Wall clock time and date at job start Tue Mar 31 2020 17:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34734 * 117.00232 * 2 1 4 4 O 1.21494 * 119.99709 * 0.02562 * 3 2 1 5 5 C 1.47561 * 120.00125 * 179.97438 * 3 2 1 6 6 N 1.30650 * 122.11992 * 354.57620 * 5 3 2 7 7 S 1.56141 * 109.79968 * 180.27094 * 6 5 3 8 8 C 1.71757 * 97.27918 * 359.72355 * 7 6 5 9 9 C 1.34979 * 105.46582 * 359.97438 * 8 7 6 10 10 S 1.76204 * 124.15320 * 180.02562 * 9 8 7 11 11 O 1.42103 * 106.40149 * 127.36072 * 10 9 8 12 12 O 1.42096 * 106.40436 * 260.27704 * 10 9 8 13 13 N 1.65601 * 107.22231 * 13.82372 * 10 9 8 14 14 C 1.46505 * 119.99366 * 274.88999 * 13 10 9 15 15 C 1.46498 * 120.00392 * 94.88589 * 13 10 9 16 16 H 1.08995 * 109.46815 * 4.40851 * 15 13 10 17 17 C 1.52993 * 109.47006 * 124.40877 * 15 13 10 18 18 C 1.50694 * 109.47166 * 244.40866 * 15 13 10 19 19 H 1.07999 * 120.00153 * 0.02562 * 18 15 13 20 20 C 1.37878 * 120.00403 * 179.97438 * 18 15 13 21 21 N 1.31509 * 120.00442 * 180.02562 * 20 18 15 22 22 Si 1.86807 * 119.99247 * 0.02562 * 20 18 15 23 23 H 1.48497 * 109.46928 * 90.00184 * 22 20 18 24 24 H 1.48503 * 109.46539 * 209.99828 * 22 20 18 25 25 H 1.48493 * 109.47370 * 329.99568 * 22 20 18 26 26 H 1.08999 * 109.47336 * 299.99666 * 1 2 3 27 27 H 1.08997 * 109.47380 * 59.99979 * 1 2 3 28 28 H 1.09004 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.08005 * 127.26590 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.46960 * 90.00187 * 14 13 10 31 31 H 1.09007 * 109.46769 * 209.99719 * 14 13 10 32 32 H 1.08996 * 109.47089 * 329.99267 * 14 13 10 33 33 H 1.09000 * 109.47275 * 180.02562 * 17 15 13 34 34 H 1.09005 * 109.47353 * 299.99763 * 17 15 13 35 35 H 1.08998 * 109.47248 * 59.99794 * 17 15 13 36 36 H 0.97000 * 119.99940 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5373 1.2777 0.0006 6 7 4.2886 0.2140 0.1057 7 16 5.7946 0.6256 0.0816 8 6 5.5548 2.3182 -0.0850 9 6 4.2165 2.4908 -0.1165 10 16 3.4246 4.0566 -0.2776 11 8 2.5171 3.9373 -1.3646 12 8 3.0240 4.4402 1.0307 13 7 4.5803 5.1443 -0.7506 14 6 5.4222 5.8010 0.2525 15 6 4.7609 5.4496 -2.1720 16 1 4.0002 4.9301 -2.7546 17 6 4.6287 6.9581 -2.3903 18 6 6.1285 4.9961 -2.6134 19 1 6.7962 4.5269 -1.9060 20 6 6.5270 5.1791 -3.9205 21 7 7.7203 4.7829 -4.3059 22 14 5.3717 5.9900 -5.1442 23 1 5.5903 7.4588 -5.1329 24 1 5.6408 5.4599 -6.5050 25 1 3.9658 5.6958 -4.7675 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 6.3147 3.0829 -0.1516 30 1 6.3164 5.2022 0.4246 31 1 5.7101 6.7895 -0.1057 32 1 4.8662 5.9003 1.1848 33 1 4.7626 7.1853 -3.4479 34 1 3.6394 7.2862 -2.0710 35 1 5.3893 7.4776 -1.8075 36 1 8.0004 4.9113 -5.2256 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443069736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:24 Heat of formation + Delta-G solvation = -87.366292 kcal Electronic energy + Delta-G solvation = -25788.006616 eV Core-core repulsion = 21913.887845 eV Total energy + Delta-G solvation = -3874.118771 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.87263 -39.01682 -36.71339 -36.70727 -36.42846 -35.23429 -32.65017 -31.98270 -30.08294 -28.61403 -26.48241 -25.96867 -25.04772 -22.87395 -21.19917 -20.58338 -19.15554 -18.44463 -17.81189 -17.25467 -16.86599 -16.65187 -16.39689 -15.73946 -15.63687 -14.96179 -14.57298 -14.30039 -13.78107 -13.69028 -13.34169 -13.22612 -12.90043 -12.41302 -12.31585 -12.16224 -12.00200 -11.87439 -11.57612 -11.50990 -11.43226 -11.26081 -11.07431 -10.95518 -10.88091 -10.57267 -10.47991 -10.24615 -10.17770 -9.64687 -9.52642 -9.15882 -8.73558 -8.24380 -6.26129 -4.28025 0.34466 0.71260 1.04758 1.35184 1.55134 2.48794 2.72071 3.18578 3.32347 3.35308 3.48230 4.06875 4.27083 4.51075 4.63886 5.00842 5.05998 5.09365 5.11528 5.14789 5.40198 5.41550 5.50133 5.84310 5.96688 6.07803 6.10528 6.19719 6.32188 6.40674 6.49970 6.79384 7.19167 7.28139 7.48736 7.52315 8.30734 8.71442 9.35341 10.85802 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.005236 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.844016 B = 5346.240055 C = 5774.838773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.334 6.334 3 C 0.534 3.466 4 O -0.474 6.474 5 C 0.135 3.865 6 N -0.503 5.503 7 S 0.519 5.481 8 C -0.156 4.156 9 C -0.682 4.682 10 S 2.718 3.282 11 O -0.934 6.934 12 O -0.956 6.956 13 N -0.977 5.977 14 C 0.090 3.910 15 C 0.232 3.768 16 H 0.065 0.935 17 C -0.159 4.159 18 C -0.533 4.533 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.892 5.892 22 Si 0.875 3.125 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.259 1.259 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.211 0.789 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -6.851 9.763 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.249 6.249 3 C 0.372 3.628 4 O -0.359 6.359 5 C -0.039 4.039 6 N -0.338 5.338 7 S 0.674 5.326 8 C -0.305 4.305 9 C -0.777 4.777 10 S 2.800 3.200 11 O -0.924 6.924 12 O -0.946 6.946 13 N -0.818 5.818 14 C -0.056 4.056 15 C 0.127 3.873 16 H 0.082 0.918 17 C -0.218 4.218 18 C -0.572 4.572 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.529 5.529 22 Si 0.704 3.296 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.184 1.184 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.227 0.773 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.856 -8.438 9.974 13.938 hybrid contribution -0.892 1.571 -1.138 2.135 sum -5.748 -6.868 8.836 12.581 Atomic orbital electron populations 1.23437 0.75375 1.04058 1.03310 1.86612 1.23795 1.30797 1.83682 1.20041 0.86625 0.82481 0.73658 1.90962 1.65222 1.35521 1.44163 1.19238 0.92203 0.86801 1.05618 1.72228 1.07517 1.32035 1.22019 1.80518 1.03885 0.95384 1.52841 1.27396 0.98415 1.07457 0.97229 1.31812 1.04410 1.23333 1.18171 1.01702 0.72700 0.71896 0.73712 1.93555 1.58784 1.85708 1.54353 1.93520 1.79870 1.81154 1.40073 1.57322 1.54450 1.54808 1.15264 1.21468 0.94257 0.99500 0.90385 1.19242 0.99160 0.93108 0.75757 0.91764 1.22411 0.99883 0.98750 1.00713 1.21178 0.98729 1.40966 0.96323 0.90095 1.24858 0.94872 0.94790 0.97990 1.69850 1.18478 1.46511 1.18064 0.87039 0.82531 0.79545 0.80489 1.20136 1.22079 1.18386 0.91375 0.91112 0.87621 0.77254 0.93333 0.89813 0.91276 0.93069 0.94390 0.91997 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.41 16 2 O -0.33 -5.13 10.46 -40.59 -0.42 -5.55 16 3 C 0.53 9.81 7.92 34.53 0.27 10.08 16 4 O -0.47 -9.69 12.96 -27.28 -0.35 -10.04 16 5 C 0.13 2.43 6.66 -84.09 -0.56 1.87 16 6 N -0.50 -8.00 11.21 24.87 0.28 -7.72 16 7 S 0.52 6.52 23.20 -107.50 -2.49 4.02 16 8 C -0.16 -2.35 10.97 29.57 0.32 -2.03 16 9 C -0.68 -12.44 5.91 -40.26 -0.24 -12.68 16 10 S 2.72 55.75 4.27 -107.50 -0.46 55.29 16 11 O -0.93 -21.88 14.50 -66.40 -0.96 -22.84 16 12 O -0.96 -20.18 16.62 -58.89 -0.98 -21.16 16 13 N -0.98 -18.99 2.76 -115.86 -0.32 -19.31 16 14 C 0.09 1.41 10.12 59.85 0.61 2.01 16 15 C 0.23 5.17 2.26 -69.09 -0.16 5.01 16 16 H 0.06 1.56 5.79 -51.93 -0.30 1.26 16 17 C -0.16 -3.24 8.56 37.15 0.32 -2.92 16 18 C -0.53 -13.17 9.02 -34.44 -0.31 -13.48 16 19 H 0.08 2.03 7.73 -52.49 -0.41 1.62 16 20 C 0.08 2.07 5.45 -17.82 -0.10 1.98 16 21 N -0.89 -24.86 13.96 55.43 0.77 -24.09 16 22 Si 0.87 20.65 24.37 -169.99 -4.14 16.51 16 23 H -0.27 -6.23 6.87 56.52 0.39 -5.85 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.26 -6.05 6.53 56.52 0.37 -5.68 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.21 2.82 7.00 -52.48 -0.37 2.45 16 30 H 0.05 0.67 7.37 -51.93 -0.38 0.28 16 31 H 0.08 1.25 6.21 -51.92 -0.32 0.93 16 32 H 0.07 0.98 7.07 -51.93 -0.37 0.61 16 33 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.15 6.53 -51.93 -0.34 0.81 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -33.50 324.11 -6.50 -40.00 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.53 Total: -1.27 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 1.23 Total: -8.73 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.73 Total: -51.11 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -2.72 Total: -59.59 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.14 Total: 16.51 kcal Atomic # 16 Polarization: 62.26 SS G_CDS: -2.95 Total: 59.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.50 -6.50 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443069736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.369 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds