Wall clock time and date at job start Tue Mar 31 2020 17:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47533 * 2 1 4 4 C 1.46498 * 119.99939 * 86.38339 * 3 2 1 5 5 C 1.50700 * 109.47166 * 85.00256 * 4 3 2 6 6 H 1.08000 * 119.99596 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00208 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99746 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00171 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47062 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47123 * 119.99888 * 9 7 5 12 12 H 1.48498 * 109.46949 * 239.99898 * 9 7 5 13 13 S 1.65598 * 119.99830 * 266.38548 * 3 2 1 14 14 O 1.42098 * 106.40005 * 209.10925 * 13 3 2 15 15 O 1.42101 * 106.40406 * 342.03331 * 13 3 2 16 16 C 1.76200 * 107.21813 * 95.56854 * 13 3 2 17 17 C 1.34983 * 124.15624 * 13.83982 * 16 13 3 18 18 S 1.71757 * 105.46699 * 179.97438 * 17 16 13 19 19 N 1.56146 * 97.28224 * 0.02562 * 18 17 16 20 20 C 1.30658 * 109.79259 * 359.71691 * 19 18 17 21 21 C 1.47559 * 122.11316 * 180.27483 * 20 19 18 22 22 O 1.21503 * 119.99863 * 174.62448 * 21 20 19 23 23 O 1.34739 * 120.00157 * 354.62948 * 21 20 19 24 24 C 1.45201 * 116.99645 * 180.02562 * 23 21 20 25 25 H 1.08995 * 109.47193 * 185.24637 * 1 2 3 26 26 H 1.08996 * 109.47001 * 305.25348 * 1 2 3 27 27 H 1.09001 * 109.46904 * 65.24794 * 1 2 3 28 28 H 1.08997 * 109.47147 * 239.99613 * 2 1 3 29 29 H 1.09001 * 109.46824 * 119.99705 * 2 1 3 30 30 H 1.08997 * 109.46878 * 205.00163 * 4 3 2 31 31 H 1.09005 * 109.46898 * 325.00130 * 4 3 2 32 32 H 0.97003 * 119.99961 * 179.97438 * 8 7 5 33 33 H 1.08002 * 127.26838 * 359.97049 * 17 16 13 34 34 H 1.09001 * 109.47074 * 299.99201 * 24 23 21 35 35 H 1.09000 * 109.47673 * 59.99715 * 24 23 21 36 36 H 1.09004 * 109.46837 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1872 2.0984 1.2662 5 6 3.5374 1.7737 1.8514 6 1 4.2030 1.1000 1.3323 7 6 3.9230 2.3365 3.0495 8 7 3.1126 3.1573 3.6814 9 14 5.5969 1.9345 3.7746 10 1 6.3126 0.9935 2.8758 11 1 6.3880 3.1832 3.9158 12 1 5.4206 1.3067 5.1087 13 16 2.3797 2.1316 -1.4313 14 8 3.3997 3.0777 -1.1420 15 8 2.5270 1.1012 -2.3987 16 6 0.9597 3.0604 -1.9062 17 6 -0.0764 3.3338 -1.0853 18 16 -1.1777 4.2542 -2.0288 19 7 -0.3462 4.2638 -3.3504 20 6 0.7705 3.6085 -3.1753 21 6 1.7665 3.4539 -4.2530 22 8 2.8342 2.9220 -4.0217 23 8 1.4922 3.9027 -5.4934 24 6 2.5183 3.7164 -6.5038 25 1 -0.3633 -1.0233 0.0940 26 1 -0.3633 0.5931 0.8392 27 1 -0.3633 0.4303 -0.9333 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.1170 3.1715 1.0880 31 1 1.4063 1.7939 1.9631 32 1 3.3837 3.5530 4.5245 33 1 -0.1891 3.0365 -0.0532 34 1 3.4269 4.2356 -6.1988 35 1 2.7281 2.6528 -6.6168 36 1 2.1699 4.1208 -7.4542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443079432.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:04 Heat of formation + Delta-G solvation = -100.323455 kcal Electronic energy + Delta-G solvation = -25547.374097 eV Core-core repulsion = 21672.693461 eV Total energy + Delta-G solvation = -3874.680636 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92290 -39.09857 -36.68329 -36.49392 -36.13735 -35.03999 -32.71967 -32.07206 -30.07851 -28.65713 -26.69696 -26.49580 -23.21748 -22.94186 -21.90879 -20.74859 -19.15729 -18.47035 -17.80025 -17.12046 -16.69587 -16.59550 -16.33102 -15.73733 -15.49734 -14.96747 -14.38974 -14.34959 -13.86585 -13.72041 -13.41048 -13.25208 -12.98902 -12.40994 -12.14973 -12.07839 -11.90587 -11.73015 -11.61998 -11.38315 -11.27588 -11.02621 -10.95718 -10.93350 -10.88657 -10.59408 -10.50635 -10.43193 -10.29864 -9.99303 -9.77928 -9.27400 -8.48088 -8.19171 -6.10399 -4.13329 0.21186 0.74936 0.95921 1.27293 1.44847 2.45243 2.65753 3.30782 3.38979 3.44626 3.62268 4.15955 4.42361 4.46803 4.61196 4.98934 5.00395 5.09957 5.21500 5.25812 5.29841 5.38342 5.40113 5.63157 5.67038 5.75224 5.93047 6.07180 6.21212 6.48479 6.56868 7.08534 7.29270 7.45568 7.51838 7.88361 8.14973 8.89584 9.52327 10.98559 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.015251 B = 0.004599 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.560570 B = 6086.474572 C = 6661.806937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.114 3.886 3 N -0.983 5.983 4 C 0.251 3.749 5 C -0.525 4.525 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.710 3.290 14 O -0.923 6.923 15 O -0.950 6.950 16 C -0.680 4.680 17 C -0.171 4.171 18 S 0.512 5.488 19 N -0.500 5.500 20 C 0.137 3.863 21 C 0.531 3.469 22 O -0.467 6.467 23 O -0.335 6.335 24 C 0.032 3.968 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.263 0.737 33 H 0.208 0.792 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 0.161 -12.470 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.012 4.012 3 N -0.825 5.825 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.537 5.537 9 Si 0.725 3.275 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.789 3.211 14 O -0.913 6.913 15 O -0.940 6.940 16 C -0.774 4.774 17 C -0.320 4.320 18 S 0.667 5.333 19 N -0.335 5.335 20 C -0.036 4.036 21 C 0.368 3.632 22 O -0.352 6.352 23 O -0.250 6.250 24 C -0.062 4.062 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.225 0.775 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.071 1.262 -13.428 18.100 hybrid contribution 1.874 -0.761 0.879 2.206 sum -10.197 0.501 -12.549 16.177 Atomic orbital electron populations 1.22310 0.97423 1.02211 1.01533 1.21236 0.92982 0.82823 1.04133 1.57647 1.81113 1.21318 1.22440 1.19181 0.97954 0.91206 0.78768 1.21499 1.01299 1.28052 1.05629 0.91810 1.24913 0.97535 0.94758 0.96751 1.69910 1.36326 1.30699 1.16738 0.86448 0.83933 0.78434 0.78729 1.19516 1.20785 1.20979 1.02162 0.72866 0.73662 0.72370 1.93611 1.50271 1.63484 1.83959 1.93503 1.84366 1.56143 1.59994 1.32146 1.24893 1.21030 0.99290 1.27351 0.97742 1.00320 1.06615 1.80471 1.21215 1.38688 0.92944 1.72266 1.10259 1.23030 1.27980 1.19281 0.92668 1.00033 0.91618 1.20029 0.84906 0.75902 0.82328 1.91001 1.23521 1.38349 1.82299 1.86604 1.46068 1.73948 1.18391 1.23446 0.90591 1.03229 0.88926 0.91684 0.91796 0.93598 0.90102 0.89040 0.94561 0.94173 0.92718 0.77540 0.91241 0.91152 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.90 6.37 -4.04 -0.03 1.87 16 3 N -0.98 -19.84 2.47 -115.66 -0.29 -20.12 16 4 C 0.25 5.89 4.98 -5.19 -0.03 5.87 16 5 C -0.53 -14.31 9.38 -34.44 -0.32 -14.64 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -25.26 13.29 55.43 0.74 -24.52 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 S 2.71 58.22 4.20 -107.50 -0.45 57.77 16 14 O -0.92 -23.65 17.10 -58.80 -1.01 -24.65 16 15 O -0.95 -21.13 14.56 -66.41 -0.97 -22.10 16 16 C -0.68 -11.97 5.91 -40.26 -0.24 -12.20 16 17 C -0.17 -2.33 10.97 29.58 0.32 -2.01 16 18 S 0.51 5.59 23.20 -107.50 -2.49 3.09 16 19 N -0.50 -7.40 11.22 24.87 0.28 -7.12 16 20 C 0.14 2.37 6.66 -84.08 -0.56 1.81 16 21 C 0.53 9.57 7.92 34.53 0.27 9.84 16 22 O -0.47 -9.65 12.95 -27.27 -0.35 -10.01 16 23 O -0.33 -4.98 10.47 -40.60 -0.42 -5.40 16 24 C 0.03 0.34 10.56 101.05 1.07 1.40 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.31 6.91 -51.93 -0.36 0.95 16 29 H 0.09 1.51 8.10 -51.93 -0.42 1.09 16 30 H 0.04 0.90 7.76 -51.93 -0.40 0.50 16 31 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.21 2.41 7.95 -52.49 -0.42 1.99 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -35.45 342.54 -8.15 -43.61 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -4.10 Total: -3.90 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 0.78 Total: -8.32 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.73 Total: -51.77 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -2.75 Total: -62.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 63.81 SS G_CDS: -2.95 Total: 60.86 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.45 -8.15 -43.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443079432.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.718 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds