 C = 8430.943212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.032 3.968 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.226 1.226 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.187 3.813 10 O -0.560 6.560 11 C 0.068 3.932 12 N -0.629 5.629 13 C 0.572 3.428 14 O -0.583 6.583 15 C -0.149 4.149 16 C -0.024 4.024 17 C -0.128 4.128 18 C 0.186 3.814 19 C -0.152 4.152 20 C -0.041 4.041 21 S -0.087 6.087 22 C -0.127 4.127 23 C 0.529 3.471 24 O -0.544 6.544 25 N -0.643 5.643 26 C 0.126 3.874 27 H 0.273 0.727 28 H 0.357 0.643 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.180 0.820 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.426 0.574 37 H 0.073 0.927 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.751 4.613 -11.949 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.170 4.170 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.149 1.149 6 H -0.207 1.207 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.146 3.854 10 O -0.371 6.371 11 C -0.054 4.054 12 N -0.362 5.362 13 C 0.364 3.636 14 O -0.466 6.466 15 C -0.154 4.154 16 C -0.045 4.045 17 C -0.150 4.150 18 C 0.083 3.917 19 C -0.267 4.267 20 C -0.064 4.064 21 S 0.153 5.847 22 C -0.277 4.277 23 C 0.315 3.685 24 O -0.422 6.422 25 N -0.287 5.287 26 C 0.004 3.996 27 H 0.083 0.917 28 H 0.209 0.791 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.170 0.830 32 H 0.197 0.803 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.266 0.734 37 H 0.092 0.908 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.389 4.228 -12.382 20.971 hybrid contribution 0.735 0.700 0.426 1.101 sum 17.124 4.928 -11.955 21.458 Atomic orbital electron populations 1.69995 1.08037 1.28799 1.49164 1.25783 0.95533 1.02733 0.92927 0.86455 0.80455 0.79581 0.80008 1.18444 1.14939 1.20700 1.21336 0.89402 0.94678 1.52774 0.92373 1.20581 0.90905 0.89153 0.84765 1.86470 1.67328 1.26046 1.57299 1.24696 0.88452 0.91166 1.01085 1.49985 1.12376 1.32379 1.41417 1.18195 0.80042 0.82502 0.82832 1.90713 1.63692 1.34406 1.57790 1.19803 0.96276 1.01109 0.98236 1.21257 0.92096 0.96255 0.94921 1.21094 1.01649 0.97188 0.95029 1.17740 0.90615 0.94173 0.89142 1.21343 0.95550 1.06231 1.03544 1.21517 1.00985 0.92865 0.91053 1.86257 1.12997 1.23471 1.61927 1.23981 0.93854 1.00379 1.09496 1.20162 0.85899 0.80716 0.81706 1.90839 1.54916 1.66550 1.29878 1.42896 1.31727 1.21256 1.32809 1.23307 0.87577 0.96534 0.92157 0.91717 0.79090 0.87248 0.89147 0.83016 0.80256 0.83546 0.83569 0.81356 0.73366 0.90819 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.25 13.96 21.45 0.30 -50.95 16 2 C 0.03 1.61 5.47 84.66 0.46 2.07 16 3 Si 0.91 36.21 24.31 68.60 1.67 37.88 16 4 H -0.26 -9.95 7.05 99.48 0.70 -9.25 16 5 H -0.23 -7.82 5.16 99.48 0.51 -7.31 16 6 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -27.33 9.19 25.60 0.24 -27.09 16 8 H 0.06 3.23 8.06 -2.91 -0.02 3.20 16 9 C 0.19 7.96 1.06 -10.88 -0.01 7.95 16 10 O -0.56 -24.48 13.35 -148.98 -1.99 -26.47 16 11 C 0.07 2.45 4.68 86.44 0.40 2.85 16 12 N -0.63 -23.27 3.60 -843.31 -3.03 -26.31 16 13 C 0.57 20.54 7.98 86.72 0.69 21.23 16 14 O -0.58 -23.99 17.10 -3.98 -0.07 -24.05 16 15 C -0.15 -4.13 5.88 -20.08 -0.12 -4.25 16 16 C -0.02 -0.51 9.57 22.49 0.22 -0.29 16 17 C -0.13 -1.88 9.79 22.39 0.22 -1.66 16 18 C 0.19 3.16 6.54 38.68 0.25 3.41 16 19 C -0.15 -3.25 5.99 22.62 0.14 -3.12 16 20 C -0.04 -1.05 8.81 22.61 0.20 -0.85 16 21 S -0.09 -1.68 22.27 -56.49 -1.26 -2.94 16 22 C -0.13 -1.76 6.64 71.14 0.47 -1.28 16 23 C 0.53 9.12 7.60 87.82 0.67 9.79 16 24 O -0.54 -12.56 17.76 -3.05 -0.05 -12.62 16 25 N -0.64 -9.28 5.06 -305.71 -1.55 -10.83 16 26 C 0.13 4.98 8.23 86.49 0.71 5.69 16 27 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.36 14.54 3.57 -74.06 -0.26 14.27 16 29 H 0.11 3.70 8.00 -2.39 -0.02 3.68 16 30 H 0.09 2.98 5.59 -2.39 -0.01 2.97 16 31 H 0.15 3.06 7.66 -2.91 -0.02 3.03 16 32 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.15 3.97 4.10 -2.91 -0.01 3.96 16 34 H 0.15 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.17 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.43 4.32 8.57 -92.71 -0.79 3.52 16 37 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 38 H 0.11 3.95 8.09 -2.39 -0.02 3.93 16 Total: -1.00 -67.97 328.59 -1.54 -69.51 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -0.10 Total: 32.31 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 4.54 Total: 14.46 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -4.28 Total: -88.08 kcal Atomic # 8 Polarization: -61.03 SS G_CDS: -2.11 Total: -63.14 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 1.67 Total: 37.88 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -1.26 Total: -2.94 kcal Total: -67.97 -1.54 -69.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365691752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.294 kcal (2) G-P(sol) polarization free energy of solvation -67.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds