Wall clock time and date at job start Tue Mar 31 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48500 * 109.46803 * 269.99779 * 3 2 1 5 5 H 1.48497 * 109.47155 * 29.99529 * 3 2 1 6 6 H 1.48492 * 109.47414 * 150.00082 * 3 2 1 7 7 C 1.37880 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99660 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46994 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99904 * 179.97438 * 10 9 7 12 12 O 1.21359 * 120.00347 * 0.02562 * 11 10 9 13 13 C 1.49351 * 119.99739 * 179.97438 * 11 10 9 14 14 O 1.21379 * 120.00417 * 0.02562 * 13 11 10 15 15 N 1.34773 * 119.99739 * 180.02562 * 13 11 10 16 16 C 1.39809 * 120.00135 * 184.61973 * 15 13 11 17 17 C 1.38932 * 120.04946 * 324.88585 * 16 15 13 18 18 C 1.38074 * 119.94842 * 180.02562 * 17 16 15 19 19 C 1.38509 * 120.05108 * 0.02562 * 18 17 16 20 20 F 1.35105 * 119.94958 * 180.27964 * 19 18 17 21 21 C 1.38463 * 120.10213 * 0.02562 * 19 18 17 22 22 C 1.50700 * 119.97642 * 179.97438 * 21 19 18 23 23 F 1.39897 * 109.47560 * 179.97438 * 22 21 19 24 24 F 1.39901 * 109.47243 * 300.00049 * 22 21 19 25 25 F 1.39911 * 109.47104 * 59.99728 * 22 21 19 26 26 C 1.38111 * 120.05278 * 359.96880 * 21 19 18 27 27 H 0.97001 * 120.00083 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47435 * 59.99812 * 9 7 2 29 29 H 1.08994 * 109.46893 * 299.99444 * 9 7 2 30 30 H 0.96997 * 119.99855 * 359.97438 * 10 9 7 31 31 H 0.97003 * 120.00562 * 4.61993 * 15 13 11 32 32 H 1.08001 * 120.02643 * 0.03898 * 17 16 15 33 33 H 1.08000 * 119.97133 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.03054 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5606 -5.1052 0.0011 13 6 2.7243 -6.0185 0.0005 14 8 3.9177 -5.7968 0.0000 15 7 2.2750 -7.2892 0.0005 16 6 3.1798 -8.3506 0.0975 17 6 4.4285 -8.2574 -0.5044 18 6 5.3203 -9.3072 -0.4078 19 6 4.9706 -10.4526 0.2881 20 9 5.8469 -11.4762 0.3862 21 6 3.7262 -10.5480 0.8878 22 6 3.3484 -11.7958 1.6437 23 9 2.0541 -11.6568 2.1561 24 9 3.3931 -12.8956 0.7803 25 9 4.2478 -11.9932 2.6972 26 6 2.8310 -9.5006 0.7939 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 3.1566 -3.4355 0.0002 31 1 1.3239 -7.4674 -0.0668 32 1 4.7016 -7.3646 -1.0473 33 1 6.2913 -9.2350 -0.8751 34 1 1.8606 -9.5753 1.2622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427867792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:12 Heat of formation + Delta-G solvation = -234.833967 kcal Electronic energy + Delta-G solvation = -27447.117234 eV Core-core repulsion = 22458.923012 eV Total energy + Delta-G solvation = -4988.194222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.073 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.56816 -49.43374 -48.01323 -47.96488 -41.15700 -39.41956 -38.05276 -35.47312 -34.34925 -32.56654 -32.47274 -30.10036 -27.85609 -26.55376 -25.10056 -23.40820 -22.97316 -21.75030 -20.22173 -19.32033 -18.86223 -18.84529 -18.58723 -18.01796 -16.97654 -16.61319 -16.43763 -16.11062 -15.72008 -15.61542 -15.12251 -15.01131 -14.82175 -14.62991 -14.40065 -14.39768 -14.12730 -14.11566 -14.08107 -13.87248 -13.40738 -13.28231 -13.01683 -12.84730 -12.14648 -12.03284 -11.89170 -11.43974 -11.08873 -10.98073 -10.76601 -10.40517 -9.88936 -9.56981 -9.33855 -8.92175 -8.65485 -8.23082 -6.29296 -4.37225 0.25809 0.45972 1.53970 2.11808 2.37892 2.83686 3.18711 3.23255 3.25504 3.28128 3.43796 3.46303 3.69317 3.82139 3.99953 4.19111 4.25476 4.52007 4.61832 4.80122 4.94361 5.07492 5.07761 5.28628 5.59623 5.60894 5.78735 6.25406 6.72998 6.95225 7.01716 7.26180 7.42690 7.59380 7.78183 8.23211 8.42436 8.72705 9.29551 10.80679 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.028350 B = 0.002138 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.431120 B =13091.654411 C =13652.135267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.246 3.754 10 N -0.667 5.667 11 C 0.492 3.508 12 O -0.533 6.533 13 C 0.513 3.487 14 O -0.502 6.502 15 N -0.650 5.650 16 C 0.142 3.858 17 C -0.061 4.061 18 C -0.132 4.132 19 C 0.133 3.867 20 F -0.125 7.125 21 C -0.204 4.204 22 C 0.516 3.484 23 F -0.172 7.172 24 F -0.172 7.172 25 F -0.171 7.171 26 C -0.070 4.070 27 H 0.268 0.732 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.405 0.595 31 H 0.428 0.572 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.144 -22.540 0.168 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.085 0.915 9 C 0.126 3.874 10 N -0.316 5.316 11 C 0.270 3.730 12 O -0.411 6.411 13 C 0.296 3.704 14 O -0.375 6.375 15 N -0.298 5.298 16 C 0.047 3.953 17 C -0.081 4.081 18 C -0.151 4.151 19 C 0.112 3.888 20 F -0.103 7.103 21 C -0.207 4.207 22 C 0.461 3.539 23 F -0.153 7.153 24 F -0.153 7.153 25 F -0.153 7.153 26 C -0.091 4.091 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.240 0.760 31 H 0.267 0.733 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.954 -22.339 0.210 23.714 hybrid contribution 0.445 0.475 0.173 0.674 sum 8.399 -21.865 0.383 23.425 Atomic orbital electron populations 1.69958 1.06132 1.27628 1.48430 1.24938 0.94957 0.99563 0.94378 0.86355 0.79655 0.82259 0.78352 1.20336 1.20916 1.19605 1.21184 0.93508 0.90036 1.53947 0.91513 1.19386 0.88096 0.81372 0.98513 1.46448 1.12834 1.04903 1.67453 1.19544 0.87978 0.84406 0.81087 1.90758 1.15591 1.84405 1.50380 1.21042 0.89452 0.84058 0.75865 1.90732 1.16424 1.84511 1.45847 1.43217 1.11364 1.03777 1.71422 1.17605 0.91784 0.88186 0.97763 1.21525 0.91768 0.99023 0.95795 1.21108 1.01947 0.91385 1.00672 1.17269 0.86351 0.86278 0.98872 1.91574 1.67490 1.57052 1.94211 1.19749 0.96718 0.96527 1.07673 1.17947 0.74799 0.83493 0.77633 1.93190 1.38625 1.95770 1.87746 1.93242 1.96098 1.56294 1.69691 1.93250 1.67702 1.95645 1.58673 1.20650 1.00365 0.91353 0.96709 0.92241 0.94582 0.94583 0.76004 0.73277 0.82039 0.82837 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 13.29 55.43 0.74 -24.06 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -14.15 9.28 -34.44 -0.32 -14.47 16 8 H 0.07 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.03 5.43 -5.19 -0.03 6.00 16 10 N -0.67 -13.20 5.54 -61.94 -0.34 -13.55 16 11 C 0.49 8.81 7.89 -11.63 -0.09 8.72 16 12 O -0.53 -10.71 16.48 5.49 0.09 -10.62 16 13 C 0.51 7.33 7.73 -11.63 -0.09 7.24 16 14 O -0.50 -7.61 13.91 5.47 0.08 -7.53 16 15 N -0.65 -7.19 5.32 -10.28 -0.05 -7.24 16 16 C 0.14 1.42 6.30 -83.72 -0.53 0.89 16 17 C -0.06 -0.59 8.69 -39.38 -0.34 -0.93 16 18 C -0.13 -1.11 10.02 -39.54 -0.40 -1.50 16 19 C 0.13 1.26 7.13 -39.40 -0.28 0.98 16 20 F -0.12 -1.27 16.45 2.25 0.04 -1.23 16 21 C -0.20 -1.93 5.37 -104.59 -0.56 -2.49 16 22 C 0.52 5.04 3.02 36.01 0.11 5.15 16 23 F -0.17 -1.61 15.97 2.25 0.04 -1.58 16 24 F -0.17 -1.75 17.06 2.25 0.04 -1.71 16 25 F -0.17 -1.82 17.04 2.25 0.04 -1.78 16 26 C -0.07 -0.62 9.35 -39.38 -0.37 -0.99 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.41 7.35 7.79 -40.82 -0.32 7.03 16 31 H 0.43 4.08 8.30 -40.82 -0.34 3.75 16 32 H 0.16 1.65 6.22 -52.49 -0.33 1.33 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.16 1.10 7.15 -52.49 -0.38 0.72 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -29.13 327.29 -4.59 -33.72 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.16 Total: 5.32 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: -2.99 Total: 10.23 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.34 Total: -44.85 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.17 Total: -18.16 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.15 Total: -6.30 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.13 -4.59 -33.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427867792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.111 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds