Wall clock time and date at job start Tue Mar 31 2020 17:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47533 * 2 1 4 4 C 1.46498 * 119.99939 * 86.38339 * 3 2 1 5 5 C 1.50700 * 109.47166 * 85.00256 * 4 3 2 6 6 H 1.08000 * 119.99596 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00208 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99746 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00171 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47062 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47123 * 119.99888 * 9 7 5 12 12 H 1.48498 * 109.46949 * 239.99898 * 9 7 5 13 13 S 1.65598 * 119.99830 * 266.38548 * 3 2 1 14 14 O 1.42098 * 106.40005 * 209.10925 * 13 3 2 15 15 O 1.42101 * 106.40406 * 342.03331 * 13 3 2 16 16 C 1.76200 * 107.21813 * 95.56854 * 13 3 2 17 17 C 1.34983 * 124.15624 * 13.83982 * 16 13 3 18 18 S 1.71757 * 105.46699 * 179.97438 * 17 16 13 19 19 N 1.56146 * 97.28224 * 0.02562 * 18 17 16 20 20 C 1.30658 * 109.79259 * 359.71691 * 19 18 17 21 21 C 1.47559 * 122.11316 * 180.27483 * 20 19 18 22 22 O 1.21503 * 119.99863 * 174.62448 * 21 20 19 23 23 O 1.34739 * 120.00157 * 354.62948 * 21 20 19 24 24 C 1.45201 * 116.99645 * 180.02562 * 23 21 20 25 25 H 1.08995 * 109.47193 * 185.24637 * 1 2 3 26 26 H 1.08996 * 109.47001 * 305.25348 * 1 2 3 27 27 H 1.09001 * 109.46904 * 65.24794 * 1 2 3 28 28 H 1.08997 * 109.47147 * 239.99613 * 2 1 3 29 29 H 1.09001 * 109.46824 * 119.99705 * 2 1 3 30 30 H 1.08997 * 109.46878 * 205.00163 * 4 3 2 31 31 H 1.09005 * 109.46898 * 325.00130 * 4 3 2 32 32 H 0.97003 * 119.99961 * 179.97438 * 8 7 5 33 33 H 1.08002 * 127.26838 * 359.97049 * 17 16 13 34 34 H 1.09001 * 109.47074 * 299.99201 * 24 23 21 35 35 H 1.09000 * 109.47673 * 59.99715 * 24 23 21 36 36 H 1.09004 * 109.46837 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1872 2.0984 1.2662 5 6 3.5374 1.7737 1.8514 6 1 4.2030 1.1000 1.3323 7 6 3.9230 2.3365 3.0495 8 7 3.1126 3.1573 3.6814 9 14 5.5969 1.9345 3.7746 10 1 6.3126 0.9935 2.8758 11 1 6.3880 3.1832 3.9158 12 1 5.4206 1.3067 5.1087 13 16 2.3797 2.1316 -1.4313 14 8 3.3997 3.0777 -1.1420 15 8 2.5270 1.1012 -2.3987 16 6 0.9597 3.0604 -1.9062 17 6 -0.0764 3.3338 -1.0853 18 16 -1.1777 4.2542 -2.0288 19 7 -0.3462 4.2638 -3.3504 20 6 0.7705 3.6085 -3.1753 21 6 1.7665 3.4539 -4.2530 22 8 2.8342 2.9220 -4.0217 23 8 1.4922 3.9027 -5.4934 24 6 2.5183 3.7164 -6.5038 25 1 -0.3633 -1.0233 0.0940 26 1 -0.3633 0.5931 0.8392 27 1 -0.3633 0.4303 -0.9333 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.1170 3.1715 1.0880 31 1 1.4063 1.7939 1.9631 32 1 3.3837 3.5530 4.5245 33 1 -0.1891 3.0365 -0.0532 34 1 3.4269 4.2356 -6.1988 35 1 2.7281 2.6528 -6.6168 36 1 2.1699 4.1208 -7.4542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443079432.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:02 Heat of formation + Delta-G solvation = -126.431158 kcal Electronic energy + Delta-G solvation = -25548.506212 eV Core-core repulsion = 21672.693461 eV Total energy + Delta-G solvation = -3875.812751 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.16106 -40.28689 -38.22928 -37.96435 -37.69346 -36.77742 -34.70279 -33.25609 -31.53941 -29.73640 -28.49938 -27.58383 -24.94474 -24.19479 -23.40529 -22.02428 -20.33917 -19.75071 -19.41020 -18.53690 -18.33315 -17.95121 -17.90316 -17.30411 -16.94239 -16.44198 -16.00488 -15.48251 -15.42856 -14.84674 -14.76502 -14.64103 -14.42661 -13.86246 -13.60694 -13.39940 -13.34054 -13.13023 -13.05041 -12.98851 -12.80607 -12.74317 -12.66657 -12.32887 -12.20633 -12.14118 -12.01191 -11.84935 -11.71240 -11.61021 -11.50354 -10.56109 -10.30144 -9.87073 -8.19006 -6.27831 -0.91464 -0.75254 -0.33524 0.18043 0.32121 1.31041 1.38503 1.39505 1.43291 1.54065 2.09301 2.43650 2.67546 3.13396 3.22493 3.41262 3.63414 3.82704 4.03680 4.15689 4.19686 4.24643 4.45898 4.49107 4.56021 4.61816 4.72362 4.90920 5.07097 5.14978 5.17837 5.42491 5.51699 5.72837 5.93182 6.13932 6.21452 6.78825 7.40277 8.88759 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.015251 B = 0.004599 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.560570 B = 6086.474572 C = 6661.806937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.983 5.983 4 C 0.265 3.735 5 C -0.548 4.548 6 H 0.048 0.952 7 C 0.018 3.982 8 N -0.919 5.919 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.267 1.267 13 S 2.718 3.282 14 O -0.982 6.982 15 O -0.971 6.971 16 C -0.703 4.703 17 C -0.181 4.181 18 S 0.656 5.344 19 N -0.519 5.519 20 C 0.110 3.890 21 C 0.524 3.476 22 O -0.509 6.509 23 O -0.333 6.333 24 C 0.021 3.979 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.021 0.979 31 H 0.051 0.949 32 H 0.268 0.732 33 H 0.226 0.774 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.103 0.505 -12.442 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.825 5.825 4 C 0.142 3.858 5 C -0.587 4.587 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.192 1.192 13 S 2.803 3.197 14 O -0.972 6.972 15 O -0.961 6.961 16 C -0.802 4.802 17 C -0.330 4.330 18 S 0.810 5.190 19 N -0.357 5.357 20 C -0.060 4.060 21 C 0.364 3.636 22 O -0.397 6.397 23 O -0.248 6.248 24 C -0.072 4.072 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.726 1.552 -13.402 19.972 hybrid contribution 2.496 -0.771 0.780 2.726 sum -12.230 0.781 -12.621 17.592 Atomic orbital electron populations 1.22267 0.94004 1.04233 1.02329 1.21521 0.95923 0.80803 1.03894 1.57423 1.81768 1.22580 1.20733 1.18839 0.96470 0.90629 0.79863 1.21840 1.02909 1.27946 1.06010 0.93354 1.25588 1.00561 0.94781 0.97208 1.69962 1.37579 1.31236 1.17147 0.85656 0.80281 0.78124 0.78574 1.19886 1.20760 1.19225 1.01226 0.73232 0.73074 0.72151 1.93531 1.54144 1.64848 1.84723 1.93458 1.85357 1.56928 1.60368 1.31392 1.24842 1.23213 1.00784 1.27743 0.97600 1.00128 1.07511 1.80017 1.16606 1.33522 0.88872 1.71913 1.09849 1.22624 1.31309 1.19066 0.93643 1.01946 0.91373 1.20416 0.84634 0.75168 0.83402 1.90971 1.25230 1.40494 1.83028 1.86600 1.47161 1.73155 1.17842 1.23857 0.90274 1.03660 0.89393 0.89023 0.91067 0.92724 0.90278 0.89373 0.96109 0.93114 0.92344 0.75746 0.91426 0.91263 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.10 3.41 6.37 86.38 0.55 3.96 16 3 N -0.98 -40.31 2.47 -519.85 -1.28 -41.59 16 4 C 0.26 12.62 4.98 85.63 0.43 13.05 16 5 C -0.55 -30.47 9.38 25.60 0.24 -30.23 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.02 1.02 5.46 84.65 0.46 1.49 16 8 N -0.92 -51.72 13.29 21.45 0.28 -51.43 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 S 2.72 121.11 4.20 -56.49 -0.24 120.88 16 14 O -0.98 -53.25 17.10 -126.44 -2.16 -55.41 16 15 O -0.97 -45.13 14.56 -119.17 -1.73 -46.87 16 16 C -0.70 -24.56 5.91 21.83 0.13 -24.43 16 17 C -0.18 -4.53 10.97 67.07 0.74 -3.80 16 18 S 0.66 11.68 23.20 -56.49 -1.31 10.37 16 19 N -0.52 -14.11 11.22 -75.24 -0.84 -14.96 16 20 C 0.11 3.76 6.66 42.09 0.28 4.04 16 21 C 0.52 19.35 7.92 70.28 0.56 19.91 16 22 O -0.51 -22.18 12.95 27.48 0.36 -21.83 16 23 O -0.33 -9.83 10.47 -56.49 -0.59 -10.42 16 24 C 0.02 0.43 10.56 113.37 1.20 1.63 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 2.61 6.91 -2.39 -0.02 2.59 16 29 H 0.09 2.92 8.10 -2.39 -0.02 2.90 16 30 H 0.02 1.06 7.76 -2.39 -0.02 1.04 16 31 H 0.05 2.30 8.11 -2.38 -0.02 2.28 16 32 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.23 4.65 7.95 -2.91 -0.02 4.62 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.15 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -80.49 342.54 0.93 -79.55 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.11 Total: 2.97 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 5.32 Total: -17.65 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -1.84 Total: -107.98 kcal Atomic # 8 Polarization: -130.39 SS G_CDS: -4.13 Total: -134.52 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 132.80 SS G_CDS: -1.55 Total: 131.25 kcal Total: -80.49 0.93 -79.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443079432.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.879 kcal (2) G-P(sol) polarization free energy of solvation -80.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds