Wall clock time and date at job start Tue Mar 31 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48500 * 109.46803 * 269.99779 * 3 2 1 5 5 H 1.48497 * 109.47155 * 29.99529 * 3 2 1 6 6 H 1.48492 * 109.47414 * 150.00082 * 3 2 1 7 7 C 1.37880 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99660 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46994 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99904 * 179.97438 * 10 9 7 12 12 O 1.21359 * 120.00347 * 0.02562 * 11 10 9 13 13 C 1.49351 * 119.99739 * 179.97438 * 11 10 9 14 14 O 1.21379 * 120.00417 * 0.02562 * 13 11 10 15 15 N 1.34773 * 119.99739 * 180.02562 * 13 11 10 16 16 C 1.39809 * 120.00135 * 184.61973 * 15 13 11 17 17 C 1.38932 * 120.04946 * 324.88585 * 16 15 13 18 18 C 1.38074 * 119.94842 * 180.02562 * 17 16 15 19 19 C 1.38509 * 120.05108 * 0.02562 * 18 17 16 20 20 F 1.35105 * 119.94958 * 180.27964 * 19 18 17 21 21 C 1.38463 * 120.10213 * 0.02562 * 19 18 17 22 22 C 1.50700 * 119.97642 * 179.97438 * 21 19 18 23 23 F 1.39897 * 109.47560 * 179.97438 * 22 21 19 24 24 F 1.39901 * 109.47243 * 300.00049 * 22 21 19 25 25 F 1.39911 * 109.47104 * 59.99728 * 22 21 19 26 26 C 1.38111 * 120.05278 * 359.96880 * 21 19 18 27 27 H 0.97001 * 120.00083 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47435 * 59.99812 * 9 7 2 29 29 H 1.08994 * 109.46893 * 299.99444 * 9 7 2 30 30 H 0.96997 * 119.99855 * 359.97438 * 10 9 7 31 31 H 0.97003 * 120.00562 * 4.61993 * 15 13 11 32 32 H 1.08001 * 120.02643 * 0.03898 * 17 16 15 33 33 H 1.08000 * 119.97133 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.03054 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5606 -5.1052 0.0011 13 6 2.7243 -6.0185 0.0005 14 8 3.9177 -5.7968 0.0000 15 7 2.2750 -7.2892 0.0005 16 6 3.1798 -8.3506 0.0975 17 6 4.4285 -8.2574 -0.5044 18 6 5.3203 -9.3072 -0.4078 19 6 4.9706 -10.4526 0.2881 20 9 5.8469 -11.4762 0.3862 21 6 3.7262 -10.5480 0.8878 22 6 3.3484 -11.7958 1.6437 23 9 2.0541 -11.6568 2.1561 24 9 3.3931 -12.8956 0.7803 25 9 4.2478 -11.9932 2.6972 26 6 2.8310 -9.5006 0.7939 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 3.1566 -3.4355 0.0002 31 1 1.3239 -7.4674 -0.0668 32 1 4.7016 -7.3646 -1.0473 33 1 6.2913 -9.2350 -0.8751 34 1 1.8606 -9.5753 1.2622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427867792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:12 Heat of formation + Delta-G solvation = -254.045924 kcal Electronic energy + Delta-G solvation = -27447.950327 eV Core-core repulsion = 22458.923012 eV Total energy + Delta-G solvation = -4989.027315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.073 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.34774 -50.20100 -48.78295 -48.76411 -42.24549 -40.55474 -39.29897 -36.72500 -35.86722 -34.36414 -33.30072 -30.98518 -29.68194 -27.32930 -26.50955 -24.51509 -24.12955 -22.93242 -21.52928 -20.41732 -19.82603 -19.64662 -19.51002 -18.83719 -18.33021 -17.87000 -17.47017 -17.10242 -17.01081 -16.87573 -16.66926 -15.97681 -15.74356 -15.61426 -15.44401 -15.35241 -15.18447 -14.93419 -14.91259 -14.88173 -14.64790 -14.26903 -14.07294 -13.96574 -13.76532 -13.61585 -13.01986 -12.84645 -12.72675 -12.48646 -12.21356 -11.66378 -11.52160 -10.83782 -10.81028 -10.55540 -10.05388 -9.48517 -8.30876 -6.46594 -0.53692 -0.29741 0.32731 1.10354 1.44925 1.46356 1.47209 1.58164 1.94236 2.21632 2.35349 2.46306 2.59942 2.72539 2.97775 3.05084 3.22222 3.37522 3.52772 3.77603 3.89844 4.04793 4.40601 4.56730 4.82734 4.85867 4.96696 4.99919 5.18956 5.25612 5.44381 5.52205 5.77739 5.83089 6.38871 6.57845 6.68322 6.99799 7.26620 8.80614 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.028350 B = 0.002138 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.431120 B =13091.654411 C =13652.135267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.263 3.737 10 N -0.671 5.671 11 C 0.494 3.506 12 O -0.556 6.556 13 C 0.527 3.473 14 O -0.509 6.509 15 N -0.633 5.633 16 C 0.127 3.873 17 C -0.063 4.063 18 C -0.121 4.121 19 C 0.129 3.871 20 F -0.129 7.129 21 C -0.209 4.209 22 C 0.517 3.483 23 F -0.169 7.169 24 F -0.175 7.175 25 F -0.177 7.177 26 C -0.058 4.058 27 H 0.270 0.730 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.414 0.586 31 H 0.436 0.564 32 H 0.158 0.842 33 H 0.179 0.821 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -23.060 0.114 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.598 4.598 8 H 0.099 0.901 9 C 0.141 3.859 10 N -0.321 5.321 11 C 0.274 3.726 12 O -0.435 6.435 13 C 0.309 3.691 14 O -0.383 6.383 15 N -0.280 5.280 16 C 0.033 3.967 17 C -0.083 4.083 18 C -0.140 4.140 19 C 0.109 3.891 20 F -0.107 7.107 21 C -0.212 4.212 22 C 0.462 3.538 23 F -0.151 7.151 24 F -0.156 7.156 25 F -0.158 7.158 26 C -0.079 4.079 27 H 0.079 0.921 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.251 0.749 31 H 0.276 0.724 32 H 0.176 0.824 33 H 0.196 0.804 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.623 -22.925 0.155 24.863 hybrid contribution -0.085 0.474 0.192 0.519 sum 9.538 -22.451 0.347 24.395 Atomic orbital electron populations 1.70092 1.07963 1.28700 1.49609 1.25934 0.95761 1.03510 0.93771 0.85220 0.78503 0.77323 0.78609 1.19611 1.20874 1.18315 1.21575 0.94324 0.90555 1.53392 0.90103 1.18835 0.88319 0.83063 0.95691 1.46141 1.12509 1.04836 1.68629 1.20110 0.88363 0.84777 0.79367 1.90743 1.17085 1.84920 1.50787 1.20048 0.88245 0.84036 0.76747 1.90743 1.16131 1.84647 1.46767 1.42976 1.12078 1.02843 1.70144 1.17669 0.91876 0.88090 0.99075 1.21562 0.91790 0.99276 0.95712 1.21290 1.02623 0.90295 0.99830 1.17444 0.86290 0.86479 0.98934 1.91569 1.67621 1.57296 1.94241 1.19788 0.96979 0.96531 1.07915 1.17966 0.74790 0.83524 0.77470 1.93195 1.38412 1.95747 1.87718 1.93237 1.96115 1.56518 1.69763 1.93239 1.67951 1.95689 1.58968 1.20734 1.00865 0.90424 0.95829 0.92084 0.97533 0.97644 0.74896 0.72362 0.82408 0.80389 0.81036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.90 13.29 21.45 0.28 -52.62 16 2 C 0.01 0.57 5.46 84.66 0.46 1.03 16 3 Si 0.98 40.87 29.54 68.60 2.03 42.89 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.56 -29.08 9.28 25.60 0.24 -28.84 16 8 H 0.08 3.87 7.60 -2.91 -0.02 3.85 16 9 C 0.26 13.29 5.43 85.63 0.46 13.75 16 10 N -0.67 -26.80 5.54 -468.24 -2.59 -29.40 16 11 C 0.49 17.69 7.89 87.24 0.69 18.38 16 12 O -0.56 -22.63 16.48 -3.28 -0.05 -22.68 16 13 C 0.53 14.46 7.73 87.24 0.67 15.13 16 14 O -0.51 -14.64 13.91 -3.34 -0.05 -14.68 16 15 N -0.63 -12.97 5.32 -304.80 -1.62 -14.60 16 16 C 0.13 2.29 6.30 38.19 0.24 2.53 16 17 C -0.06 -1.09 8.69 22.40 0.19 -0.90 16 18 C -0.12 -1.74 10.02 22.30 0.22 -1.51 16 19 C 0.13 2.17 7.13 22.39 0.16 2.33 16 20 F -0.13 -2.38 16.45 44.97 0.74 -1.64 16 21 C -0.21 -3.56 5.37 -19.84 -0.11 -3.67 16 22 C 0.52 9.28 3.02 71.24 0.22 9.50 16 23 F -0.17 -2.89 15.97 44.97 0.72 -2.17 16 24 F -0.18 -3.33 17.06 44.97 0.77 -2.56 16 25 F -0.18 -3.52 17.04 44.97 0.77 -2.76 16 26 C -0.06 -0.90 9.35 22.40 0.21 -0.70 16 27 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.41 14.88 7.79 -92.71 -0.72 14.16 16 31 H 0.44 7.66 8.30 -92.71 -0.77 6.89 16 32 H 0.16 2.92 6.22 -2.91 -0.02 2.90 16 33 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.17 2.02 7.15 -2.91 -0.02 2.00 16 Total: -1.00 -62.58 327.29 4.38 -58.19 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -0.26 Total: 14.97 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 3.66 Total: 27.05 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.93 Total: -96.61 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.10 Total: -37.37 kcal Atomic # 9 Polarization: -12.12 SS G_CDS: 2.99 Total: -9.13 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -62.58 4.38 -58.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427867792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.852 kcal (2) G-P(sol) polarization free energy of solvation -62.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds