Wall clock time and date at job start Tue Mar 31 2020 17:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34734 * 117.00232 * 2 1 4 4 O 1.21494 * 119.99709 * 0.02562 * 3 2 1 5 5 C 1.47561 * 120.00125 * 179.97438 * 3 2 1 6 6 N 1.30650 * 122.11992 * 354.57620 * 5 3 2 7 7 S 1.56141 * 109.79968 * 180.27094 * 6 5 3 8 8 C 1.71757 * 97.27918 * 359.72355 * 7 6 5 9 9 C 1.34979 * 105.46582 * 359.97438 * 8 7 6 10 10 S 1.76204 * 124.15320 * 180.02562 * 9 8 7 11 11 O 1.42103 * 106.40149 * 127.36072 * 10 9 8 12 12 O 1.42096 * 106.40436 * 260.27704 * 10 9 8 13 13 N 1.65601 * 107.22231 * 13.82372 * 10 9 8 14 14 C 1.46505 * 119.99366 * 274.88999 * 13 10 9 15 15 C 1.46498 * 120.00392 * 94.88589 * 13 10 9 16 16 H 1.08995 * 109.46815 * 4.40851 * 15 13 10 17 17 C 1.52993 * 109.47006 * 124.40877 * 15 13 10 18 18 C 1.50694 * 109.47166 * 244.40866 * 15 13 10 19 19 H 1.07999 * 120.00153 * 0.02562 * 18 15 13 20 20 C 1.37878 * 120.00403 * 179.97438 * 18 15 13 21 21 N 1.31509 * 120.00442 * 180.02562 * 20 18 15 22 22 Si 1.86807 * 119.99247 * 0.02562 * 20 18 15 23 23 H 1.48497 * 109.46928 * 90.00184 * 22 20 18 24 24 H 1.48503 * 109.46539 * 209.99828 * 22 20 18 25 25 H 1.48493 * 109.47370 * 329.99568 * 22 20 18 26 26 H 1.08999 * 109.47336 * 299.99666 * 1 2 3 27 27 H 1.08997 * 109.47380 * 59.99979 * 1 2 3 28 28 H 1.09004 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.08005 * 127.26590 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.46960 * 90.00187 * 14 13 10 31 31 H 1.09007 * 109.46769 * 209.99719 * 14 13 10 32 32 H 1.08996 * 109.47089 * 329.99267 * 14 13 10 33 33 H 1.09000 * 109.47275 * 180.02562 * 17 15 13 34 34 H 1.09005 * 109.47353 * 299.99763 * 17 15 13 35 35 H 1.08998 * 109.47248 * 59.99794 * 17 15 13 36 36 H 0.97000 * 119.99940 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5373 1.2777 0.0006 6 7 4.2886 0.2140 0.1057 7 16 5.7946 0.6256 0.0816 8 6 5.5548 2.3182 -0.0850 9 6 4.2165 2.4908 -0.1165 10 16 3.4246 4.0566 -0.2776 11 8 2.5171 3.9373 -1.3646 12 8 3.0240 4.4402 1.0307 13 7 4.5803 5.1443 -0.7506 14 6 5.4222 5.8010 0.2525 15 6 4.7609 5.4496 -2.1720 16 1 4.0002 4.9301 -2.7546 17 6 4.6287 6.9581 -2.3903 18 6 6.1285 4.9961 -2.6134 19 1 6.7962 4.5269 -1.9060 20 6 6.5270 5.1791 -3.9205 21 7 7.7203 4.7829 -4.3059 22 14 5.3717 5.9900 -5.1442 23 1 5.5903 7.4588 -5.1329 24 1 5.6408 5.4599 -6.5050 25 1 3.9658 5.6958 -4.7675 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 6.3147 3.0829 -0.1516 30 1 6.3164 5.2022 0.4246 31 1 5.7101 6.7895 -0.1057 32 1 4.8662 5.9003 1.1848 33 1 4.7626 7.1853 -3.4479 34 1 3.6394 7.2862 -2.0710 35 1 5.3893 7.4776 -1.8075 36 1 8.0004 4.9113 -5.2256 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443069736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:23 Heat of formation + Delta-G solvation = -112.780914 kcal Electronic energy + Delta-G solvation = -25789.108677 eV Core-core repulsion = 21913.887845 eV Total energy + Delta-G solvation = -3875.220832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.14728 -40.25859 -38.35834 -38.18442 -37.83636 -36.86613 -34.52812 -33.25356 -31.75651 -29.72076 -27.61075 -27.42089 -26.83424 -24.15232 -22.79829 -22.00879 -20.44246 -19.75576 -19.33495 -18.83243 -18.38898 -17.95956 -17.90028 -17.29082 -17.06998 -16.53041 -15.96831 -15.49776 -15.37945 -15.04226 -14.75461 -14.54282 -14.41006 -14.14793 -13.82880 -13.55234 -13.36245 -13.22909 -13.07461 -13.05376 -12.93548 -12.79049 -12.72173 -12.33805 -12.14025 -12.00538 -11.96159 -11.84401 -11.52833 -11.45516 -11.29612 -10.71422 -10.29040 -9.81624 -8.27497 -6.29443 -0.87628 -0.77149 -0.28868 0.19040 0.35184 1.28638 1.31533 1.42394 1.42683 1.48552 1.99987 2.34057 2.57831 3.08323 3.24640 3.41709 3.56166 3.84099 4.07116 4.19443 4.20903 4.25421 4.48781 4.56607 4.62388 4.67623 4.71902 4.81984 4.89535 4.94351 5.11334 5.18470 5.48374 5.58732 5.82505 6.21303 6.34453 6.73910 7.36062 8.86444 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.005236 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.844016 B = 5346.240055 C = 5774.838773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.527 3.473 4 O -0.507 6.507 5 C 0.108 3.892 6 N -0.520 5.520 7 S 0.635 5.365 8 C -0.170 4.170 9 C -0.706 4.706 10 S 2.725 3.275 11 O -0.974 6.974 12 O -0.971 6.971 13 N -0.977 5.977 14 C 0.078 3.922 15 C 0.232 3.768 16 H 0.043 0.957 17 C -0.160 4.160 18 C -0.517 4.517 19 H 0.075 0.925 20 C 0.035 3.965 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.258 1.258 24 H -0.300 1.300 25 H -0.261 1.261 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.225 0.775 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 -7.436 10.659 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.250 6.250 3 C 0.367 3.633 4 O -0.395 6.395 5 C -0.063 4.063 6 N -0.357 5.357 7 S 0.789 5.211 8 C -0.318 4.318 9 C -0.804 4.804 10 S 2.810 3.190 11 O -0.964 6.964 12 O -0.961 6.961 13 N -0.818 5.818 14 C -0.067 4.067 15 C 0.126 3.874 16 H 0.060 0.940 17 C -0.219 4.219 18 C -0.557 4.557 19 H 0.093 0.907 20 C -0.165 4.165 21 N -0.569 5.569 22 Si 0.739 3.261 23 H -0.184 1.184 24 H -0.228 1.228 25 H -0.185 1.185 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.165 0.835 29 H 0.241 0.759 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.157 -8.981 10.892 14.717 hybrid contribution -1.031 1.552 -1.312 2.279 sum -5.188 -7.430 9.580 13.187 Atomic orbital electron populations 1.23860 0.73096 1.06783 1.03427 1.86605 1.26074 1.29352 1.82938 1.20333 0.87149 0.82805 0.73021 1.90930 1.65989 1.36573 1.46011 1.19171 0.92358 0.87167 1.07639 1.71945 1.09647 1.32250 1.21854 1.80131 1.00565 0.91950 1.48479 1.27717 0.97589 1.10030 0.96478 1.31418 1.05661 1.22408 1.20904 1.01067 0.72654 0.72385 0.72846 1.93497 1.60799 1.86517 1.55554 1.93486 1.80458 1.81919 1.40270 1.57159 1.54859 1.55177 1.14614 1.21798 0.94781 1.00066 0.90021 1.19045 0.96990 0.94212 0.77116 0.93963 1.22385 1.01694 0.97266 1.00574 1.21412 0.99250 1.39181 0.95824 0.90698 1.25392 0.95722 0.95776 0.99581 1.69934 1.19944 1.48672 1.18372 0.86445 0.81130 0.79886 0.78651 1.18388 1.22794 1.18526 0.90852 0.91521 0.83539 0.75865 0.91271 0.88882 0.89858 0.93881 0.92647 0.90159 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.56 113.37 1.20 1.63 16 2 O -0.34 -10.18 10.46 -56.45 -0.59 -10.77 16 3 C 0.53 19.63 7.92 70.28 0.56 20.18 16 4 O -0.51 -21.39 12.96 27.52 0.36 -21.04 16 5 C 0.11 3.84 6.66 42.09 0.28 4.12 16 6 N -0.52 -15.60 11.21 -75.25 -0.84 -16.45 16 7 S 0.63 14.05 23.20 -56.49 -1.31 12.74 16 8 C -0.17 -4.79 10.97 67.07 0.74 -4.05 16 9 C -0.71 -25.33 5.91 21.83 0.13 -25.21 16 10 S 2.72 112.18 4.27 -56.49 -0.24 111.94 16 11 O -0.97 -46.86 14.50 -119.18 -1.73 -48.59 16 12 O -0.97 -41.14 16.62 -126.36 -2.10 -43.23 16 13 N -0.98 -36.97 2.76 -520.47 -1.44 -38.41 16 14 C 0.08 2.27 10.12 127.77 1.29 3.57 16 15 C 0.23 10.15 2.26 44.24 0.10 10.25 16 16 H 0.04 2.06 5.79 -2.39 -0.01 2.05 16 17 C -0.16 -6.26 8.56 71.98 0.62 -5.65 16 18 C -0.52 -25.08 9.02 25.60 0.23 -24.85 16 19 H 0.07 3.65 7.73 -2.91 -0.02 3.63 16 20 C 0.04 1.83 5.45 84.66 0.46 2.29 16 21 N -0.93 -51.63 13.96 21.45 0.30 -51.33 16 22 Si 0.91 41.91 24.37 68.60 1.67 43.58 16 23 H -0.26 -11.10 6.87 99.48 0.68 -10.42 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.26 -11.94 6.53 99.48 0.65 -11.30 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.15 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.22 5.49 7.00 -2.91 -0.02 5.47 16 30 H 0.07 1.72 7.37 -2.39 -0.02 1.71 16 31 H 0.09 2.55 6.21 -2.38 -0.01 2.53 16 32 H 0.08 2.21 7.07 -2.39 -0.02 2.19 16 33 H 0.04 1.75 3.27 -2.39 -0.01 1.74 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.93 16 35 H 0.08 2.80 6.53 -2.39 -0.02 2.78 16 36 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -72.97 324.11 0.74 -72.23 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.06 Total: 7.03 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 5.60 Total: -17.71 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -1.98 Total: -106.18 kcal Atomic # 8 Polarization: -119.57 SS G_CDS: -4.06 Total: -123.63 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.67 Total: 43.58 kcal Atomic # 16 Polarization: 126.23 SS G_CDS: -1.55 Total: 124.68 kcal Total: -72.97 0.74 -72.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443069736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.550 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds